Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168945588-11045-160219709766.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig338 Length=546
Score E Sequences producing significant alignments: (Bits) Value gi|115444405|ref|NP_001045982.1| Os02g0162500 [Oryza sativa (... 232 7e-61 gi|28436071|gb|AAO41731.1| cytoplasmic ribosomal protein S14 [Br 229 6e-60 gi|82623419|gb|ABB87124.1| hypothetical protein [Solanum tube... 228 8e-60 gi|131772|sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone 228 8e-60 gi|115446513|ref|NP_001047036.1| Os02g0534800 [Oryza sativa (... 228 8e-60 gi|131773|sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone 228 1e-59 gi|15231260|ref|NP_190826.1| structural constituent of riboso... 227 2e-59 gi|77745450|gb|ABB02624.1| ribosomal protein S14-like [Solanum t 226 3e-59 gi|15229775|ref|NP_187758.1| structural constituent of riboso... 224 2e-58 gi|3122785|sp|O22584|RS14_LUPLU 40S ribosomal protein S14 >gi... 223 3e-58 gi|15227588|ref|NP_181158.1| structural constituent of riboso... 222 8e-58 gi|92889969|gb|ABE90096.1| Ribosomal protein S11 [Medicago trunc 221 1e-57 gi|1173201|sp|P46295|RS14_CHLRE 40S ribosomal protein S14 >gi... 210 3e-54 gi|17369862|sp|Q9XEK6|RS14_TORRU 40S ribosomal protein S14 >g... 175 1e-43 gi|116061722|emb|CAL52440.1| 40S ribosomal protein S14 (ISS) [Os 170 3e-42 gi|82623421|gb|ABB87125.1| hypothetical protein [Solanum tuberos 140 4e-33 gi|2500443|sp|P93377|RS14_TOBAC 40S ribosomal protein S14 >gi... 77.8 2e-14 gi|116008989|gb|ABJ52163.1| ribosomal protein S11 [Phyllostachys 62.0 1e-09 gi|11466822|ref|NP_039418.1| ribosomal protein S11 [Oryza sat... 62.0 1e-09 gi|62287413|sp|Q672I7|RR11_PENAM Chloroplast 30S ribosomal pr... 60.8 3e-09 gi|48478802|ref|YP_024409.1| ribosomal protein S11 [Saccharum... 60.8 3e-09 gi|14017604|ref|NP_114290.1| ribosomal protein S11 [Triticum ... 60.8 3e-09 gi|11467224|ref|NP_043056.1| ribosomal protein S11 [Zea mays]... 60.5 4e-09 gi|13518367|ref|NP_084726.1| ribosomal protein S11 [Oenothera... 58.5 1e-08 gi|30352065|ref|NP_848092.1| ribosomal protein S11 [Adiantum ... 57.4 3e-08 gi|48474870|sp|Q8MCA0|RR11_PHAAN Chloroplast 30S ribosomal pr... 57.4 3e-08 gi|108802674|ref|YP_636332.1| ribosomal protein S11 [Eucalypt... 57.4 3e-08 gi|32363478|sp|Q9BBN1|RR11_MARQU Chloroplast 30S ribosomal prote 57.0 4e-08 gi|12659011|gb|AAK01151.1|AF311314_1 PRS11 [Marsilea quadrifolia 57.0 4e-08 gi|69216838|gb|AAZ03977.1| ribosomal protein S11 [Typha latifoli 57.0 4e-08 gi|69216840|gb|AAZ03978.1| ribosomal protein S11 [Yucca schidige 57.0 4e-08 gi|91214174|ref|YP_538798.1| ribosomal protein S11 [Glycine m... 56.6 5e-08 gi|133727|sp|P06587|RR11_PEA Chloroplast 30S ribosomal protei... 56.6 5e-08 gi|28202205|ref|NP_777446.1| ribosomal protein S11 [Anthocero... 56.6 5e-08 gi|114330002|ref|YP_740683.1| ribosomal protein S11 [Nandina ... 55.8 9e-08 gi|108796739|ref|YP_636497.1| ribosomal protein S11 [Zygnema ... 55.8 9e-08 gi|78103282|ref|YP_358614.1| ribosomal protein S11 [Phalaenop... 55.8 9e-08 gi|7525066|ref|NP_051091.1| ribosomal protein S11 [Arabidopsi... 55.8 9e-08 gi|114107165|ref|YP_740150.1| ribosomal protein S11 [Daucus c... 55.5 1e-07 gi|121720646|ref|YP_001001567.1| ribosomal protein S11 [Nupha... 55.5 1e-07 gi|52220842|ref|YP_086998.1| ribosomal protein S11 [Panax gin... 55.5 1e-07 gi|68164837|ref|YP_247633.1| ribosomal protein S11 [Cucumis s... 55.5 1e-07 gi|115605054|ref|YP_784506.1| ribosomal protein S11 [Piper ce... 55.1 2e-07 gi|91208934|ref|YP_538969.1| ribosomal protein S11 [Gossypium... 55.1 2e-07 gi|69216832|gb|AAZ03974.1| ribosomal protein S11 [Ginkgo biloba] 55.1 2e-07 gi|69216836|gb|AAZ03976.1| ribosomal protein S11 [Ranunculus ... 54.7 2e-07 gi|32480875|ref|NP_862786.1| ribosomal protein S11 [Calycanth... 54.7 2e-07 gi|13518471|ref|NP_084830.1| ribosomal protein S11 [Lotus cor... 54.7 2e-07 gi|7524920|ref|NP_045922.1| ribosomal protein S11 [Chlorella ... 54.7 2e-07 gi|114329780|ref|YP_740598.1| ribosomal protein S11 [Platanus... 54.3 3e-07 gi|108773380|ref|YP_635842.1| ribosomal protein S11 [Oltmanns... 54.3 3e-07 gi|89280668|ref|YP_514885.1| ribosomal protein S11 [Lycopersi... 54.3 3e-07 gi|75755692|ref|YP_319796.1| ribosomal protein S11 [Acorus ca... 54.3 3e-07 gi|34501437|ref|NP_904224.1| ribosomal protein S11 [Physcomit... 54.3 3e-07 gi|11465991|ref|NP_054533.1| ribosomal protein S11 [Nicotiana... 54.3 3e-07 gi|11466736|ref|NP_039332.1| ribosomal protein S11 [Marchanti... 54.3 3e-07 gi|114804297|ref|YP_762294.1| ribosomal protein S11 [Morus in... 53.9 4e-07 gi|110227112|ref|YP_665591.1| ribosomal protein S11 [Populus ... 53.9 4e-07 gi|115604966|ref|YP_784419.1| ribosomal protein S11 [Drimys g... 53.5 5e-07 gi|114329688|ref|YP_740509.1| ribosomal protein S11 [Citrus s... 53.5 5e-07 gi|91984024|ref|YP_567110.1| ribosomal protein S11 [Vitis vin... 53.5 5e-07 gi|108796891|ref|YP_636189.1| ribosomal protein S11 [Pseudend... 53.5 5e-07 gi|50346816|ref|YP_053187.1| ribosomal protein S11 [Nymphaea ... 53.5 5e-07 gi|11497559|ref|NP_054967.1| ribosomal protein S11 [Spinacia ... 53.5 5e-07 gi|27808056|dbj|BAC55479.1| ribosomal protein S11 [Anthoceros fo 53.5 5e-07 gi|108744227|gb|ABD62243.1| ribosomal protein S11 [Chlorokybus a 53.1 6e-07 gi|94502523|ref|YP_588150.1| ribosomal protein S11 [Helianthu... 53.1 6e-07 gi|29565641|ref|NP_817220.1| ribosomal protein S11 [Pinus kor... 53.1 6e-07 gi|34500946|ref|NP_904131.1| ribosomal protein S11 [Amborella... 53.1 6e-07 gi|87240443|gb|ABD32301.1| Ribosomal protein S11 [Medicago trunc 52.8 8e-07 gi|108796841|ref|YP_636428.1| ribosomal protein S11 [Staurast... 52.8 8e-07 gi|81301601|ref|YP_398897.1| ribosomal protein S11 [Nicotiana... 52.8 8e-07 gi|115391933|ref|YP_778522.1| ribosomal protein S11 [Jasminum... 52.4 1e-06 gi|91208879|ref|YP_539040.1| ribosomal protein S11 [Physcomit... 52.4 1e-06 gi|7524685|ref|NP_042439.1| ribosomal protein S11 [Pinus thun... 52.4 1e-06 gi|114107079|ref|YP_740235.1| ribosomal protein S11 [Lirioden... 51.6 2e-06 gi|113170452|ref|YP_717244.1| Rps11 [Ostreococcus tauri] >gi|... 51.6 2e-06 gi|12264|emb|CAA27213.1| unnamed protein product [Spinacia olera 51.6 2e-06 gi|11466358|ref|NP_038361.1| ribosomal protein S11 [Mesostigm... 51.6 2e-06 gi|116617140|ref|YP_817515.1| ribosomal protein S11 [Coffea a... 51.2 2e-06 gi|38638294|ref|NP_943668.1| ribosomal protein S11 [Chara vul... 51.2 2e-06 gi|22711965|ref|NP_683833.1| ribosomal protein S11 [Chaetosph... 51.2 2e-06 gi|81176284|ref|YP_398361.1| chloroplast 30S ribosomal protei... 51.2 2e-06 gi|110225646|ref|YP_665652.1| ribosomal protein S11 [Nephrose... 50.8 3e-06 gi|11467767|ref|NP_050818.1| ribosomal protein S11 [Nephrosel... 50.1 5e-06 gi|22550354|ref|NP_689355.1| ribosomal protein S11 [Chaetosph... 49.7 7e-06 gi|48474762|sp|O98461|RR11_SPIMX Chloroplast 30S ribosomal pr... 49.3 9e-06 gi|115531951|ref|YP_784106.1| ribosomal protein S11 [Pelargon... 48.5 1e-05 gi|108773280|ref|YP_635781.1| ribosomal protein S11 [Chara vu... 48.5 1e-05 gi|11497467|ref|NP_042257.1| ribosomal protein S11 [Protothec... 48.1 2e-05 gi|11467126|ref|NP_054427.1| ribosomal protein S11 [Marchanti... 47.0 4e-05 gi|60117162|ref|YP_209496.1| ribosomal protein S11 [Huperzia ... 46.6 6e-05 gi|94317204|gb|ABF14780.1| Rps11 [Pelargonium x hortorum] 45.8 1e-04 gi|18860344|ref|NP_569661.1| ribosomal protein S11 [Psilotum ... 44.3 3e-04 gi|11466964|ref|NP_054385.1| ribosomal protein S11 [Epifagus ... 43.9 4e-04 gi|113170477|ref|YP_717268.1| Rps11 [Ostreococcus tauri] >gi|... 42.7 8e-04 gi|32348718|gb|AAP76333.1| small subunit ribosomal protein [Clem 40.8 0.003 gi|115453305|ref|NP_001050253.1| Os03g0385900 [Oryza sativa (... 38.5 0.015 gi|50881465|gb|AAT85310.1| small subunit ribosomal protein, p... 38.5 0.015 gi|1841357|dbj|BAA12798.1| mitochondrial ribosomal protein S1... 38.5 0.015
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 362 Number of extensions: 10 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 546 Length of database: 101054579 Length adjustment: 106 Effective length of query: 440 Effective length of database: 71019585 Effective search space: 5397488460 Effective search space used: 5397488460 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)