Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930265-21058-177292522989.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig39 Length=424
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|115482800|ref|NP_001064993.1| Os10g0502600 [Oryza sativa (... 177 7e-53 gi|4960154|gb|AAD34615.1|AF153283_1 putative progesterone-bin... 184 1e-52 gi|15229044|ref|NP_190458.1| ATMP2 [Arabidopsis thaliana] >gi... 184 1e-52 gi|82780762|gb|ABB90550.1| putative steroid membrane binding pro 174 4e-51 gi|4960156|gb|AAD34616.1|AF153284_1 putative progesterone-bin... 173 8e-49 gi|15242943|ref|NP_200037.1| MSBP1 [Arabidopsis thaliana] >gi... 173 1e-48 gi|115447533|ref|NP_001047546.1| Os02g0640300 [Oryza sativa (... 163 3e-47 gi|115482798|ref|NP_001064992.1| Os10g0502500 [Oryza sativa (... 151 1e-42 gi|115452713|ref|NP_001049957.1| Os03g0321000 [Oryza sativa (... 129 3e-30 gi|53748439|emb|CAH59414.1| hypothetical protein [Plantago major 100 2e-23 gi|115449183|ref|NP_001048371.1| Os02g0793700 [Oryza sativa (... 97.8 5e-21 gi|48425750|pdb|1T0G|A Chain A, Hypothetical Protein At2g2494... 91.7 8e-19 gi|40889041|pdb|1J03|A Chain A, Solution Structure Of A Putat... 90.9 1e-18 gi|15224648|ref|NP_180066.1| unknown protein [Arabidopsis tha... 90.9 1e-18 gi|116057944|emb|CAL54147.1| Putative steroid membrane recept... 88.2 9e-18 gi|18414350|ref|NP_567451.1| unknown protein [Arabidopsis tha... 67.0 2e-11 gi|21536603|gb|AAM60935.1| unknown [Arabidopsis thaliana] 66.6 3e-11 gi|24417258|gb|AAN60239.1| unknown [Arabidopsis thaliana] 66.6 3e-11 gi|38016533|gb|AAR07602.1| fiber protein Fb38 [Gossypium barbade 65.9 5e-11 gi|38637200|dbj|BAD03451.1| steroid membrane binding protein-... 64.7 1e-10 gi|115451427|ref|NP_001049314.1| Os03g0205500 [Oryza sativa (... 58.2 1e-08 gi|5302775|emb|CAB46053.1| hypothetical protein [Arabidopsis ... 57.8 1e-08 gi|116060186|emb|CAL56245.1| Putative steroid membrane recept... 43.5 2e-04 gi|75755967|gb|ABA27039.1| TO82a-3 [Taraxacum officinale] 42.7 4e-04 gi|108706748|gb|ABF94543.1| cytochrome b5 domain-containing p... 35.4 0.068 gi|71068109|gb|AAZ23034.1| delta-6 desaturase-related protein... 34.7 0.12 gi|30350277|gb|AAP23034.1| fatty acid delta-6 desaturase [Primul 33.9 0.20 gi|30350275|gb|AAP23033.1| sphingolipid delta-8 desaturase [Prim 33.5 0.26 gi|30350281|gb|AAP23036.1| fatty acid delta-6 desaturase [Primul 32.3 0.57 gi|71068111|gb|AAZ23035.1| delta-6 desaturase [Echium sabulicola 31.2 1.3 gi|92868038|gb|ABE78138.1| RNA-directed DNA polymerase (Rever... 30.8 1.7 gi|22652111|gb|AAN03619.1|AF406816_1 sphingolipid long chain ... 30.8 1.7 gi|18403775|ref|NP_565801.1| ATP binding / DNA binding [Arabi... 30.8 1.7 gi|70795233|gb|AAZ08559.1| delta-6 desaturase [Echium plantagine 30.8 1.7 gi|92876082|gb|ABE83827.1| RNA-directed DNA polymerase (Rever... 30.0 2.8 gi|93280154|gb|ABF06705.1| Joka8 [Nicotiana plumbaginifolia] 29.6 3.7 gi|15235978|ref|NP_193447.1| unknown protein [Arabidopsis tha... 29.6 3.7 gi|115467948|ref|NP_001057573.1| Os06g0342600 [Oryza sativa (... 29.3 4.9 gi|57900267|dbj|BAD87085.1| putative serine/threonine Kinase ... 28.9 6.3 gi|115440771|ref|NP_001044665.1| Os01g0824600 [Oryza sativa (... 28.9 6.3 gi|116058719|emb|CAL54426.1| 1,3-beta-glucan synthase/callose... 28.5 8.3 gi|92879639|gb|ABE85658.1| Cyclin-like F-box [Medicago truncatul 28.5 8.3 gi|6692693|gb|AAF24827.1|AC007592_20 F12K11.6 [Arabidopsis thali 28.5 8.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 304 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 424 Length of database: 101054579 Length adjustment: 102 Effective length of query: 322 Effective length of database: 72152981 Effective search space: 2813966259 Effective search space used: 2813966259 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)