RID=1169024648-3764-17929872725.BLASTQ1, Contig428

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169024648-3764-17929872725.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig428
Length=443

Distribution of 19 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115434266|ref|NP_001041891.1|  Os01g0125600 [Oryza sativa (...  35.0    0.10  
gi|52075640|dbj|BAD44810.1|  hypothetical protein [Oryza sativa (  31.2    1.5  
gi|77554958|gb|ABA97754.1|  retrotransposon protein, putative,...  30.8    1.9  
gi|871770|emb|CAA61200.1|  glycin-rich protein [Vigna unguiculata  30.0    3.3  
gi|25446689|gb|AAN74836.1|  Putative maize transposon MuDR mud...  29.3    5.6   
gi|24417500|gb|AAN60360.1|  unknown [Arabidopsis thaliana]         28.9    7.3   
gi|48716639|dbj|BAD23307.1|  hypothetical protein [Oryza sativ...  28.9    7.3   
gi|15239505|ref|NP_200911.1|  RNA binding / nucleic acid bindi...  28.9    7.3   
gi|9759418|dbj|BAB09905.1|  unnamed protein product [Arabidopsis   28.5    9.6  
gi|115452843|ref|NP_001050022.1|  Os03g0333200 [Oryza sativa (...  28.5    9.6   
gi|115452621|ref|NP_001049911.1|  Os03g0309300 [Oryza sativa (...  28.5    9.6   
gi|30017239|gb|AAP12853.1|  At5g49350 [Arabidopsis thaliana]       28.5    9.6   
gi|2244786|emb|CAB10209.1|  ribonucleoprotein like protein [Ar...  28.5    9.6  
gi|22328624|ref|NP_193166.2|  RNA binding / nucleic acid bindi...  28.5    9.6   
gi|51535034|dbj|BAD37405.1|  hypothetical protein [Oryza sativa (  28.5    9.6  
gi|115472323|ref|NP_001059760.1|  Os07g0511100 [Oryza sativa (...  28.5    9.6   
gi|13122418|dbj|BAB32899.1|  putative glycine-rich protein [Or...  28.5    9.6   
gi|121627|sp|P09789|GRP1_PETHY  Glycine-rich cell wall structu...  28.5    9.6

Alignments

 

>gi|115434266|ref|NP_001041891.1|  Os01g0125600 [Oryza sativa (japonica cultivar-group)]
 gi|12328526|dbj|BAB21184.1|  P0044F08.14 [Oryza sativa (japonica cultivar-group)]
 gi|14090380|dbj|BAB55538.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113531422|dbj|BAF03805.1|  Os01g0125600 [Oryza sativa (japonica cultivar-group)]
Length=420

 Score = 35.0 bits (79),  Expect = 0.10
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query  250  HAMQQQPQMMYHRSPVIppstgyyynygpppysypeapsyNADHSAATHMFSDDNTSSSC  429
            H  QQQPQMMYHRSP I P T YY  Y    +         ++    T MFSD+NT   C
Sbjct  360  HQPQQQPQMMYHRSPQISPYTAYYNPYSYYYHPGAAGYHPASNGDVET-MFSDENT-KGC  417

Query  430  SIM  438
             +M
Sbjct  418  VVM  420


>gi|52075640|dbj|BAD44810.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=217

 Score = 31.2 bits (69),  Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 0/27 (0%)
 Frame = -1

Query  89   PPTALGLPPNAAASATLAPFP*KPERP  9
            PP   G+PP AA + T AP   +P+RP
Sbjct  105  PPPGGGVPPQAATARTAAPLLVRPQRP  131


>gi|77554958|gb|ABA97754.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=513

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 0/50 (0%)
 Frame = +1

Query  34   GANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTGQNPSSV  183
            GA     A LG N   V G Q   + G+QG  +   Q GG+    N + V
Sbjct  136  GATDGSLANLGDNSQGVHGVQGDGSQGIQGDGSRGVQGGGFNQDGNVAQV  185


>gi|871770|emb|CAA61200.1|  glycin-rich protein [Vigna unguiculata]
Length=408

 Score = 30.0 bits (66),  Expect = 3.3
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 0/55 (0%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTG  165
            G  G  G  G G+        GG   A GGF   +  G+ G +   F  GG + G
Sbjct  5    GGGGAGGGFGGGSGGGFGGGAGGGGGAGGGFGGGAGGGVGGGAGGGFGKGGGIGG  59


>gi|25446689|gb|AAN74836.1|  Putative maize transposon MuDR mudrA-like protein [Oryza sativa 
(japonica cultivar-group)]
 gi|108705921|gb|ABF93716.1|  transposon protein, putative, Mutator sub-class [Oryza sativa 
(japonica cultivar-group)]
Length=884

 Score = 29.3 bits (64),  Expect = 5.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGG  153
            G RG    +G G    D A   G     GG     ++G+ G S+ +F  GG
Sbjct  29   GGRGNDNVYGGGGGGGDGAGYDGCGGIFGG----GDDGVYGGSSGVFGGGG  75


>gi|24417500|gb|AAN60360.1|  unknown [Arabidopsis thaliana]
Length=163

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 0/55 (0%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTG  165
            G  G  G  G+G  +      GG   A GG    +  GL G   A    GG + G
Sbjct  56   GGGGFGGGRGSGGGIGGGGGQGGGFGAGGGVGGGAGGGLGGGGGAGGGGGGGIGG  110


>gi|48716639|dbj|BAD23307.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|48716940|dbj|BAD23634.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=172

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query  4    TRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTGQNPS  177
            TRG SG HG G +VA AA+ GG     G +     NG  GS+A    + G   G + S
Sbjct  58   TRG-SG-HGRGRSVA-AASGGGKELRGGSWSTGDGNGSSGSAACELWSSGSGDGDSDS  112


>gi|15239505|ref|NP_200911.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|9759450|dbj|BAB10366.1|  unnamed protein product [Arabidopsis thaliana]
 gi|16974556|gb|AAL31194.1|  AT5g61030/maf19_30 [Arabidopsis thaliana]
 gi|21928059|gb|AAM78058.1|  AT5g61030/maf19_30 [Arabidopsis thaliana]
Length=309

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 0/52 (0%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGY  156
            G  G SG  G G +       GG   + GGF    N   +GSSA+    G Y
Sbjct  177  GGYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVGDY  228


>gi|9759418|dbj|BAB09905.1|  unnamed protein product [Arabidopsis thaliana]
Length=314

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAI--FQNGGYVTG  165
            G  G  G    G+    A  LGG    VGG       G  G       F  GG  TG
Sbjct  95   GVGGGGGLGAGGSGGGGAGGLGGGGTGVGGGGTGGGTGFNGGGTGFGPFGGGGLGTG  151


>gi|115452843|ref|NP_001050022.1|  Os03g0333200 [Oryza sativa (japonica cultivar-group)]
 gi|108707987|gb|ABF95782.1|  protein kinase family protein, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113548493|dbj|BAF11936.1|  Os03g0333200 [Oryza sativa (japonica cultivar-group)]
Length=893

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 0/19 (0%)
 Frame = -1

Query  314  PVLGGITGDL*YIIWGCCC  258
            P++GG+ G L  +  GCCC
Sbjct  451  PIIGGVIGGLVVLALGCCC  469


>gi|115452621|ref|NP_001049911.1|  Os03g0309300 [Oryza sativa (japonica cultivar-group)]
 gi|108707764|gb|ABF95559.1|  retrotransposon protein, putative, Ty3-gypsy subclass, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113548382|dbj|BAF11825.1|  Os03g0309300 [Oryza sativa (japonica cultivar-group)]
Length=590

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTG  165
            G  G  G  G GA       LGG     GG    +  GL G + A    GG+  G
Sbjct  394  GGAGAGGGLGGGAGTGGGGGLGGGAGGGGGLGGGAGGGLGGGAGA---GGGFGGG  445


>gi|30017239|gb|AAP12853.1|  At5g49350 [Arabidopsis thaliana]
Length=302

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAI--FQNGGYVTG  165
            G  G  G    G+    A  LGG    VGG       G  G       F  GG  TG
Sbjct  90   GVGGGGGLGAGGSGGGGAGGLGGGGTGVGGGGTGGGTGFNGGGTGFGPFGGGGLGTG  146


>gi|2244786|emb|CAB10209.1|  ribonucleoprotein like protein [Arabidopsis thaliana]
 gi|7268135|emb|CAB78472.1|  ribonucleoprotein like protein [Arabidopsis thaliana]
Length=406

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 0/38 (0%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNG  114
            G+ G    +GNG+N A   A GG   + GG+   +  G
Sbjct  235  GSSGYGAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAG  272


>gi|22328624|ref|NP_193166.2|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|18152698|emb|CAC83517.1|  ribonucleoprotein 1 [Arabidopsis thaliana]
 gi|110740752|dbj|BAE98475.1|  ribonucleoprotein like protein [Arabidopsis thaliana]
Length=411

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 0/38 (0%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNG  114
            G+ G    +GNG+N A   A GG   + GG+   +  G
Sbjct  240  GSSGYGAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAG  277


>gi|51535034|dbj|BAD37405.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=292

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
 Frame = -1

Query  89   PPTALGLPPNAAASATLAPFP*KPE  15
            PP +  LPP AAAS   AP P +PE
Sbjct  220  PPPSRRLPPQAAASPRDAPPPRRPE  244


>gi|115472323|ref|NP_001059760.1|  Os07g0511100 [Oryza sativa (japonica cultivar-group)]
 gi|34394662|dbj|BAC83969.1|  putative glycine-rich cell wall structural protein [Oryza sativa 
(japonica cultivar-group)]
 gi|50509485|dbj|BAD31166.1|  putative glycine-rich cell wall structural protein [Oryza sativa 
(japonica cultivar-group)]
 gi|113611296|dbj|BAF21674.1|  Os07g0511100 [Oryza sativa (japonica cultivar-group)]
Length=359

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
 Frame = +1

Query  1    GTRGLSGFHGNG----ANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTG  165
            G  GL G HG G    A V   A  GG     GGF     +GL G     F  GG   G
Sbjct  179  GGGGLGGGHGGGFGGGAGVGGGA--GGGVGGGGGFGGGGGSGLGGGQGGGFGAGGGAGG  235


 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
 Frame = +1

Query  1    GTRGLSGFHGNG----ANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTG  165
            G  GL G HG G    A V   A  GG     GGF      GL G   + F  G  V G
Sbjct  247  GGGGLGGGHGGGFGGGAGVGSGA--GGGVGGGGGFGGGGGGGLGGGHGSGFGGGAGVGG  303


>gi|13122418|dbj|BAB32899.1|  putative glycine-rich protein [Oryza sativa (japonica cultivar-group)]
 gi|13161451|dbj|BAB33021.1|  putative glycine-rich protein [Oryza sativa (japonica cultivar-group)]
Length=486

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query  10   GLSGFHGNGANVADAAALGGNP-NAVGGFQVQSNNGLQGSSAAIFQNGGYV  159
            GL G  G G  +  +  LGG      GGF      G+ G   A F +GG V
Sbjct  86   GLGGGGGGGGGLGGSGGLGGGGMGGSGGFGGGGGGGVGGGVGAGFGSGGGV  136


>gi|121627|sp|P09789|GRP1_PETHY  Glycine-rich cell wall structural protein 1 precursor
 gi|20553|emb|CAA27866.1|  unnamed protein product [Petunia x hybrida]
 gi|225181|prf||1210313A  Gly rich structural protein
Length=384

 Score = 28.5 bits (62),  Expect = 9.6
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +1

Query  1    GTRGLSGFHGNGANVADAAALGGNPNAVGGFQVQSNNGLQGSSAAIFQNGGYVTG  165
            G  G  G  G G  V   A  GG     GGF      G+ G S      GG+  G
Sbjct  145  GGAGSGGGFGAGGGVGGGAGAGGGVGGGGGFGGGGGGGVGGGSG---HGGGFGAG  196

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 239
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 443
Length of database: 101065385
Length adjustment: 102
Effective length of query: 341
Effective length of database: 72158891
Effective search space: 3247150095
Effective search space used: 3247150095
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)