Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929837-18337-196010391463.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig30 Length=532
Score E Sequences producing significant alignments: (Bits) Value gi|92878290|gb|ABE84969.1| Ribosomal protein L19e [Medicago trun 303 2e-82 gi|40287526|gb|AAR83877.1| 60S ribosomal protein L19 [Capsicum a 300 2e-81 gi|83284003|gb|ABC01909.1| 60S ribosomal protein L19-like protei 300 2e-81 gi|47026900|gb|AAT08672.1| ribosomal protein L19 [Hyacinthus ori 299 3e-81 gi|115452901|ref|NP_001050051.1| Os03g0337800 [Oryza sativa (... 294 1e-79 gi|32401377|gb|AAP80858.1| ribosomal protein L19 [Triticum aesti 293 3e-79 gi|115453895|ref|NP_001050548.1| Os03g0579300 [Oryza sativa (... 293 3e-79 gi|15218602|ref|NP_171777.1| EMB2386; structural constituent ... 292 4e-79 gi|18087585|gb|AAL58923.1|AF462835_1 At1g02780/T14P4_3 [Arabidop 290 2e-78 gi|15228314|ref|NP_188300.1| structural constituent of riboso... 288 6e-78 gi|7440943|pir||T01426 ribosomal protein L19.T2H3.3 - Arabido... 287 1e-77 gi|15235290|ref|NP_192132.1| structural constituent of riboso... 287 1e-77 gi|116058908|emb|CAL54615.1| 60s ribosomal protein L19 (ISS) [Os 206 5e-53 gi|121489789|emb|CAK18866.1| 60 S ribosomal protein L19 precurso 167 2e-41 gi|7440944|pir||T03648 probable ribosomal protein L19 - maize (f 112 8e-25 gi|1350677|sp|Q08066|RL19_MAIZE 60S ribosomal protein L19 112 8e-25 gi|475257|gb|AAA18552.1| putative ribosomal protein L19 [Zea may 111 1e-24 gi|51969318|dbj|BAD43351.1| probable ribosomal protein [Arabi... 71.2 2e-12 gi|22831123|dbj|BAC15984.1| hypothetical protein [Oryza sativa ( 58.9 1e-08 gi|37202062|gb|AAQ89646.1| At4g16030 [Arabidopsis thaliana] 56.2 7e-08 gi|15234776|ref|NP_193338.1| structural constituent of riboso... 56.2 7e-08 gi|8777580|dbj|BAA97098.1| unnamed protein product [Arabidopsis 35.8 0.093 gi|57013937|ref|YP_173410.1| ribosomal protein S3 [Nicotiana ... 31.2 2.3 gi|417728|sp|Q04716|RT03_PETHY Mitochondrial ribosomal protei... 31.2 2.3 gi|51091652|dbj|BAD36421.1| hypothetical protein [Oryza sativa ( 30.8 3.0 gi|15242009|ref|NP_198254.1| unknown protein [Arabidopsis thalia 30.0 5.1 gi|110288928|gb|ABB47260.2| transposon protein, putative, CAC... 29.6 6.7 gi|15217299|gb|AAK92643.1|AC079634_4 Hypothetical protein [Oryza 29.6 6.7 gi|52076182|dbj|BAD46722.1| hypothetical protein [Oryza sativa ( 29.6 6.7 gi|111558773|gb|ABH10549.1| NADH dehydrogenase F [Purshia triden 29.3 8.7 gi|83283989|gb|ABC01902.1| putative 60S ribosomal protein L7-... 29.3 8.7 gi|42562838|ref|NP_176263.2| unknown protein [Arabidopsis thalia 29.3 8.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 445 Number of extensions: 10 Number of successful extensions: 4 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 4 Number of HSP's successfully gapped: 0 Length of query: 532 Length of database: 101054579 Length adjustment: 106 Effective length of query: 426 Effective length of database: 71019585 Effective search space: 5042390535 Effective search space used: 5042390535 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)