Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169016167-30808-88713147786.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig393 Length=424
Score E Sequences producing significant alignments: (Bits) Value gi|829279|emb|CAA31967.1| histone H3 (AA 1-120) [Medicago sativa 231 6e-61 gi|488573|gb|AAB36496.1| histone H3.2 precursor [Medicago sativa 231 6e-61 gi|488571|gb|AAB36495.1| histone H3.2 [Medicago sativa] 231 6e-61 gi|15236103|ref|NP_195713.1| DNA binding [Arabidopsis thalian... 231 6e-61 gi|18698662|gb|AAL78367.1|AF467728_1 disease-resistent-related p 229 2e-60 gi|62642119|gb|AAX92698.1| histone 3 [Picea abies] 229 2e-60 gi|92880832|gb|ABE85856.1| Histone core [Medicago truncatula] 229 3e-60 gi|119370646|sp|Q402E2|H33A_LILLO Histone H3.3a (Somatic-like... 227 1e-59 gi|15222297|ref|NP_177690.1| DNA binding [Arabidopsis thalian... 226 3e-59 gi|4574208|gb|AAD23951.1|AF093108_1 histone H3 [Tortula ruralis] 226 3e-59 gi|116060503|emb|CAL55839.1| Histones H3 and H4 (ISS) [Ostreococ 224 8e-59 gi|116057937|emb|CAL54140.1| Histones H3 and H4 (ISS) [Ostreococ 224 8e-59 gi|21555021|gb|AAM63756.1| histone H3 protein, putative [Arabido 224 8e-59 gi|15222272|ref|NP_172794.1| DNA binding [Arabidopsis thalian... 224 8e-59 gi|10732809|gb|AAG22548.1|AF304365_1 histone H3 [Rubus idaeus] 223 1e-58 gi|82568471|dbj|BAE48436.1| histone soH3-2 [Lilium longiflorum] 223 2e-58 gi|15232146|ref|NP_189372.1| DNA binding [Arabidopsis thalian... 222 3e-58 gi|60543010|dbj|BAD90754.1| histone 3 [Conocephalum conicum] ... 222 4e-58 gi|33772147|gb|AAQ54510.1| histone 3 [Malus x domestica] 222 4e-58 gi|19611|emb|CAA31966.1| histone H3 (AA 1-123) [Medicago sati... 222 4e-58 gi|55977041|sp|P68427|H32_PEA Histone H3.2 >gi|55977043|sp|P6... 222 4e-58 gi|62642121|gb|AAX92699.1| histone 3 [Picea abies] >gi|626421... 221 5e-58 gi|122045178|sp|P08903|H32_ENCAL Histone H3.2 221 7e-58 gi|224865|prf||1202289A histone H3 221 7e-58 gi|166384|gb|AAA32655.1| histone H3 (H3-1.1) 220 1e-57 gi|55775689|gb|AAV65112.1| histone 3 [Camellia sinensis] 220 1e-57 gi|9369379|gb|AAF87128.1|AC006434_24 F10A5.19 [Arabidopsis thali 220 1e-57 gi|72398503|gb|AAZ72657.1| histone H3.3 [Craterostigma plantagin 220 1e-57 gi|169793|gb|AAA33907.1| histone 3 >gi|940018|gb|AAA74190.1| his 219 3e-57 gi|122090|sp|P08437|H3_VOLCA Histone H3 >gi|2119017|pir||S595... 219 3e-57 gi|60543120|dbj|BAD90809.1| histone 3 [Conocephalum conicum] 218 4e-57 gi|119370645|sp|Q402E1|H32_LILLO Histone H3.2 >gi|73808028|db... 218 6e-57 gi|576633|gb|AAA98455.1| histone H3 218 7e-57 gi|68342452|gb|AAY90124.1| histone 3 [Rheum australe] 217 1e-56 gi|62701879|gb|AAX92952.1| histone H3 - maize [Oryza sativa (jap 217 1e-56 gi|15238430|ref|NP_201338.1| DNA binding [Arabidopsis thalian... 215 5e-56 gi|72384424|gb|AAZ67540.1| 4D11_26 [Brassica rapa subsp. pekinen 214 6e-56 gi|1708109|sp|P50564|H3_CHLRE Histone H3 >gi|790700|gb|AAA99965. 214 1e-55 gi|1053047|gb|AAB03538.1| histone H3 >gi|1053049|gb|AAB03539.... 213 1e-55 gi|82568467|dbj|BAE48434.1| histone soH3-1 [Lilium longiflorum] 213 1e-55 gi|119370647|sp|Q2Z2F4|H33B_LILLO Histone H3.3b (Somatic-like... 213 1e-55 gi|1053057|gb|AAB03542.1| histone H3 213 2e-55 gi|60543098|dbj|BAD90798.1| histone 3 [Conocephalum conicum] 211 5e-55 gi|1053045|gb|AAB03537.1| histone H3 211 5e-55 gi|1053059|gb|AAB03543.1| histone H3 209 2e-54 gi|60543064|dbj|BAD90781.1| histone 3 [Conocephalum conicum] 209 3e-54 gi|60543056|dbj|BAD90777.1| histone 3 [Conocephalum conicum] ... 209 3e-54 gi|73919914|sp|Q5MYA4|H32_CICIN Histone H3.2 >gi|40217937|gb|... 207 8e-54 gi|60543076|dbj|BAD90787.1| histone 3 [Conocephalum conicum] 206 3e-53 gi|1197519|emb|CAA64881.1| histone H3 [Narcissus pseudonarcissus 206 3e-53 gi|15223698|ref|NP_173418.1| DNA binding [Arabidopsis thalian... 205 4e-53 gi|60543106|dbj|BAD90802.1| histone 3 [Conocephalum conicum] 204 8e-53 gi|60543104|dbj|BAD90801.1| histone 3 [Conocephalum conicum] 204 1e-52 gi|60543046|dbj|BAD90772.1| histone 3 [Conocephalum supradecompo 204 1e-52 gi|60543042|dbj|BAD90770.1| histone 3 [Conocephalum supradecompo 204 1e-52 gi|60543048|dbj|BAD90773.1| histone 3 [Conocephalum supradecompo 204 1e-52 gi|60543086|dbj|BAD90792.1| histone 3 [Marchantia polymorpha] 204 1e-52 gi|73919917|sp|Q5DWI3|H3_MARPO Histone H3 >gi|60543034|dbj|BA... 204 1e-52 gi|60543040|dbj|BAD90769.1| histone 3 [Conocephalum supradecompo 203 1e-52 gi|60543012|dbj|BAD90755.1| histone 3 [Conocephalum conicum] 203 1e-52 gi|60543074|dbj|BAD90786.1| histone 3 [Conocephalum conicum] 203 2e-52 gi|60543018|dbj|BAD90758.1| histone 3 [Conocephalum conicum] ... 202 2e-52 gi|60543032|dbj|BAD90765.1| histone 3 [Conocephalum conicum] 202 2e-52 gi|60543024|dbj|BAD90761.1| histone 3 [Conocephalum conicum] 202 3e-52 gi|60543082|dbj|BAD90790.1| histone 3 [Marchantia polymorpha] 202 3e-52 gi|60543020|dbj|BAD90759.1| histone 3 [Conocephalum conicum] 202 3e-52 gi|60543058|dbj|BAD90778.1| histone 3 [Conocephalum conicum] 202 3e-52 gi|60543070|dbj|BAD90784.1| histone 3 [Conocephalum conicum] 202 4e-52 gi|60543118|dbj|BAD90808.1| histone 3 [Conocephalum conicum] 201 5e-52 gi|60543110|dbj|BAD90804.1| histone 3 [Conocephalum conicum] 201 7e-52 gi|60543084|dbj|BAD90791.1| histone 3 [Marchantia polymorpha] 201 7e-52 gi|60543052|dbj|BAD90775.1| histone 3 [Conocephalum supradecompo 201 7e-52 gi|47496935|dbj|BAD20005.1| putative histone H3.2 [Oryza sativa 201 7e-52 gi|60543014|dbj|BAD90756.1| histone 3 [Conocephalum conicum] 201 9e-52 gi|60543030|dbj|BAD90764.1| histone 3 [Conocephalum conicum] 201 9e-52 gi|60543116|dbj|BAD90807.1| histone 3 [Conocephalum conicum] 200 1e-51 gi|60543068|dbj|BAD90783.1| histone 3 [Conocephalum conicum] 200 1e-51 gi|60543080|dbj|BAD90789.1| histone 3 [Marchantia polymorpha] 199 2e-51 gi|60543112|dbj|BAD90805.1| histone 3 [Conocephalum conicum] 199 2e-51 gi|60543036|dbj|BAD90767.1| histone 3 [Conocephalum supradecompo 199 3e-51 gi|1053053|gb|AAB03541.1| histone H3 198 6e-51 gi|60543050|dbj|BAD90774.1| histone 3 [Conocephalum supradecompo 197 8e-51 gi|60543102|dbj|BAD90800.1| histone 3 [Conocephalum conicum] 196 2e-50 gi|34101261|gb|AAQ57668.1| histone H3-D [Amphicarpaea bractea... 196 2e-50 gi|60543028|dbj|BAD90763.1| histone 3 [Conocephalum conicum] 194 7e-50 gi|12641619|emb|CAC27454.1| histone H3 [Beta vulgaris subsp. vul 194 1e-49 gi|76362311|dbj|BAE45284.1| histone [Cornopteris decurrenti-alat 194 1e-49 gi|76362313|dbj|BAE45285.1| histone [Nephrolepis auriculata] 192 3e-49 gi|34101298|gb|AAQ57676.1| histone H3-D [Amphicarpaea bracteata] 190 1e-48 gi|115488324|ref|NP_001066649.1| Os12g0415800 [Oryza sativa (... 190 1e-48 gi|34101265|gb|AAQ57670.1| histone H3-D [Amphicarpaea bracteata] 188 5e-48 gi|47496932|dbj|BAD20002.1| putative histone H3.2 [Oryza sativa 187 1e-47 gi|60543078|dbj|BAD90788.1| histone 3 [Marchantia polymorpha] 186 2e-47 gi|34101270|gb|AAQ57671.1| histone H3-D [Amphicarpaea bracteata] 186 3e-47 gi|60543066|dbj|BAD90782.1| histone 3 [Conocephalum conicum] 183 2e-46 gi|76362293|dbj|BAE45275.1| histone [Conocephalum conicum] 183 2e-46 gi|92877453|gb|ABE84561.1| Histone H3; Histone-fold [Medicago tr 178 5e-45 gi|76362285|dbj|BAE45271.1| histone [Conocephalum conicum] 177 8e-45 gi|115488322|ref|NP_001066648.1| Os12g0415400 [Oryza sativa (... 173 2e-43 gi|76362289|dbj|BAE45273.1| histone [Conocephalum conicum] 171 6e-43
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 387 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 424 Length of database: 101065385 Length adjustment: 102 Effective length of query: 322 Effective length of database: 72158891 Effective search space: 2814196749 Effective search space used: 2814196749 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)