RID=1168930444-30012-34437442765.BLASTQ1, Contig42

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930444-30012-34437442765.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig42
Length=304

Distribution of 30 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|57282269|emb|CAD32363.1|  cytochrome oxidase subunit 3 [Campyn  30.0    2.5  
gi|14193|emb|CAA37719.1|  cytochrome-c oxidase subunit III [Physc  29.3    4.3  
gi|115488266|ref|NP_001066620.1|  Os12g0299500 [Oryza sativa (...  28.9    5.7   
gi|49147192|ref|YP_025785.1|  cytochrome c oxidase subunit 3 [...  28.9    5.7   
gi|76780580|emb|CAD92020.1|  cytochrome oxidase subunit 3 [Chamae  28.9    5.7  
gi|32483247|emb|CAE02548.1|  OSJNBb0069N01.14 [Oryza sativa (japo  28.5    7.4   
gi|115448549|ref|NP_001048054.1|  Os02g0736500 [Oryza sativa (...  28.5    7.4   
gi|115477875|ref|NP_001062533.1|  Os08g0564800 [Oryza sativa (...  28.5    7.4   
gi|116310893|emb|CAH67833.1|  B0616E02-H0507E05.9 [Oryza sativa (  28.1    9.7  
gi|60498734|dbj|BAC19853.2|  Cytochrome c oxidase subunit 3 [O...  28.1    9.7  
gi|57281954|emb|CAD19464.1|  cytochrome oxidase subunit 3 [Colchi  28.1    9.7  
gi|115461833|ref|NP_001054516.1|  Os05g0124700 [Oryza sativa (...  28.1    9.7   
gi|5531229|emb|CAB51026.1|  glutathione synthetase [Arabidopsis t  28.1    9.7  
gi|15236364|ref|NP_192278.1|  unknown protein [Arabidopsis tha...  28.1    9.7   
gi|74100175|gb|AAZ99338.1|  cytochrome c oxidase subunit 3 [Or...  28.1    9.7  
gi|5531231|emb|CAB51027.1|  glutathione synthetase [Arabidopsis t  28.1    9.7   
gi|89280753|ref|YP_514631.1|  cytochrome c oxidase subunit 3 [...  28.1    9.7   
gi|77551472|gb|ABA94269.1|  expressed protein [Oryza sativa (japo  28.1    9.7  
gi|68566344|gb|AAY99387.1|  cytochrome oxidase subunit 3 [Andr...  28.1    9.7  
gi|68566342|gb|AAY99386.1|  cytochrome oxidase subunit 3 [Androcy  28.1    9.7  
gi|22326749|ref|NP_196783.2|  unknown protein [Arabidopsis thalia  28.1    9.7   
gi|76780588|emb|CAD92024.1|  cytochrome oxidase subunit 3 [Burcha  28.1    9.7  
gi|38345307|emb|CAE02760.2|  OSJNBb0085F13.7 [Oryza sativa (ja...  28.1    9.7   
gi|81176513|ref|YP_398397.1|  cox3 [Triticum aestivum] >gi|136...  28.1    9.7   
gi|94502578|ref|YP_588406.1|  cytochrome c oxidase subunit 3 [...  28.1    9.7   
gi|416824|sp|P32808|COX3_HELAN  Cytochrome c oxidase subunit 3...  28.1    9.7  
gi|416826|sp|Q03227|COX3_VICFA  Cytochrome c oxidase subunit 3...  28.1    9.7  
gi|1169061|sp|P09138|COX3_MAIZE  Cytochrome c oxidase subunit ...  28.1    9.7  
gi|9759389|dbj|BAB10040.1|  unnamed protein product [Arabidopsis   28.1    9.7  
gi|3121891|sp|Q36952|COX3_AEGCO  Cytochrome c oxidase subunit ...  28.1    9.7

Alignments

 

>gi|57282269|emb|CAD32363.1|  cytochrome oxidase subunit 3 [Campynema lineare]
Length=265

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
 Frame = +2

Query  50   ATTVDLTGALPPRGI------DLPPENHPLKHYSLVAGHDSTWMYHA  172
            A TV++ G  PP+GI      ++P  N P+ H S   G   TW +HA
Sbjct  110  APTVEIGGIWPPKGIGVLDPREIPFLNTPILHSS---GAAVTWAHHA  153


>gi|14193|emb|CAA37719.1|  cytochrome-c oxidase subunit III [Physcomitrella patens]
Length=205

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query  53   TTVDLTGALPPRGID-LPPENHPLKH--YSLVAGHDSTWMYHAFWMCFNE  193
            TTV++    PP+GID L P   P  +    L +G   TW +HA    F +
Sbjct  111  TTVEIGAIWPPKGIDVLNPSEFPFLNTLILLSSGAAVTWAHHAILAGFKK  160


>gi|115488266|ref|NP_001066620.1|  Os12g0299500 [Oryza sativa (japonica cultivar-group)]
 gi|113649127|dbj|BAF29639.1|  Os12g0299500 [Oryza sativa (japonica cultivar-group)]
Length=177

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 0/21 (0%)
 Frame = +2

Query  26  QSSGGRPCATTVDLTGALPPR  88
           +S GGR  ATTVD TG+ P R
Sbjct  6   RSGGGREAATTVDTTGSGPSR  26


>gi|49147192|ref|YP_025785.1|  cytochrome c oxidase subunit 3 [Pseudendoclonium akinetum]
 gi|33439207|gb|AAQ18744.1|  cytochrome c oxidase subunit 3 [Pseudendoclonium akinetum]
Length=261

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query  35   GGRPCATTVDLTGALPPRGID-LPPENHPLKH--YSLVAGHDSTWMYHA  172
            G    A T++L G  PPRGI+ L P   P  +    L +G   TW ++A
Sbjct  102  GHSSLAPTIELAGVWPPRGIEALDPFGIPFLNTLILLSSGASVTWAHYA  150


>gi|76780580|emb|CAD92020.1|  cytochrome oxidase subunit 3 [Chamaescilla sp. MWC2208]
Length=265

 Score = 28.9 bits (63),  Expect = 5.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGI-DLPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   P  +  ++  +G   TW YHA
Sbjct  110  APTVEIGGIWPPKGILVLDPRKIPFLNTPILPSSGAAVTWAYHA  153


>gi|32483247|emb|CAE02548.1|  OSJNBb0069N01.14 [Oryza sativa (japonica cultivar-group)]
Length=722

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +2

Query  23   RQSSGGRPCATTVDLTGALPPRGIDLPPENHPLKHYSLVAGHDSTWMYHAFW  178
            R S  G P   +    GA  PR   +     P  HY  VAG    W +H  W
Sbjct  20   RASDSGSPSTASSRELGAGDPRQAMVGRRRQPGHHYPAVAG--CGWPFHRHW  69


>gi|115448549|ref|NP_001048054.1|  Os02g0736500 [Oryza sativa (japonica cultivar-group)]
 gi|46390440|dbj|BAD15902.1|  putative nicastrin [Oryza sativa (japonica cultivar-group)]
 gi|113537585|dbj|BAF09968.1|  Os02g0736500 [Oryza sativa (japonica cultivar-group)]
Length=671

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 0/24 (0%)
 Frame = -2

Query  201  TLNSLKHIQKAWYIHVESWPATRL  130
            TL S+  + KA YI+VES+P  RL
Sbjct  31   TLESVPDLVKAMYINVESFPCVRL  54


>gi|115477875|ref|NP_001062533.1|  Os08g0564800 [Oryza sativa (japonica cultivar-group)]
 gi|42409072|dbj|BAD10323.1|  putative CTV.22 [Oryza sativa (japonica cultivar-group)]
 gi|45735914|dbj|BAD12946.1|  putative CTV.22 [Oryza sativa (japonica cultivar-group)]
 gi|113624502|dbj|BAF24447.1|  Os08g0564800 [Oryza sativa (japonica cultivar-group)]
Length=1320

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +1

Query  58   GGSHWRPSSSWD*LAAG----KSPAKTLQSGSW  144
            GG +WRP+   D  A+G     +PA  L  G W
Sbjct  5    GGGNWRPTQGADPAASGGIDPNAPAPALAGGDW  37


>gi|116310893|emb|CAH67833.1|  B0616E02-H0507E05.9 [Oryza sativa (indica cultivar-group)]
Length=615

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 0/37 (0%)
 Frame = +3

Query  153  PHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTD  263
            P  C  P GC   ++R+ KP P   + A  S   +TD
Sbjct  383  PAKCKRPDGCERFATRIKKPAPPPILPAQPSPTSSTD  419


>gi|60498734|dbj|BAC19853.2|  Cytochrome c oxidase subunit 3 [Oryza sativa (japonica cultivar-group)]
Length=280

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  125  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  168


>gi|57281954|emb|CAD19464.1|  cytochrome oxidase subunit 3 [Colchicum persicum]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   P  +  ++  +G   TW +HA
Sbjct  110  APTVEIGGIWPPKGISVLDPRKIPFLNTPILPSSGAAVTWAHHA  153


>gi|115461833|ref|NP_001054516.1|  Os05g0124700 [Oryza sativa (japonica cultivar-group)]
 gi|47900449|gb|AAT39225.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113578067|dbj|BAF16430.1|  Os05g0124700 [Oryza sativa (japonica cultivar-group)]
Length=437

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query  25   TIQWRKALRNDGGSHWRPSSSWD*L---AAGKSPAKTLQSGS  141
            T ++RK  +ND   HW+ S  +  L   + G S AKT+Q GS
Sbjct  102  TRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTAKTVQKGS  143


>gi|5531229|emb|CAB51026.1|  glutathione synthetase [Arabidopsis thaliana]
Length=539

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query  168  MPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRIRSSWMLDQ  302
            M SGC+S+S   S    CS+   SIS  P++ + L++  S  L Q
Sbjct  1    MGSGCSSLS--YSSSSTCSATVFSISSPPSSSSSLKLNPSSFLFQ  43


>gi|15236364|ref|NP_192278.1|  unknown protein [Arabidopsis thaliana]
 gi|4263056|gb|AAD15325.1|  hypothetical protein [Arabidopsis thaliana]
 gi|7270692|emb|CAB77854.1|  hypothetical protein [Arabidopsis thaliana]
Length=570

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query  176  RRHGTSMWNHGQLPDCNVLAGDFPAASQSHEEEGRQ*DPPSLRRAFLHWI  27
            +RHGT +W +  LP      GD PA +Q   +E R  +  SL+    +W+
Sbjct  201  KRHGTDLWRYKMLPQLE--PGDEPAFNQLILDE-RNYNCESLKTKHDNWL  247


>gi|74100175|gb|AAZ99338.1|  cytochrome c oxidase subunit 3 [Oryza sativa (japonica cultivar-group)]
 gi|74100229|gb|AAZ99391.1|  cytochrome c oxidase subunit 3 [Oryza sativa (japonica cultivar-group)]
Length=280

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  125  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  168


>gi|5531231|emb|CAB51027.1|  glutathione synthetase [Arabidopsis thaliana]
Length=539

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query  168  MPSGCASMSSRLSKPMPCSSVFASISRLPTTDALLRIRSSWMLDQ  302
            M SGC+S+S   S    CS+   SIS  P++ + L++  S  L Q
Sbjct  1    MGSGCSSLS--YSSSSTCSATVFSISSPPSSSSSLKLNPSSFLFQ  43


>gi|89280753|ref|YP_514631.1|  cytochrome c oxidase subunit 3 [Oryza sativa (indica cultivar-group)]
 gi|74100120|gb|AAZ99284.1|  cytochrome c oxidase subunit 3 [Oryza sativa (indica cultivar-group)]
Length=280

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  125  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  168


>gi|77551472|gb|ABA94269.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
Length=1193

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query  25   TIQWRKALRNDGGSHWRPSSSWD*L---AAGKSPAKTLQSGS  141
            T ++RK  +ND   HW+ S  +  L   + G S AKT+Q GS
Sbjct  539  TRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTAKTVQKGS  580


>gi|68566344|gb|AAY99387.1|  cytochrome oxidase subunit 3 [Androcymbium melanthioides]
 gi|68566346|gb|AAY99388.1|  cytochrome oxidase subunit 3 [Androcymbium dregei]
Length=183

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   P  +  ++  +G   TW +HA
Sbjct  62   APTVEIGGIWPPKGISVLDPREIPFLNTPILPSSGAAVTWAHHA  105


>gi|68566342|gb|AAY99386.1|  cytochrome oxidase subunit 3 [Androcymbium gramineum]
Length=181

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   P  +  ++  +G   TW +HA
Sbjct  62   APTVEIGGIWPPKGISVLDPREIPFLNTPILPSSGAAVTWAHHA  105


>gi|22326749|ref|NP_196783.2|  unknown protein [Arabidopsis thaliana]
Length=611

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query  1    KRLSFIR*TIQWRKALRNDG-GSHWRPSSSWD*LAAGKSPAKTLQSGSWP  147
            KRL F++  +  +K +  D  G+ WR + +W     G  P     SG  P
Sbjct  446  KRLEFVKLQLSKKKGIDTDKTGNRWRKAKTWSPCPIGMLPRIIGSSGRLP  495


>gi|76780588|emb|CAD92024.1|  cytochrome oxidase subunit 3 [Burchardia rosea]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   P  +  ++  +G   TW +HA
Sbjct  110  APTVEIGGIWPPKGISVLDPREIPFLNTPILPSSGAAVTWAHHA  153


>gi|38345307|emb|CAE02760.2|  OSJNBb0085F13.7 [Oryza sativa (japonica cultivar-group)]
 gi|38346878|emb|CAE04614.2|  OSJNBb0004G23.12 [Oryza sativa (japonica cultivar-group)]
Length=615

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 0/37 (0%)
 Frame = +3

Query  153  PHGCTMPSGCASMSSRLSKPMPCSSVFASISRLPTTD  263
            P  C  P GC   ++R+ KP P   + A  S   +TD
Sbjct  383  PAKCKRPDGCERFATRIKKPAPPPILPAQPSPTSSTD  419


>gi|81176513|ref|YP_398397.1|  cox3 [Triticum aestivum]
 gi|13698|emb|CAA34071.1|  unnamed protein product [Triticum aestivum]
 gi|78675237|dbj|BAE47662.1|  cox3 [Triticum aestivum]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  110  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  153


>gi|94502578|ref|YP_588406.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. mays]
 gi|114151570|ref|YP_740377.1|  cytochrome c oxidase subunit 3 [Zea perennis]
 gi|114151602|ref|YP_740446.1|  cytochrome c oxidase subunit 3 [Zea luxurians]
 gi|114151636|ref|YP_740413.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. parviglumis]
 gi|115278538|ref|YP_762331.1|  cytochrome c oxidase subunit 3 [Sorghum bicolor]
 gi|115278608|ref|YP_762504.1|  cytochrome c oxidase subunit 3 [Tripsacum dactyloides]
 gi|117070|sp|P14852|COX3_ORYSA  Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide 
III)
 gi|100867|pir||S20801  cytochrome-c oxidase (EC 1.9.3.1) chain III - maize mitochondrion
 gi|13217|emb|CAA34898.1|  unnamed protein product [Oryza sativa (indica cultivar-group)]
 gi|14296|emb|CAA37222.1|  cytochrome oxidase subunit 3 [Zea mays]
 gi|804815|gb|AAA66048.1|  cytochrome oxidase subunit III [Oryza sativa subsp. indica]
 gi|40795017|gb|AAR91061.1|  cytochrome c oxidase subunit 3 [Zea mays]
 gi|93116046|gb|ABE98679.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. mays]
 gi|93116090|gb|ABE98722.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. mays]
 gi|93116135|gb|ABE98766.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. mays]
 gi|102567904|gb|ABF70821.1|  cytochrome c oxidase subunit 3 [Zea perennis]
 gi|102567969|gb|ABF70853.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. parviglumis]
 gi|102579639|gb|ABF70919.1|  cytochrome c oxidase subunit 3 [Zea mays subsp. mays]
 gi|110287598|gb|ABG65644.1|  cytochrome c oxidase subunit 3 [Zea luxurians]
 gi|114309659|gb|ABI60876.1|  cytochrome c oxidase subunit 3 [Sorghum bicolor]
 gi|114432099|gb|ABI74648.1|  cytochrome c oxidase subunit 3 [Tripsacum dactyloides]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  110  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  153


>gi|416824|sp|P32808|COX3_HELAN  Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide 
III)
 gi|443843|emb|CAA40865.1|  cytochrome-c oxidase [Helianthus annuus]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
 Frame = +2

Query  26   QSSGGRPCATTVDLTGALPPRGI------DLPPENHPLKHYSLVAGHDSTWMYHA  172
            ++S     A TV++ G  PP+GI      ++P  N P+    L +G   TW +HA
Sbjct  102  RASSHSSLAPTVEIGGIWPPKGIAVLDPREIPFLNTPI---PLSSGAAVTWAHHA  153


>gi|416826|sp|Q03227|COX3_VICFA  Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide 
III)
 gi|14121|emb|CAA35988.1|  cytochrome c oxidase [Vicia faba]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query  26   QSSGGRPCATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            ++S     A TV++ G  PP+GI  L P   P  +  ++  +G   TW +HA
Sbjct  102  RASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHA  153


>gi|1169061|sp|P09138|COX3_MAIZE  Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide 
III)
 gi|13912|emb|CAA31221.1|  unnamed protein product [Zea mays]
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  110  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  153


>gi|9759389|dbj|BAB10040.1|  unnamed protein product [Arabidopsis thaliana]
Length=626

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query  1    KRLSFIR*TIQWRKALRNDG-GSHWRPSSSWD*LAAGKSPAKTLQSGSWP  147
            KRL F++  +  +K +  D  G+ WR + +W     G  P     SG  P
Sbjct  461  KRLEFVKLQLSKKKGIDTDKTGNRWRKAKTWSPCPIGMLPRIIGSSGRLP  510


>gi|3121891|sp|Q36952|COX3_AEGCO  Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide 
III)
 gi|1213424|gb|AAA91210.1|  cytochrome c oxidase subunit III
 gi|1213426|gb|AAA91211.1|  cytochrome c oxidase subunit III
Length=265

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query  50   ATTVDLTGALPPRGID-LPPENHPLKHYSLV--AGHDSTWMYHA  172
            A TV++ G  PP+GI  L P   PL +  ++  +G   TW +HA
Sbjct  110  APTVEIGGIWPPKGIGVLDPWEIPLLNTPILPSSGAAVTWAHHA  153

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 265
Number of extensions: 10
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 304
Length of database: 101054579
Length adjustment: 70
Effective length of query: 234
Effective length of database: 81220149
Effective search space: 2517824619
Effective search space used: 2517824619
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)