Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168944888-6711-31255166169.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig312 Length=543
Score E Sequences producing significant alignments: (Bits) Value gi|42568470|ref|NP_199981.2| unknown protein [Arabidopsis thalia 38.5 0.015 gi|15239746|ref|NP_199703.1| unknown protein [Arabidopsis tha... 38.5 0.015 gi|10177867|dbj|BAB11237.1| unnamed protein product [Arabidopsis 38.5 0.015 gi|15021746|gb|AAK77900.1|AF397028_1 root nodule extensin [Pisum 37.0 0.044 gi|47847844|dbj|BAD21638.1| hypothetical protein [Oryza sativa ( 37.0 0.044 gi|55733861|gb|AAV59368.1| unknown protein [Oryza sativa (japoni 35.8 0.098 gi|62421776|gb|AAX82553.1| 120 kDa pistil extensin-like protein 35.8 0.098 gi|62421773|gb|AAX82551.1| 120 kDa pistil extensin-like protein 35.8 0.098 gi|62421778|gb|AAX82554.1| 120 kDa pistil extensin-like protein 35.8 0.098 gi|62421780|gb|AAX82555.1| 120 kDa pistil extensin-like protein 35.8 0.098 gi|115477437|ref|NP_001062314.1| Os08g0528700 [Oryza sativa (... 35.4 0.13 gi|55978841|gb|AAV68882.1| hypothetical protein AT5G22560 [Arabi 35.4 0.13 gi|60547903|gb|AAX23915.1| hypothetical protein At5g22560 [Arabi 35.4 0.13 gi|77553536|gb|ABA96332.1| transposon protein, putative, CACT... 35.4 0.13 gi|115483492|ref|NP_001065416.1| Os10g0565000 [Oryza sativa (... 35.4 0.13 gi|15242915|ref|NP_197648.1| unknown protein [Arabidopsis tha... 35.4 0.13 gi|488731|emb|CAA55883.1| chitinase [Beta vulgaris subsp. vul... 35.4 0.13 gi|22415744|gb|AAM95247.1| AP2 domain transcription factor [Zea 35.0 0.17 gi|15226640|ref|NP_179188.1| structural constituent of cell w... 35.0 0.17 gi|62421767|gb|AAX82549.1| 120 kDa pistil extensin-like prote... 35.0 0.17 gi|62421769|gb|AAX82550.1| 120 kDa pistil extensin-like protein 35.0 0.17 gi|30699212|ref|NP_849895.1| ATEXT4 (extensin 4) [Arabidopsis th 35.0 0.17 gi|18411288|ref|NP_565143.1| ATEXT4 (extensin 4) [Arabidopsis th 35.0 0.17 gi|8099120|dbj|BAA90492.1| unnamed protein product [Oryza sativa 35.0 0.17 gi|110816007|gb|ABG91751.1| HyPRP1 [Gossypium hirsutum] 33.5 0.17 gi|116057899|emb|CAL54102.1| oxalate/formate antiporter (oxlT-2) 34.7 0.22 gi|115435568|ref|NP_001042542.1| Os01g0239000 [Oryza sativa (... 34.7 0.22 gi|13940500|gb|AAK50394.1|AF318582_1 putative transcription fact 34.7 0.22 gi|15021752|gb|AAK77903.1|AF397031_1 root nodule extensin [Pisum 34.7 0.22 gi|170444|gb|AAA34164.1| extensin (class II) 34.7 0.22 gi|2653671|gb|AAC15893.1| 120 kDa style glycoprotein [Nicotiana 34.7 0.22 gi|115480797|ref|NP_001063992.1| Os09g0571200 [Oryza sativa (... 34.7 0.22 gi|51090569|dbj|BAD36021.1| hypothetical protein [Oryza sativ... 34.7 0.22 gi|115477851|ref|NP_001062521.1| Os08g0562600 [Oryza sativa (... 34.7 0.22 gi|2129582|pir||S71227 extensin 1 - Arabidopsis thaliana >gi|... 34.7 0.22 gi|21263615|sp|Q38913|EXTN1_ARATH Extensin-1 precursor (AtExt... 34.7 0.22 gi|12248386|dbj|BAB20085.1| extensin 4 [Arabidopsis thaliana] 34.7 0.22 gi|15240762|ref|NP_201548.1| actin binding [Arabidopsis thali... 34.7 0.22 gi|115487600|ref|NP_001066287.1| Os12g0174300 [Oryza sativa (... 34.3 0.29 gi|15021756|gb|AAK77905.1|AF397033_1 root nodule extensin [Pisum 34.3 0.29 gi|425682|gb|AAB28462.1| extensin=nodule-specific proline-ric... 34.3 0.29 gi|19881600|gb|AAM01001.1|AC090488_1 Hypothetical protein [Oryza 34.3 0.29 gi|22655773|gb|AAN04190.1| Putative hydroxyproline-rich glyco... 34.3 0.29 gi|21636166|gb|AAM69846.1| unknown [Aegilops tauschii] 33.9 0.37 gi|9294315|dbj|BAB02212.1| unnamed protein product [Arabidopsis 33.9 0.37 gi|544262|sp|Q03211|PEXLP_TOBAC Pistil-specific extensin-like... 33.5 0.49 gi|21046|emb|CAA42942.1| proline-rich protein [Phaseolus vulgari 31.6 0.62 gi|116309473|emb|CAH66543.1| OSIGBa0147J02.2 [Oryza sativa (indi 33.1 0.64 gi|18765764|dbj|BAB85218.1| matrix metalloproteinase [Volvox car 33.1 0.64 gi|15235386|ref|NP_192985.1| PEARLI 1 1; lipid binding [Arabi... 33.1 0.64 gi|21741327|emb|CAD40600.1| OSJNBb0066J23.4 [Oryza sativa (japon 33.1 0.64 gi|115468054|ref|NP_001057626.1| Os06g0473000 [Oryza sativa (... 32.7 0.83 gi|45645342|gb|AAS73289.1| gamma kafirin protein [Sorghum bicolo 32.7 0.83 gi|45645344|gb|AAS73290.1| gamma kafirin protein [Sorghum bicolo 32.7 0.83 gi|21992|emb|CAA46283.1| extensin [Volvox carteri] 32.7 0.83 gi|115481142|ref|NP_001064164.1| Os10g0148100 [Oryza sativa (... 32.7 0.83 gi|51090415|dbj|BAD35337.1| putative poor homologous synapsis... 32.7 0.83 gi|46806424|dbj|BAD17581.1| hypothetical protein [Oryza sativa ( 32.7 0.83 gi|671656|emb|CAA44347.1| gamma-kafirin preprotein [Sorghum bico 32.7 0.83 gi|170156|gb|AAA73078.1| [Sorghum bicolor endosperm tissue mR... 32.7 0.83 gi|115441645|ref|NP_001045102.1| Os01g0899700 [Oryza sativa (... 32.3 1.1 gi|15021750|gb|AAK77902.1|AF397030_1 root nodule extensin [Pisum 32.3 1.1 gi|15222149|ref|NP_175372.1| structural constituent of cell w... 32.3 1.1 gi|5917664|gb|AAD55979.1|AF159296_1 extensin-like protein [Lycop 32.3 1.1 gi|15021742|gb|AAK77898.1|AF397026_1 root nodule extensin [Pisum 32.3 1.1 gi|15021748|gb|AAK77901.1|AF397029_1 root nodule extensin [Pisum 32.3 1.1 gi|15021744|gb|AAK77899.1|AF397027_1 root nodule extensin [Pisum 32.3 1.1 gi|15022163|gb|AAC49600.2| putative proline-rich protein [Solanu 32.3 1.1 gi|535586|gb|AAB41815.1| proline rich protein [Medicago sativa] 32.3 1.1 gi|115474417|ref|NP_001060805.1| Os08g0108300 [Oryza sativa (... 32.3 1.1 gi|37051099|dbj|BAC81646.1| hydroxyproline-rich glycoprotein-1 [ 32.3 1.1 gi|30685162|ref|NP_188532.2| protein binding / structural con... 32.3 1.1 gi|116058151|emb|CAL53340.1| Fibrillins and related proteins ... 32.0 1.4 gi|13265426|gb|AAG40020.2|AF324669_1 At2g14890 [Arabidopsis thal 32.0 1.4 gi|15236481|ref|NP_192578.1| structural constituent of cell w... 32.0 1.4 gi|347455|gb|AAA33971.1| hydroxyproline-rich glycoprotein 32.0 1.4 gi|50086705|gb|AAT70233.1| cax51 [Capsella bursa-pastoris] 32.0 1.4 gi|42570779|ref|NP_973463.1| AGP9 (ARABINOGALACTAN PROTEIN 9) [A 32.0 1.4 gi|15226024|ref|NP_179095.1| AGP9 (ARABINOGALACTAN PROTEIN 9)... 32.0 1.4 gi|42565109|ref|NP_188851.2| CWLP (CELL WALL-PLASMA MEMBRANE ... 32.0 1.4 gi|115436496|ref|NP_001043006.1| Os01g0356900 [Oryza sativa (... 32.0 1.4 gi|134920|sp|P21997|SSGP_VOLCA Sulfated surface glycoprotein ... 32.0 1.4 gi|15220327|ref|NP_174848.1| lipid binding [Arabidopsis thali... 32.0 1.4 gi|116309548|emb|CAH66611.1| H0211A12.14 [Oryza sativa (indica c 31.6 1.9 gi|115473145|ref|NP_001060171.1| Os07g0596300 [Oryza sativa (... 31.6 1.9 gi|115469320|ref|NP_001058259.1| Os06g0658800 [Oryza sativa (... 31.6 1.9 gi|115437660|ref|NP_001043350.1| Os01g0561500 [Oryza sativa (... 31.6 1.9 gi|115437936|ref|NP_001043417.1| Os01g0584100 [Oryza sativa (... 31.6 1.9 gi|38346279|emb|CAE03982.2| OSJNBa0033H08.10 [Oryza sativa (japo 31.6 1.9 gi|7573303|emb|CAB87621.1| putative protein [Arabidopsis thalian 31.6 1.9 gi|15235668|ref|NP_193070.1| unknown protein [Arabidopsis tha... 31.6 1.9 gi|15224236|ref|NP_181844.1| structural constituent of cell w... 31.6 1.9 gi|7211797|gb|AAF40442.1|AF239615_1 CRANTZ hydroxyproline-rich g 31.6 1.9 gi|22530952|gb|AAM96980.1| putative protein [Arabidopsis thal... 31.6 1.9 gi|42567849|ref|NP_196958.2| unknown protein [Arabidopsis thalia 31.6 1.9 gi|115466262|ref|NP_001056730.1| Os06g0136900 [Oryza sativa (... 31.6 1.9 gi|38637073|dbj|BAD03330.1| hypothetical protein [Oryza sativ... 31.6 1.9 gi|115470197|ref|NP_001058697.1| Os07g0105300 [Oryza sativa (... 31.6 1.9 gi|21644674|dbj|BAC01231.1| hypothetical protein [Oryza sativa ( 31.6 1.9 gi|1486263|dbj|BAA13175.1| extensin [Catharanthus roseus] 31.6 1.9
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 348 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 543 Length of database: 101054579 Length adjustment: 106 Effective length of query: 437 Effective length of database: 71019585 Effective search space: 5326468875 Effective search space used: 5326468875 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)