Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169016223-6771-209125187697.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig396 Length=501
Score E Sequences producing significant alignments: (Bits) Value gi|15230734|ref|NP_187304.1| RNA binding [Arabidopsis thalian... 79.7 5e-15 gi|4337176|gb|AAD18097.1| T31J12.4 [Arabidopsis thaliana] 77.0 3e-14 gi|42561856|ref|NP_172403.3| RNA binding [Arabidopsis thalian... 77.0 3e-14 gi|51971128|dbj|BAD44256.1| unknown protein [Arabidopsis thalian 77.0 3e-14 gi|15221452|ref|NP_172123.1| RNA binding [Arabidopsis thalian... 65.5 1e-10 gi|92874667|gb|ABE82901.1| Agenet [Medicago truncatula] 63.9 3e-10 gi|52353666|gb|AAU44232.1| hypothetical protein [Oryza sativa (j 63.9 3e-10 gi|15226533|ref|NP_182245.1| RNA binding [Arabidopsis thalian... 55.5 1e-07 gi|6554201|gb|AAF16647.1|AC011661_25 T23J18.9 [Arabidopsis thali 52.8 6e-07 gi|15220379|ref|NP_172609.1| RNA binding [Arabidopsis thaliana] 52.8 6e-07 gi|115476528|ref|NP_001061860.1| Os08g0431100 [Oryza sativa (... 52.0 1e-06 gi|37805921|dbj|BAC99338.1| unknown protein [Oryza sativa (ja... 52.0 1e-06 gi|15222723|ref|NP_173976.1| RNA binding [Arabidopsis thalian... 51.6 1e-06 gi|6899940|emb|CAB71890.1| putative protein [Arabidopsis thalian 50.8 2e-06 gi|30695584|ref|NP_191789.2| RNA binding [Arabidopsis thalian... 50.8 2e-06 gi|15237832|ref|NP_197769.1| RNA binding [Arabidopsis thalian... 49.3 7e-06 gi|62732801|gb|AAX94920.1| Agenet domain, putative [Oryza sat... 48.5 1e-05 gi|30697711|ref|NP_177025.2| DNA binding / RNA binding [Arabi... 47.8 2e-05 gi|5734720|gb|AAD49985.1|AC008075_18 Contains PF|01426 BAH (b... 47.8 2e-05 gi|89257526|gb|ABD65016.1| Agenet domain containing protein [Bra 47.4 3e-05 gi|92867379|gb|ABE77691.1| Agenet [Medicago truncatula] >gi|9... 47.0 4e-05 gi|92874017|gb|ABE82342.1| Agenet [Medicago truncatula] 46.6 5e-05 gi|92867381|gb|ABE77693.1| Agenet [Medicago truncatula] >gi|9... 44.7 2e-04 gi|51091512|dbj|BAD36250.1| agenet domain-containing protein ... 43.1 5e-04 gi|22327858|ref|NP_200371.2| DNA binding / RNA binding [Arabi... 42.7 7e-04 gi|77551450|gb|ABA94247.1| Agenet domain containing protein [... 42.7 7e-04 gi|9758594|dbj|BAB09227.1| unnamed protein product [Arabidopsis 42.7 7e-04 gi|92894759|gb|ABE92374.1| Cyclin-like F-box; Agenet [Medicago t 42.4 9e-04 gi|110737699|dbj|BAF00788.1| hypothetical protein [Arabidopsis t 41.6 0.001 gi|92879072|gb|ABE85345.1| Cyclin-like F-box; Agenet [Medicago t 41.2 0.002 gi|15218770|ref|NP_171829.1| RNA binding [Arabidopsis thalian... 40.0 0.004 gi|22328747|ref|NP_193464.2| ATG2484-1; RNA binding [Arabidop... 37.0 0.037 gi|87241252|gb|ABD33110.1| protein T31J12.4 [imported] - Arab... 37.0 0.037 gi|2664214|emb|CAA10906.1| G2484-1 [Arabidopsis thaliana] 37.0 0.037 gi|115479095|ref|NP_001063141.1| Os09g0408500 [Oryza sativa (... 36.6 0.048 gi|51091514|dbj|BAD36252.1| agenet domain-containing protein ... 36.6 0.048 gi|15237826|ref|NP_197767.1| RNA binding [Arabidopsis thalian... 36.2 0.062 gi|15237825|ref|NP_197766.1| RNA binding [Arabidopsis thalian... 35.4 0.11 gi|110739535|dbj|BAF01676.1| hypothetical protein [Arabidopsis t 35.0 0.14 gi|115468804|ref|NP_001058001.1| Os06g0600700 [Oryza sativa (... 34.3 0.24 gi|87241249|gb|ABD33107.1| Cyclin-like F-box; Agenet [Medicago t 34.3 0.24 gi|50725037|dbj|BAD32839.1| agenet domain-containing protein-... 34.3 0.24 gi|115483404|ref|NP_001065372.1| Os10g0559600 [Oryza sativa (... 33.9 0.31 gi|110289566|gb|ABG66256.1| Agenet domain containing protein,... 33.9 0.31 gi|57899247|dbj|BAD87492.1| hypothetical protein [Oryza sativ... 33.5 0.40 gi|78708589|gb|ABB47564.1| Agenet domain containing protein [... 33.5 0.40 gi|115444929|ref|NP_001046244.1| Os02g0204500 [Oryza sativa (... 33.1 0.53 gi|46390520|dbj|BAD16008.1| putative agenet domain-containing... 33.1 0.53 gi|115473271|ref|NP_001060234.1| Os07g0607300 [Oryza sativa (... 32.3 0.90 gi|50508663|dbj|BAD31149.1| putative agenet domain-containing... 32.3 0.90 gi|42573127|ref|NP_974660.1| RNA binding [Arabidopsis thalian... 32.0 1.2 gi|15236804|ref|NP_194970.1| RNA binding [Arabidopsis thalian... 32.0 1.2 gi|15224760|ref|NP_180130.1| RNA binding [Arabidopsis thalian... 31.6 1.5 gi|30697709|ref|NP_849862.1| DNA binding / RNA binding [Arabidop 31.6 1.5 gi|92895175|gb|ABE92607.1| Agenet [Medicago truncatula] 30.8 2.6 gi|92878850|gb|ABE85254.1| Cyclin-like F-box; Agenet [Medicago t 30.4 3.4 gi|15237720|ref|NP_200669.1| DNA binding / N-acetyltransferas... 30.4 3.4 gi|8843783|dbj|BAA97331.1| unnamed protein product [Arabidopsis 30.4 3.4 gi|18873854|gb|AAL79800.1|AC079874_23 unknown protein [Oryza ... 30.0 4.5 gi|2808464|emb|CAA11428.1| alpha-hydroxynitrile lyase [Manihot e 29.6 5.8 gi|2245092|emb|CAB10514.1| hypothetical protein [Arabidopsis ... 29.6 5.8 gi|110737386|dbj|BAF00637.1| hypothetical protein [Arabidopsis t 29.3 7.6 gi|92872866|gb|ABE81401.1| Agenet [Medicago truncatula] 28.9 10.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 326 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 501 Length of database: 101065385 Length adjustment: 105 Effective length of query: 396 Effective length of database: 71308700 Effective search space: 4421139400 Effective search space used: 4421139400 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)