RID=1168944698-23315-205336338328.BLASTQ1, Contig301

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944698-23315-205336338328.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

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Score E Sequences producing significant alignments: (Bits) Value gi|9294389|dbj|BAB02399.1| unnamed protein product [Arabidopsis 29.3 0.92 gi|116831208|gb|ABK28558.1| unknown [Arabidopsis thaliana] 29.3 0.92 gi|15231905|ref|NP_188085.1| unknown protein [Arabidopsis tha... 29.3 0.92

Alignments

 

>gi|9294389|dbj|BAB02399.1|  unnamed protein product [Arabidopsis thaliana]
Length=237

 Score = 29.3 bits (64),  Expect(2) = 0.92
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = -2

Query  149  ELGPQQREPKP*EHKQRREQALEKPW---------REPLLEF  51
            E  P++++PK  + K+R    L+ PW         REP +EF
Sbjct  192  EKDPKEKDPKEKDPKRRTRMVLQNPWKQTSQEGPLREPRVEF  233


 Score = 21.2 bits (43),  Expect(2) = 0.92
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
 Frame = -3

Query  280  GDATARGDKSSDPESRAEKE  221
            GD    GD+  DP+ +  KE
Sbjct  178  GDLEKDGDQEKDPKEKDPKE  197


>gi|116831208|gb|ABK28558.1|  unknown [Arabidopsis thaliana]
Length=233

 Score = 29.3 bits (64),  Expect(2) = 0.92
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = -2

Query  149  ELGPQQREPKP*EHKQRREQALEKPW---------REPLLEF  51
            E  P++++PK  + K+R    L+ PW         REP +EF
Sbjct  187  EKDPKEKDPKEKDPKRRTRMVLQNPWKQTSQEGPLREPRVEF  228


 Score = 21.2 bits (43),  Expect(2) = 0.92
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
 Frame = -3

Query  280  GDATARGDKSSDPESRAEKE  221
            GD    GD+  DP+ +  KE
Sbjct  173  GDLEKDGDQEKDPKEKDPKE  192


>gi|15231905|ref|NP_188085.1|  unknown protein [Arabidopsis thaliana]
 gi|91806427|gb|ABE65941.1|  hypothetical protein At3g14670 [Arabidopsis thaliana]
Length=232

 Score = 29.3 bits (64),  Expect(2) = 0.92
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = -2

Query  149  ELGPQQREPKP*EHKQRREQALEKPW---------REPLLEF  51
            E  P++++PK  + K+R    L+ PW         REP +EF
Sbjct  187  EKDPKEKDPKEKDPKRRTRMVLQNPWKQTSQEGPLREPRVEF  228


 Score = 21.2 bits (43),  Expect(2) = 0.92
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
 Frame = -3

Query  280  GDATARGDKSSDPESRAEKE  221
            GD    GD+  DP+ +  KE
Sbjct  173  GDLEKDGDQEKDPKEKDPKE  192

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 263 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 426 Length of database: 101054579 Length adjustment: 102 Effective length of query: 324 Effective length of database: 72152981 Effective search space: 2886119240 Effective search space used: 2886119240 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 6 Blast Hits on the Query Sequence