Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168945734-5239-165722206174.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig344 Length=570
Score E Sequences producing significant alignments: (Bits) Value gi|30693911|ref|NP_850698.1| unknown protein [Arabidopsis thalia 130 2e-30 gi|7629998|emb|CAB88340.1| putative protein [Arabidopsis thalian 125 1e-28 gi|77999982|dbj|BAE46872.1| Rhomboid family protein AtRBL1 [Arab 117 2e-26 gi|42569431|ref|NP_180469.3| unknown protein [Arabidopsis tha... 117 2e-26 gi|115486807|ref|NP_001068547.1| Os11g0704800 [Oryza sativa (... 109 8e-24 gi|115450317|ref|NP_001048759.1| Os03g0116400 [Oryza sativa (... 105 9e-23 gi|3461845|gb|AAC33231.1| hypothetical protein [Arabidopsis thal 105 1e-22 gi|115480259|ref|NP_001063723.1| Os09g0525900 [Oryza sativa (... 100 4e-21 gi|15221690|ref|NP_176500.1| unknown protein [Arabidopsis tha... 99.4 8e-21 gi|294845|gb|AAA02747.1| membrane protein [Saccharum hybrid cult 97.1 4e-20 gi|115434508|ref|NP_001042012.1| Os01g0147300 [Oryza sativa (... 92.8 7e-19 gi|15236387|ref|NP_194038.1| unknown protein [Arabidopsis tha... 92.4 1e-18 gi|15240744|ref|NP_196342.1| unknown protein [Arabidopsis tha... 91.3 2e-18 gi|115477653|ref|NP_001062422.1| Os08g0546700 [Oryza sativa (... 89.7 6e-18 gi|15222058|ref|NP_172735.1| unknown protein [Arabidopsis tha... 88.2 2e-17 gi|9502383|gb|AAF88090.1|AC025417_18 T12C24.28 [Arabidopsis thal 88.2 2e-17 gi|92881546|gb|ABE86309.1| Rhomboid-like protein [Medicago trunc 85.9 9e-17 gi|15219034|ref|NP_175667.1| unknown protein [Arabidopsis tha... 85.5 1e-16 gi|92895902|gb|ABE92910.1| Protein secE/sec61-gamma protein [Med 81.3 2e-15 gi|87162923|gb|ABD28718.1| Rhomboid-like protein [Medicago trunc 81.3 2e-15 gi|116310009|emb|CAH67035.1| OSIGBa0139P06.8 [Oryza sativa (indi 77.8 2e-14 gi|115459992|ref|NP_001053596.1| Os04g0569300 [Oryza sativa (... 77.8 2e-14 gi|15218144|ref|NP_177909.1| KOM (KOMPEITO) [Arabidopsis thalian 68.9 1e-11 gi|22122915|gb|AAM92298.1| putative membrane protein [Oryza s... 61.2 2e-09 gi|115483002|ref|NP_001065094.1| Os10g0521900 [Oryza sativa (... 59.3 9e-09 gi|6573780|gb|AAF17700.1|AC009243_27 F28K19.7 [Arabidopsis thali 36.2 0.083 gi|20330771|gb|AAM19134.1|AC103891_14 Hypothetical protein [O... 33.9 0.41 gi|21537324|gb|AAM61665.1| leucoanthocyanidin dioxygenase-lik... 32.7 0.92 gi|15239179|ref|NP_196179.1| iron ion binding / isopenicillin... 32.3 1.2 gi|116057495|emb|CAL51922.1| 40S ribosomal protein S17 (ISS) [Os 31.2 2.7 gi|6103625|gb|AAF03693.1| unknown [Picea rubens] 31.2 2.7 gi|115481984|ref|NP_001064585.1| Os10g0411800 [Oryza sativa (... 30.4 4.6 gi|51103313|gb|AAT96389.1| centromeric histone [Olimarabidopsis 30.0 5.9 gi|38346261|emb|CAE02083.2| OSJNBa0074B10.11 [Oryza sativa (japo 30.0 5.9 gi|15241986|ref|NP_198249.1| cysteine-type peptidase/ peptidase 30.0 5.9 gi|600118|emb|CAA84230.1| extensin-like protein [Zea mays] >g... 30.0 5.9 gi|91178253|gb|ABE27633.1| histone H3 [Arabidopsis lyrata sub... 29.6 7.8 gi|40287504|gb|AAR83866.1| 40S ribosomal protein S17 [Capsicum a 29.6 7.8 gi|76573345|gb|ABA46777.1| 40S ribosomal protein S17-like protei 29.6 7.8 gi|21593447|gb|AAM65414.1| 40S ribosomal protein S17-like [Arabi 29.6 7.8 gi|25295117|pir||B84466 40S ribosomal protein S17 [imported] - A 29.6 7.8 gi|15238332|ref|NP_196100.1| structural constituent of riboso... 29.6 7.8 gi|18395997|ref|NP_565320.1| structural constituent of riboso... 29.6 7.8 gi|15228141|ref|NP_178520.1| structural constituent of riboso... 29.6 7.8 gi|15228335|ref|NP_187672.1| structural constituent of riboso... 29.6 7.8 gi|20141760|sp|P49215|RS17_LYCES 40S ribosomal protein S17 >g... 29.6 7.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 346 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 570 Length of database: 101054579 Length adjustment: 107 Effective length of query: 463 Effective length of database: 70736236 Effective search space: 5871107588 Effective search space used: 5871107588 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)