RID=1168945867-15200-23193701861.BLASTQ1, Contig348

Alignments
 

>gi|92876646|gb|ABE84016.1|  Ribulose bisphosphate carboxylase, small chain [Medicago truncatula]
 gi|92882108|gb|ABE86603.1|  Ribulose bisphosphate carboxylase, small chain [Medicago truncatula]
Length=173

 Score =  196 bits (498),  Expect(2) = 8e-53
 Identities = 91/123 (73%), Positives = 100/123 (81%), Gaps = 1/123 (0%)
 Frame = +1

Query  142  MSAGIFAAPVAGSSYVGLKTNVPKLLP-AKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKF  318
            MSAG FAAPVAG  +VGLK+N   L P A  SI W +KTVSNGS+ HCMKTWNP NNKKF
Sbjct  1    MSAGTFAAPVAGPGFVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKF  60

Query  319  ETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLP  498
            ETLSYLPPLSD SIAKEI+YM+KK W PCLEFDE G + R NS++PGYYDGRYWTLWKLP
Sbjct  61   ETLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFDEFGCIHRANSQMPGYYDGRYWTLWKLP  120

Query  499  WLG  507
              G
Sbjct  121  MFG  123


 Score = 30.8 bits (68),  Expect(2) = 8e-53
 Identities = 13/16 (81%), Positives = 15/16 (93%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GCN+SSQVLNEI+E
Sbjct  121  MFGCNDSSQVLNEINE  136


>gi|115444275|ref|NP_001045917.1|  Os02g0152400 [Oryza sativa (japonica cultivar-group)]
 gi|51535337|dbj|BAD38596.1|  putative ribulose 1,5-bisphosphate carboxylase small subunit 
[Oryza sativa (japonica cultivar-group)]
 gi|51535980|dbj|BAD38061.1|  putative ribulose 1,5-bisphosphate carboxylase small subunit 
[Oryza sativa (japonica cultivar-group)]
 gi|113535448|dbj|BAF07831.1|  Os02g0152400 [Oryza sativa (japonica cultivar-group)]
Length=183

 Score =  144 bits (362),  Expect = 3e-34
 Identities = 59/89 (66%), Positives = 73/89 (82%), Gaps = 0/89 (0%)
 Frame = +1

Query  247  RKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFDEVG  426
            R   SNG RT+CM+TWNPF N+++E +SYLPPLS  SI+KEIE++M KGW+PCLEFD+ G
Sbjct  39   RGAASNGFRTYCMQTWNPFTNRRYEAMSYLPPLSAKSISKEIEFIMSKGWVPCLEFDKEG  98

Query  427  LVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
             + R NSR+PGYYDGRYWTLWKLP  G +
Sbjct  99   EIHRSNSRMPGYYDGRYWTLWKLPMFGCS  127


>gi|3914600|sp|O64416|RBS_MARPA  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|3168587|dbj|BAA28610.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit 
[Marchantia paleacea var. diptera]
Length=180

 Score =  141 bits (355),  Expect = 2e-33
 Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 0/91 (0%)
 Frame = +1

Query  241  WSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFDE  420
            W  KT +NGSR  CM+ W P+NN KFETLSYLPPLS  ++AK+I+Y++K GW PC+EFD 
Sbjct  45   WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDV  104

Query  421  VGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
             G V RE S +PGYYDGRYWT+WKLP  G T
Sbjct  105  QGTVTREGSTMPGYYDGRYWTMWKLPMFGCT  135


>gi|132150|sp|P10053|RBS_PINTH  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|20958|emb|CAA31774.1|  ribulose bisphosphate carboxylase preprotein [Pinus thunbergii]
Length=171

 Score =  136 bits (343),  Expect(2) = 2e-33
 Identities = 63/125 (50%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
 Frame = +1

Query  148  AGIFAAPVAGSSYVGLKTNV--PKLLPAKDSIA-WSRKTVSNGSRTHCMKTWNPFNNKKF  318
            AG  AA V  S++ GLK+    P      ++ A W +KT SNG R  CM+ W PF N KF
Sbjct  5    AGAGAATVV-SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKF  63

Query  319  ETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLP  498
            ETLSYLP L++  + KE+EY+++  W+PCLEFD  G + R+ +R PGYYDGRYW +WKLP
Sbjct  64   ETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLP  123

Query  499  WLGAT  513
              G T
Sbjct  124  MFGCT  128


 Score = 25.4 bits (54),  Expect(2) = 2e-33
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC  +SQV+NE+ E
Sbjct  124  MFGCTEASQVINEVRE  139


>gi|132146|sp|P16031|RBS_LARLA  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|295822|emb|CAA34161.1|  ribulose-1,5-carboxylase/oxygenase [Larix laricina]
Length=189

 Score =  132 bits (331),  Expect(2) = 2e-32
 Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 7/117 (5%)
 Frame = +1

Query  178  SSYVGLKTNVPKLLPAKDSIA-----WSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPP  342
            S++ GLK+      P+  +++     W +KT SNGSR  CM+ W P+ NKKFETLSYLP 
Sbjct  30   SAFTGLKSMAQ--FPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPR  87

Query  343  LSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            L+   + KE+EY++K  W+PCLEF+E G ++R     PGYYDGRYW +WKLP  G T
Sbjct  88   LTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCT  144


 Score = 26.6 bits (57),  Expect(2) = 2e-32
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC  +SQVLNE++E
Sbjct  140  MFGCTEASQVLNEVNE  155


>gi|56900734|gb|AAW31667.1|  ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 
[Ammopiptanthus mongolicus]
Length=174

 Score =  134 bits (337),  Expect(2) = 4e-32
 Identities = 65/133 (48%), Positives = 86/133 (64%), Gaps = 8/133 (6%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+PA   + A +      G+ + GLK+     +P K +   +    +NG R  CM  W 
Sbjct  2    ISSPAVTTVKASM------GAPFTGLKSMASFPVPRKVNSDITT-IANNGGRVQCMLVWP  54

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P   KKFETLSYLPPLS  S+ KE+EY+++KGW+PCLEF+ E G V REN+R PGYYDGR
Sbjct  55   PLGRKKFETLSYLPPLSIESLTKEVEYLLRKGWVPCLEFELEHGFVYRENNRSPGYYDGR  114

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G +
Sbjct  115  YWTMWKLPMFGCS  127


 Score = 23.5 bits (49),  Expect(2) = 4e-32
 Identities = 8/16 (50%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC+++SQV+ E+ E
Sbjct  123  MFGCSDASQVMKELEE  138


>gi|464595|sp|Q02980|RBS_MALSP  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|19581|emb|CAA46475.1|  ribulose bisphosphate carboxylase [Malus sp.]
Length=183

 Score =  132 bits (332),  Expect(2) = 5e-32
 Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 16/149 (10%)
 Frame = +1

Query  70   IICSNTLTPVTAVQLFLSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSR  249
            +I S T+  V+A +     PA  +M A           + GLK++    +  K +   S 
Sbjct  5    MISSGTVATVSADR---PAPAQARMVA----------PFTGLKSSSASPVTRKSNDITS-  50

Query  250  KTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVG  426
               SNG R  CM+ W P   KKFETLSYLPPLS  S+AKE++Y+++K W+PCLEF+ E G
Sbjct  51   -IASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHG  109

Query  427  LVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
             V REN R PGYYDGRYWT+WKLP  G T
Sbjct  110  FVYRENHRSPGYYDGRYWTMWKLPMFGCT  138


 Score = 25.0 bits (53),  Expect(2) = 5e-32
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +SSQVL E+ E
Sbjct  134  MFGCTDSSQVLKELEE  149


>gi|132153|sp|P24007|RBS_PYRPY  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|218021|dbj|BAA00450.1|  RuBisCO small subunit [Pyrus pyrifolia var. culta]
Length=183

 Score =  132 bits (332),  Expect(2) = 5e-32
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R  CM+ W P   KKFETLSYLPPLS  S+AKE++Y+++K W+PCLEF+ E G V 
Sbjct  53   SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVY  112

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            REN R PGYYDGRYWT+WKLP  G T
Sbjct  113  RENHRSPGYYDGRYWTMWKLPMFGCT  138


 Score = 25.0 bits (53),  Expect(2) = 5e-32
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +SSQVL E+ E
Sbjct  134  MFGCTDSSQVLKELEE  149


>gi|403160|gb|AAA33866.1|  ribulose 1,5-bisphosphate carboxylase small subunit
Length=179

 Score =  132 bits (331),  Expect(2) = 7e-32
 Identities = 66/133 (49%), Positives = 84/133 (63%), Gaps = 13/133 (9%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S PA  +M A           + GLK++    +  K +   S    SNG R  CM+ W 
Sbjct  14   VSAPAQARMVA----------PFTGLKSSSAFPVTRKSNDITS--IASNGGRVQCMQVWP  61

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P   KKFETLSYLPPLS  S+AKE++Y+++K W+PCLEF+ E G V REN+R PGYYDGR
Sbjct  62   PLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDGR  121

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  122  YWTMWKLPMFGCT  134


 Score = 25.0 bits (53),  Expect(2) = 7e-32
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +SSQVL E+ E
Sbjct  130  MFGCTDSSQVLKELEE  145


>gi|19464|emb|CAA38346.1|  ribulose bisphosphate carboxylase [Larix laricina]
Length=171

 Score =  130 bits (327),  Expect(2) = 7e-32
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 7/117 (5%)
 Frame = +1

Query  178  SSYVGLKTNVPKLLPAKDSIA-----WSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPP  342
            S++ GLK+      P+  +++     W RKT SNG+R  CM+ W P+ NKK+ETLSYLP 
Sbjct  12   SAFTGLKSMAQ--FPSSKTMSNAGAEWERKTTSNGARVRCMQVWPPYANKKWETLSYLPR  69

Query  343  LSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            L+   + KE+EY++K  W+PCLEF+E G ++R     PGYYDGRYW +WKLP  G T
Sbjct  70   LTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCT  126


 Score = 26.6 bits (57),  Expect(2) = 7e-32
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC  +SQVLNE++E
Sbjct  122  MFGCTEASQVLNEVNE  137


>gi|3914586|sp|O65349|RBS_CAPAN  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|3152715|gb|AAC17126.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit 
[Capsicum annuum]
Length=187

 Score =  130 bits (326),  Expect(2) = 2e-31
 Identities = 61/113 (53%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
 Frame = +1

Query  178  SSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHS  357
            +S+ GLK+     +  K  +  +    SNG R  CM  W P N KK+ETLSYLP LSD  
Sbjct  24   ASFNGLKSAASFPVTRKQDLDIT-SIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQ  82

Query  358  IAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            + KEIEY+++KGW+PCLEF+ E G V RE+ R PGYYDGRYWT+WKLP  G T
Sbjct  83   LLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCT  135


 Score = 25.4 bits (54),  Expect(2) = 2e-31
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVLNE+ E
Sbjct  131  MFGCTDATQVLNEVQE  146


>gi|132125|sp|P26577|RBSC_SOLTU  Ribulose bisphosphate carboxylase small chain 2C, chloroplast 
precursor (RuBisCO small subunit 2C)
 gi|21569|emb|CAA49416.1|  ribulose bisphosphate carboxylase [Solanum tuberosum]
Length=180

 Score =  133 bits (334),  Expect(2) = 2e-31
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 4/133 (3%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ A      G  A+ VA   + GLK+     +  K ++  +    SNG R  CM+ W 
Sbjct  6    MSSAAVATRGNGAQASMVA--PFTGLKSTASFPVSRKQNLDIT-SIASNGGRVRCMQVWP  62

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP LSD  + KE+EY++K GW+PCLEF+ E G V REN++ PGYYDGR
Sbjct  63   PINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGR  122

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  123  YWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 2e-31
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVEE  146


>gi|40287530|gb|AAR83879.1|  Cristal-Glass1 protein [Capsicum annuum]
Length=180

 Score =  130 bits (326),  Expect(2) = 2e-31
 Identities = 61/113 (53%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
 Frame = +1

Query  178  SSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHS  357
            +S+ GLK+     +  K  +  +    SNG R  CM  W P N KK+ETLSYLP LSD  
Sbjct  24   ASFNGLKSAASFPVTRKQDLDIT-SIASNGGRVQCMLVWPPINKKKYETLSYLPDLSDEQ  82

Query  358  IAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            + KEIEY+++KGW+PCLEF+ E G V RE+ R PGYYDGRYWT+WKLP  G T
Sbjct  83   LLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCT  135


 Score = 25.4 bits (54),  Expect(2) = 2e-31
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVLNE+ E
Sbjct  131  MFGCTDATQVLNEVQE  146


>gi|3914601|sp|O65194|RBS_MEDSA  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|3044116|gb|AAC13293.1|  ribulose-1,5-bisphosphate carboxylase small subunit [Medicago 
sativa]
Length=180

 Score =  134 bits (337),  Expect = 2e-31
 Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R +CM+ W P   KKFETLSYLPPL++  +AKE+EY+++KGWIPCLEF+ E G V 
Sbjct  50   SNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVY  109

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            REN R PGYYDGRYWT+W+LP  GAT
Sbjct  110  RENHRSPGYYDGRYWTMWRLPLFGAT  135


>gi|132120|sp|P26575|RBSA_SOLTU  Ribulose bisphosphate carboxylase small chain 2A, chloroplast 
precursor (RuBisCO small subunit 2A)
 gi|21565|emb|CAA49414.1|  ribulose bisphosphate carboxylase [Solanum tuberosum]
Length=180

 Score =  132 bits (332),  Expect(2) = 3e-31
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 4/133 (3%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ A      G  A+ VA   + GLK+     +  K ++  +    SNG R  CM+ W 
Sbjct  6    MSSAAVATRGNGAQASMVA--PFTGLKSAASFPVSRKQNLDIT-SIASNGGRVRCMQVWP  62

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP LSD  + KE+EY++K GW+PCLEF+ E G V REN++ PGYYDGR
Sbjct  63   PINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGR  122

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  123  YWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 3e-31
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVEE  146


>gi|417593|sp|P32764|RBS3_SOLTU  Ribulose bisphosphate carboxylase small chain 3, chloroplast 
precursor (RuBisCO small subunit 3)
 gi|21571|emb|CAA49417.1|  ribulose bisphosphate carboxylase [Solanum tuberosum]
Length=181

 Score =  132 bits (331),  Expect(2) = 4e-31
 Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK+     +  K++        SNG R  CM+ W P N KK+ETLSYLP LSD  + 
Sbjct  26   FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL  85

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            KE+EY++K GW+PCLEF+ E G V REN + PGYYDGRYWT+WKLP  G T
Sbjct  86   KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCT  136


 Score = 22.3 bits (46),  Expect(2) = 4e-31
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  132  MFGCTDATQVLAEVQE  147


>gi|92868775|gb|ABE78743.1|  Ribulose bisphosphate carboxylase, small chain [Medicago truncatula]
Length=180

 Score =  133 bits (334),  Expect = 5e-31
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R +CM+ W P   KKFETLSYLPPL++  +AKE+EY+++KGW+PCLEF+ E G V 
Sbjct  50   SNGGRVNCMQVWPPIGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWVPCLEFELEKGFVY  109

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            REN   PGYYDGRYWT+WKLP  GAT
Sbjct  110  RENHSSPGYYDGRYWTMWKLPLFGAT  135


>gi|132123|sp|P26576|RBSB_SOLTU  Ribulose bisphosphate carboxylase small chain 2B, chloroplast 
precursor (RuBisCO small subunit 2B)
 gi|21567|emb|CAA49415.1|  ribulose bisphosphate carboxylase [Solanum tuberosum]
Length=180

 Score =  131 bits (330),  Expect(2) = 6e-31
 Identities = 59/111 (53%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK+     +  K ++  +    SNG R  CM+ W P N KK+ETLSYLP LSD  + 
Sbjct  26   FTGLKSTASFPVSRKQNLDIT-SIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL  84

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            KE+EY++K GW+PCLEF+ E G V REN++ PGYYDGRYWT+WKLP  G T
Sbjct  85   KEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 6e-31
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVEE  146


>gi|10946379|gb|AAG24884.1|AF303941_1  ribulose-1,5-bisphosphate carboxylase small subunit rbcS3 [Glycine 
max]
Length=178

 Score =  130 bits (326),  Expect(2) = 6e-31
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R  CM+ W P   KKFETLSYLP L D  +AKE+EY+++KGWIPCLEF+ E G V 
Sbjct  48   SNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVY  107

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            RE++R PGYYDGRYWT+WKLP  G T
Sbjct  108  REHNRSPGYYDGRYWTMWKLPMFGCT  133


 Score = 23.9 bits (50),  Expect(2) = 6e-31
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC ++SQVL E+ E
Sbjct  129  MFGCTDASQVLKELQE  144


>gi|10946375|gb|AAG24882.1|AF303939_1  ribulose-1,5-bisphosphate carboxylase small subunit rbcS1 [Glycine 
max]
 gi|1055368|gb|AAA81328.1|  ribulose-1,5-bisphosphate carboxylase small subunit [Glycine 
max]
Length=178

 Score =  130 bits (326),  Expect(2) = 6e-31
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R  CM+ W P   KKFETLSYLP L D  +AKE+EY+++KGWIPCLEF+ E G V 
Sbjct  48   SNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVY  107

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            RE++R PGYYDGRYWT+WKLP  G T
Sbjct  108  REHNRSPGYYDGRYWTMWKLPMFGCT  133


 Score = 23.9 bits (50),  Expect(2) = 6e-31
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC ++SQVL E+ E
Sbjct  129  MFGCTDASQVLKELQE  144


>gi|10946377|gb|AAG24883.1|AF303940_1  ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 [Glycine 
max]
Length=178

 Score =  130 bits (326),  Expect(2) = 6e-31
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R  CM+ W P   KKFETLSYLP L D  +AKE+EY+++KGWIPCLEF+ E G V 
Sbjct  48   SNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVY  107

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            RE++R PGYYDGRYWT+WKLP  G T
Sbjct  108  REHNRSPGYYDGRYWTMWKLPMFGCT  133


 Score = 23.9 bits (50),  Expect(2) = 6e-31
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC ++SQVL E+ E
Sbjct  129  MFGCTDASQVLKELQE  144


>gi|92868774|gb|ABE78742.1|  Ribulose bisphosphate carboxylase, small chain [Medicago truncatula]
Length=177

 Score =  132 bits (333),  Expect = 6e-31
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R +CM+ W P   KKFETLSYLPPL++  +AKE+EY+++KGW+PCLEF+ E G V 
Sbjct  47   SNGGRVNCMQVWPPIGKKKFETLSYLPPLTEDQLAKEVEYLIRKGWVPCLEFELEKGFVY  106

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            REN   PGYYDGRYWT+WKLP  GAT
Sbjct  107  RENHSSPGYYDGRYWTMWKLPLFGAT  132


>gi|1405796|emb|CAA67061.1|  ribulose-bisphosphate carboxylase [Pteris vittata]
Length=174

 Score =  132 bits (333),  Expect = 6e-31
 Identities = 66/137 (48%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
 Frame = +1

Query  103  AVQLFLSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHC  282
            A  L     +AP  +A   AA     S+ GLK N        + +A     +SNGSR   
Sbjct  2    ATMLAAMAVSAPSCAA---AAESLSKSFSGLKANTLFAPKCANPLA-----ISNGSRISA  53

Query  283  MKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGY  462
            M  W P++NKKFETLSYLPPL++  IAK++EYM++KGW PC+EFD +G V RE+    GY
Sbjct  54   MLVWKPYDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGY  113

Query  463  YDGRYWTLWKLPWLGAT  513
            YDGRYW +WKLP  G T
Sbjct  114  YDGRYWIMWKLPMFGCT  130


>gi|132080|sp|P22433|RBS2_NICSY  Ribulose bisphosphate carboxylase small chain S41, chloroplast 
precursor (RuBisCO small subunit S41)
 gi|295823|emb|CAA37516.1|  NySS41 [Nicotiana sylvestris]
Length=181

 Score =  131 bits (329),  Expect(2) = 7e-31
 Identities = 63/135 (46%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
 Frame = +1

Query  115  FLSTPAAPKMSAGIFAAPVAG-SSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKT  291
            FL   +A  ++ G  AA  +  + + GLK+     +  K ++  +    SNG R  CM+ 
Sbjct  3    FLIMSSAAAVATGTNAAQASMIAPFTGLKSATSFPVSRKQNLDIT-SIASNGGRVQCMQV  61

Query  292  WNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYD  468
            W P N KK+ETLSYLP LS+  + +E+EY++K GW+PCLEF+ E G V REN++ PGYYD
Sbjct  62   WPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD  121

Query  469  GRYWTLWKLPWLGAT  513
            GRYWT+WKLP  G T
Sbjct  122  GRYWTMWKLPMFGCT  136


 Score = 22.3 bits (46),  Expect(2) = 7e-31
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  132  MFGCTDATQVLAEVEE  147


>gi|132079|sp|P08706|RBS1_LYCES  Ribulose bisphosphate carboxylase small chain 1, chloroplast 
precursor (RuBisCO small subunit 1) (LESS17)
 gi|170496|gb|AAA34188.1|  ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit
 gi|295814|emb|CAA29400.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum lycopersicum]
Length=181

 Score =  130 bits (328),  Expect(2) = 1e-30
 Identities = 66/133 (49%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ AA   S    A+ VA   + GLK+     +  K++        SNG R  CM+ W 
Sbjct  6    VSSAAAATRSNVAQASMVA--PFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWP  63

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP LSD  +  EIEY++K GW+PCLEF+ E G V REN+  PGYYDGR
Sbjct  64   PINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGR  123

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  124  YWTMWKLPMFGCT  136


 Score = 22.3 bits (46),  Expect(2) = 1e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  132  MFGCTDATQVLAEVQE  147


>gi|28139169|gb|AAO25119.1|  ribulose-1,5-bisphosphate carboxylase small subunit [Chrysanthemum 
x morifolium]
Length=179

 Score =  126 bits (317),  Expect(2) = 1e-30
 Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK+NV   +  K +   S    SNG R  CMK W P   KK+ETLSYLPPL++  +A
Sbjct  26   FTGLKSNVAFPVTKKSNDFSSLP--SNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLA  83

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLG  507
            KE+EY+++  W+PCLEF+ E G   REN+R PGYYDGRYWT+WKLP  G
Sbjct  84   KEVEYLLRNKWVPCLEFELEHGFPYRENNRSPGYYDGRYWTMWKLPMFG  132


 Score = 26.6 bits (57),  Expect(2) = 1e-30
 Identities = 10/16 (62%), Positives = 14/16 (87%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GCN++SQVL E++E
Sbjct  130  MFGCNDASQVLKELNE  145


>gi|3928152|emb|CAA10290.1|  ribulose 1,5-bisphosphate carboxylase small subunit [Cicer arietinum]
Length=181

 Score =  132 bits (331),  Expect = 1e-30
 Identities = 54/86 (62%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R HCM+ W P   KKFETLSYLPPL++  + KE+EY+++KGW+PCLEF+ E G V 
Sbjct  51   SNGGRVHCMQVWPPIGKKKFETLSYLPPLTEEQLLKEVEYLLRKGWVPCLEFELEKGFVY  110

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            RE++  PGYYDGRYWT+WKLP  G T
Sbjct  111  REHNNSPGYYDGRYWTMWKLPLFGCT  136


>gi|132104|sp|P07180|RBS3A_LYCES  Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplast 
precursor (RuBisCO small subunit 3A/3C)
 gi|19334|emb|CAA29402.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum lycopersicum]
 gi|19338|emb|CAA29404.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum lycopersicum]
 gi|170500|gb|AAA34190.1|  ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit
Length=180

 Score =  130 bits (327),  Expect(2) = 1e-30
 Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ A      G  A+ VA   + GLK+     +  K ++  +    SNG R  CM+ W 
Sbjct  6    MSSAAVATRGNGAQASMVA--PFTGLKSTASFPVSRKQNLDIT-SIASNGGRVSCMQVWP  62

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP LSD  +  EIEY++K GW+PCLEF+ E G V REN + PGYYDGR
Sbjct  63   PINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGR  122

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  123  YWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 1e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVQE  146


>gi|132147|sp|P05348|RBS_MAIZE  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|22474|emb|CAA29784.1|  ribulose-1,5-bisphosphate carboxylase (RuBPC) precursor [Zea 
mays]
 gi|217964|dbj|BAA00120.1|  ribulose 1,5-bisphosphate carboxylase small subunit [Zea mays]
 gi|359512|prf||1312317A  ribulosebisphosphate carboxylase
Length=170

 Score =  131 bits (330),  Expect = 1e-30
 Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
 Frame = +1

Query  160  AAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLP  339
            ++  A + + GLK+     LP     + S   VSNG R  CM+ W  + NKKFETLSYLP
Sbjct  9    SSATAVAPFQGLKSTAS--LPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLP  66

Query  340  PLSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLPWLG  507
            PLS   + K+++Y+++ GWIPCLEF +VG V RENS  P YYDGRYWT+WKLP  G
Sbjct  67   PLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFG  122


>gi|132095|sp|P07179|RBS2A_LYCES  Ribulose bisphosphate carboxylase small chain 2A, chloroplast 
precursor (RuBisCO small subunit 2A) (LESS 5)
 gi|170498|gb|AAA34189.1|  ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit 
(EC 4.1.1.39)
 gi|4456641|emb|CAA29401.2|  ribulose 1,5-bisphosphate carboxylase/oxygenase [Solanum lycopersicum]
Length=180

 Score =  130 bits (326),  Expect(2) = 2e-30
 Identities = 59/111 (53%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK++    +  K ++  +    SNG R  CM+ W P N KK+ETLSYLP LSD  + 
Sbjct  26   FTGLKSSATFPVTKKQNLDIT-SIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLL  84

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
             EIEY++K GW+PCLEF+ E G V REN++ PGYYDGRYWT+WKLP  G T
Sbjct  85   SEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 2e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVQE  146


>gi|132112|sp|P05349|RBS3B_LYCES  Ribulose bisphosphate carboxylase small chain 3B, chloroplast 
precursor (RuBisCO small subunit 3B)
 gi|19336|emb|CAA29403.1|  ribulose 1,5-bisphosphate carboxylase/oxyenase [Solanum lycopersicum]
 gi|218318|dbj|BAA01888.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit 
[Solanum lycopersicum]
Length=180

 Score =  130 bits (326),  Expect(2) = 2e-30
 Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ A      G  A+ VA   + GLK+     +  K ++  +    SNG R  CM+ W 
Sbjct  6    VSSAAVATRGNGAQASMVA--PFTGLKSTASFPVSRKQNLDIT-SIASNGGRVSCMQVWP  62

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP LSD  +  EIEY++K GW+PCLEF+ E G V REN + PGYYDGR
Sbjct  63   PINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGR  122

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  123  YWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 2e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVQE  146


>gi|1673456|emb|CAA70416.1|  rubisco small subunit [Zea mays]
Length=170

 Score =  131 bits (329),  Expect = 2e-30
 Identities = 60/118 (50%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
 Frame = +1

Query  160  AAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLP  339
            ++  A + + GLK+     LP       S   VSNG R  CM+ W  + NKKFETLSYLP
Sbjct  9    SSATAVAPFQGLKSAAS--LPVARRSTRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLP  66

Query  340  PLSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            PLS   + K+++Y+++ GWIPCLEF ++G V RENS  P YYDGRYWT+WKLP  G T
Sbjct  67   PLSTDDLLKQVDYLLRNGWIPCLEFSKLGFVYRENSTSPCYYDGRYWTMWKLPMFGCT  124


>gi|170504|gb|AAA34192.1|  ribulose-1,5-bisphosphate carboxylase, small subunit precursor
Length=180

 Score =  129 bits (325),  Expect(2) = 2e-30
 Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK++    +  K ++  +    SNG R  CM+ W P N KK+ETLSYLP LSD  + 
Sbjct  26   FTGLKSSATFPVTKKQNLDIT-SIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLL  84

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
             E+EY++K GW+PCLEF+ E G V REN++ PGYYDGRYWT+WKLP  G T
Sbjct  85   SEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 2e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVQE  146


>gi|132085|sp|P26574|RBS1_SOLTU  Ribulose bisphosphate carboxylase small chain 1, chloroplast 
precursor (RuBisCO small subunit 1)
 gi|21563|emb|CAA49413.1|  ribulose bisphosphate carboxylase [Solanum tuberosum]
Length=181

 Score =  129 bits (325),  Expect(2) = 2e-30
 Identities = 65/135 (48%), Positives = 82/135 (60%), Gaps = 17/135 (12%)
 Frame = +1

Query  160  AAPVAGSSYVGLKTNVPKL---------LPAKDSIAWSRKT-------VSNGSRTHCMKT  291
            A+ V  S+ V  +TNV +          L +  +   SRK         SNG R  CM+ 
Sbjct  2    ASSVISSAAVATRTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQV  61

Query  292  WNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYD  468
            W P N KK+ETLSYLP L+D  + KE+EY++K GW+PCLEF+ E G V REN + PGYYD
Sbjct  62   WPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYD  121

Query  469  GRYWTLWKLPWLGAT  513
            GRYWT+WKLP  G T
Sbjct  122  GRYWTMWKLPMFGCT  136


 Score = 22.3 bits (46),  Expect(2) = 2e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  132  MFGCTDATQVLAEVQE  147


>gi|585791|sp|Q08186|RBS6_MESCR  Ribulose bisphosphate carboxylase small chain 6, chloroplast 
precursor (RuBisCO small subunit 6)
 gi|304447|gb|AAA03698.1|  rubisco small subunit
Length=186

 Score =  130 bits (327),  Expect(2) = 3e-30
 Identities = 67/135 (49%), Positives = 86/135 (63%), Gaps = 5/135 (3%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            ++T AA + SAG  A+ VA   + GLK+     +  K S   S    SNG +  CM+ W 
Sbjct  11   VATTAASR-SAGAQASMVA--PFTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWP  66

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFDEV-GLVQRENSRIPGYYDGR  474
            P   KKFETLSYLPPLS+ S+ KE++Y++  GW+PCLEF+   G V RE+   PGYYDGR
Sbjct  67   PLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGR  126

Query  475  YWTLWKLPWLGATTP  519
            YWT+WKLP  G T P
Sbjct  127  YWTMWKLPMFGCTDP  141


 Score = 21.2 bits (43),  Expect(2) = 3e-30
 Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC + SQV+ E+ E
Sbjct  135  MFGCTDPSQVVAELEE  150


>gi|132071|sp|P10647|RBS0_SOLTU  Ribulose bisphosphate carboxylase small chain C, chloroplast 
precursor (RuBisCO small subunit C)
 gi|169557|gb|AAA33838.1|  ribulose bisphosphate carboxylase (EC 4.1.1.39)
Length=181

 Score =  129 bits (325),  Expect(2) = 3e-30
 Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK+     +  K++        SNG R  CM+ W P N KK+ETLSYLP LSD  + 
Sbjct  26   FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLL  85

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            KE+EY++K GW+PCLEF+ E G V RE++  PGYYDGRYWT+WKLP  G T
Sbjct  86   KEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCT  136


 Score = 21.9 bits (45),  Expect(2) = 3e-30
 Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC + +QVL E+ E
Sbjct  132  MFGCTDGTQVLAEVQE  147


>gi|170502|gb|AAA34191.1|  ribulose-1,5-bisphosphate carboxylase, small subunit precursor
Length=181

 Score =  129 bits (324),  Expect(2) = 3e-30
 Identities = 65/133 (48%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ AA   S    A+ VA   + GLK+     +  K++        SNG R  CM+ W 
Sbjct  6    VSSAAAATRSNVAQASMVA--PFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWP  63

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP  SD  +  EIEY++K GW+PCLEF+ E G V REN+  PGYYDGR
Sbjct  64   PINMKKYETLSYLPDFSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGR  123

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  124  YWTMWKLPMFGCT  136


 Score = 22.3 bits (46),  Expect(2) = 3e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  132  MFGCTDATQVLAEVQE  147


>gi|132086|sp|P00865|RBS1_SOYBN  Ribulose bisphosphate carboxylase small chain 1, chloroplast 
precursor (RuBisCO small subunit 1)
 gi|18742|emb|CAA23736.1|  rubpcase [Glycine max]
Length=178

 Score =  127 bits (320),  Expect(2) = 3e-30
 Identities = 55/86 (63%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R  CM+ W P   KKFETLSYLP L D  +AKE+EY+++KGWIPCLEF+ E G V 
Sbjct  48   SNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVY  107

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            RE++R P YYDGRYWT+WKLP  G T
Sbjct  108  REHNRSPXYYDGRYWTMWKLPMFGCT  133


 Score = 23.9 bits (50),  Expect(2) = 3e-30
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC ++SQVL E+ E
Sbjct  129  MFGCTDASQVLKELQE  144


>gi|30013663|gb|AAP03874.1|  putative ribulose bisphosphate carboxylase small subunit protein 
precursor [Nicotiana tabacum]
Length=180

 Score =  129 bits (325),  Expect(2) = 4e-30
 Identities = 65/134 (48%), Positives = 82/134 (61%), Gaps = 16/134 (11%)
 Frame = +1

Query  160  AAPVAGSSYVGLKTNVPKL--------LPAKDSIAWSRKT-------VSNGSRTHCMKTW  294
            A+ V  S+ V  +TNV +         L +  S   SRK         SNG R  CM+ W
Sbjct  2    ASSVLSSAAVATRTNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVW  61

Query  295  NPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDG  471
             P+  KK+ETLSYLP LS+  +  EIEY++K GW+PCLEF+ E G V REN++ PGYYDG
Sbjct  62   PPYGKKKYETLSYLPDLSEEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNKSPGYYDG  121

Query  472  RYWTLWKLPWLGAT  513
            RYWT+WKLP  G T
Sbjct  122  RYWTMWKLPMFGCT  135


 Score = 21.6 bits (44),  Expect(2) = 4e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVGE  146


>gi|3914585|sp|O22077|RBS_FAGCR  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|2588890|dbj|BAA23214.1|  small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase 
[Fagus crenata]
Length=182

 Score =  129 bits (324),  Expect(2) = 4e-30
 Identities = 69/150 (46%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
 Frame = +1

Query  73   ICSNTLTPVTAVQLFLSTPAAPKMSAGIFAAPVAGSSYVGLKTNV--PKLLPAKDSIAWS  246
            + S+ ++  T   +  +TPA   M A           + GLK+    P    + + I   
Sbjct  1    MASSMISSATVATVSRATPAQATMVA----------PFTGLKSTAAFPATRKSNNDIT--  48

Query  247  RKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EV  423
                SNG R  CMK W P   +KFETLSYLPPLS  S+AK+IEY++ KGWIPCLEF+ E 
Sbjct  49   -SLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEH  107

Query  424  GLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
              V REN+R PGYYDGRYW +WKLP  G T
Sbjct  108  PFVYRENNRSPGYYDGRYWVMWKLPMFGCT  137


 Score = 21.9 bits (45),  Expect(2) = 4e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  133  MFGCTDATQVLAELQE  148


>gi|3914608|sp|Q42915|RBS_MANES  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|168363|gb|AAA99429.1|  ribulose 1,5-bisphosphate carboxylase
 gi|6272549|gb|AAF06099.1|  ribulose 1,5-bisphosphate carboxylase small chain precursor [Manihot 
esculenta]
Length=182

 Score =  129 bits (323),  Expect(2) = 4e-30
 Identities = 65/148 (43%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
 Frame = +1

Query  73   ICSNTLTPVTAVQLFLSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRK  252
            + S+ L+  T   +   +PA   M A           + GLK+  P     + + +    
Sbjct  1    MASSMLSTATVASINRVSPAQATMVA----------PFTGLKST-PVFPTTRKTNSDITS  49

Query  253  TVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGL  429
              SNG +  CMK W     KKFETLSYLPPL+   +A E+EY+++ GWIPCLEF+ E GL
Sbjct  50   ITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGL  109

Query  430  VQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            V RE++R+PGYYDGRYWT+WKLP  G T
Sbjct  110  VYREHARVPGYYDGRYWTMWKLPMFGCT  137


 Score = 22.3 bits (46),  Expect(2) = 4e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  133  MFGCTDAAQVLKELDE  148


>gi|3914607|sp|Q41373|RBS_SACHY  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|485507|pir||S33613  ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain precursor 
- sugarcane
 gi|169842|gb|AAA33922.1|  ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit 
[Saccharum hybrid cultivar H32-8560]
Length=168

 Score =  129 bits (324),  Expect(2) = 4e-30
 Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = +1

Query  160  AAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLP  339
            ++  A + + GLK+     LP       S   VSNG R  CM+ W  + NKKFETLSYLP
Sbjct  8    SSATAAAPFQGLKSTAS--LPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLP  65

Query  340  PLSDHSIAKEIEYMMKKGWIPCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            PL+   + K+++Y+++  W+PCLEF + G V RENS  P YYDGRYWT+WKLP  G T
Sbjct  66   PLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCT  123


 Score = 21.9 bits (45),  Expect(2) = 4e-30
 Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC ++SQV  E+ E
Sbjct  119  MFGCTDASQVYKELQE  134


>gi|6635351|gb|AAF19793.1|AF162210_1  ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 
[Lactuca sativa]
Length=181

 Score =  130 bits (326),  Expect = 4e-30
 Identities = 65/132 (49%), Positives = 84/132 (63%), Gaps = 12/132 (9%)
 Frame = +1

Query  121  STPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNP  300
            STPA   ++A           + GLK+NV   +  K +  +S    SNG R  CMK W P
Sbjct  15   STPAQASLAA----------PFTGLKSNVAFPVTKKANNDFS-SLPSNGGRVQCMKVWPP  63

Query  301  FNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRY  477
               KK+ETLSYLPPLSD +++KEI+Y+++  W+PCLEF+ E G V RE+   PGYYDGRY
Sbjct  64   IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRY  123

Query  478  WTLWKLPWLGAT  513
            WT+WKLP  G T
Sbjct  124  WTMWKLPMFGCT  135


>gi|51949879|gb|AAU14862.1|  chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small 
subunit [Fagus sylvatica]
Length=181

 Score =  129 bits (323),  Expect(2) = 5e-30
 Identities = 69/150 (46%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
 Frame = +1

Query  73   ICSNTLTPVTAVQLFLSTPAAPKMSAGIFAAPVAGSSYVGLKTNV--PKLLPAKDSIAWS  246
            + S+ ++  T   +  +TPA   M A           + GLK+    P    + + I   
Sbjct  1    MASSMISSATVATVSRATPAQATMVA----------PFTGLKSTAAFPATQKSNNDIT--  48

Query  247  RKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EV  423
                SNG R  CMK W P   +KFETLSYLPPLS  S+AK+IEY++ KGWIPCLEF+ E 
Sbjct  49   -SLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSLESLAKQIEYLILKGWIPCLEFELEH  107

Query  424  GLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
              V REN+R PGYYDGRYW +WKLP  G T
Sbjct  108  PFVYRENNRSPGYYDGRYWVMWKLPMFGCT  137


 Score = 21.9 bits (45),  Expect(2) = 5e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  133  MFGCTDATQVLAELQE  148


>gi|132113|sp|P12468|RBS4_SOYBN  Ribulose bisphosphate carboxylase small chain 4, chloroplast 
precursor (RuBisCO small subunit 4)
 gi|170058|gb|AAA34008.1|  ribulose 1,5-bisphosphate carboxylase
 gi|225579|prf||1306410A  ribulose bisphosphate carboxylase S
Length=178

 Score =  127 bits (318),  Expect(2) = 5e-30
 Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK+     LP + +        SNG R  CM+ W P   KKFETLSYLP L D  +A
Sbjct  25   FTGLKSMAG--LPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLA  82

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            KE+EY+++KGWIPCLEF+ E G V RE++R  GYYDGRYWT+WKLP  G T
Sbjct  83   KEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCT  133


 Score = 23.9 bits (50),  Expect(2) = 5e-30
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC ++SQVL E+ E
Sbjct  129  MFGCTDASQVLKELQE  144


>gi|3914599|sp|O48550|RBS_ZANAE  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|2665670|gb|AAC18406.1|  ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 
[Zantedeschia aethiopica]
Length=178

 Score =  125 bits (315),  Expect(2) = 5e-30
 Identities = 54/98 (55%), Positives = 66/98 (67%), Gaps = 0/98 (0%)
 Frame = +1

Query  220  PAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWI  399
            P     A S K  SNG R  CM+ W P   KKFETLSYLPPL+   + +E++Y+++ GWI
Sbjct  36   PVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWI  95

Query  400  PCLEFDEVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            PC+EF +VG V RE    PGYYDGRYWT+WKLP  G T
Sbjct  96   PCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCT  133


 Score = 25.0 bits (53),  Expect(2) = 5e-30
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +SSQVL E+ E
Sbjct  129  MFGCTDSSQVLKEVDE  144


>gi|132145|sp|P08705|RBS_HELAN  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|18808|emb|CAA68490.1|  ribulose bisphosphate carboxylase [Helianthus annuus]
 gi|755735|emb|CAA28737.1|  RuBisCO (SSU) [Helianthus annuus]
Length=178

 Score =  129 bits (325),  Expect = 5e-30
 Identities = 59/111 (53%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
 Frame = +1

Query  184  YVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIA  363
            + GLK+N     P            SNG R  CMK W P   KK+ETLSYLPPL++  +A
Sbjct  25   FTGLKSNAA--FPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLA  82

Query  364  KEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGRYWTLWKLPWLGAT  513
            KE++Y+++K W+PCLEF+ E G V REN+R PGYYDGRYWT+WKLP  G T
Sbjct  83   KEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCT  133


>gi|3914606|sp|Q41351|RBS_STELP  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|556418|gb|AAA69018.1|  ribulose 1,5-bisphosphate carboxylase small subunit
Length=180

 Score =  129 bits (325),  Expect = 5e-30
 Identities = 65/133 (48%), Positives = 84/133 (63%), Gaps = 4/133 (3%)
 Frame = +1

Query  118  LSTPAAPKMSAGIFAAPVAGSSYVGLKTNVPKLLPAKDSIAWSRKTVSNGSRTHCMKTWN  297
            +S+ A    S G  A+ VA   + GLK+N    +  K ++  +    SNG R  CM+ W 
Sbjct  6    MSSAAVATRSNGAQASMVA--PFTGLKSNASFPVSRKTNLDIT-SIASNGGRVRCMQVWP  62

Query  298  PFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDGR  474
            P N KK+ETLSYLP LS   +  EIEY++K GW+PCLEF+ E G V RE++  PGYYDGR
Sbjct  63   PINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGR  122

Query  475  YWTLWKLPWLGAT  513
            YWT+WKLP  G T
Sbjct  123  YWTMWKLPMFGCT  135


>gi|59800169|sp|P69249|RBS_TOBAC  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit) (TSSU3-8)
 gi|59800184|sp|P69250|RBS1_NICSY  Ribulose bisphosphate carboxylase small chain, chloroplast precursor 
(RuBisCO small subunit)
 gi|19760|emb|CAA25862.1|  unnamed protein product [Nicotiana sylvestris]
 gi|20024|emb|CAA26208.1|  small subunit ribulose 1,5-bisphosphate carboxylase [Nicotiana 
tabacum]
 gi|224384|prf||1103193A  carboxylase,RBP
Length=180

 Score =  128 bits (321),  Expect(2) = 6e-30
 Identities = 64/134 (47%), Positives = 81/134 (60%), Gaps = 16/134 (11%)
 Frame = +1

Query  160  AAPVAGSSYVGLKTNVPKL--------LPAKDSIAWSRKT-------VSNGSRTHCMKTW  294
            A+ V  S+ V  ++NV +         L +  S   SRK         SNG R  CM+ W
Sbjct  2    ASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVW  61

Query  295  NPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQRENSRIPGYYDG  471
             P N KK+ETLSYLP LS   +  E+EY++K GW+PCLEF+ E G V REN++ PGYYDG
Sbjct  62   PPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDG  121

Query  472  RYWTLWKLPWLGAT  513
            RYWT+WKLP  G T
Sbjct  122  RYWTMWKLPMFGCT  135


 Score = 22.3 bits (46),  Expect(2) = 6e-30
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
 Frame = +3

Query  498  MVGCNNSSQVLNEIHE  545
            M GC +++QVL E+ E
Sbjct  131  MFGCTDATQVLAEVEE  146


>gi|1079736|gb|AAA82069.1|  ribulose 1,5-bisphosphate carboxylase small subunit precursor
Length=178

 Score =  126 bits (317),  Expect(2) = 6e-30
 Identities = 55/86 (63%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
 Frame = +1

Query  259  SNGSRTHCMKTWNPFNNKKFETLSYLPPLSDHSIAKEIEYMMKKGWIPCLEFD-EVGLVQ  435
            SNG R  CM+ W P   KKFETLSYLP L D  +AKE+EY+++KGWIPCLEF+ E G V 
Sbjct  48   SNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVY  107

Query  436  RENSRIPGYYDGRYWTLWKLPWLGAT  513
            RE++R PGYYDGR WT+WKLP  G T
Sbjct  108  REHNRSPGYYDGRCWTMWKLPMFGCT  133
Distribution of 176 Blast Hits on the Query Sequence
