RID=1169025009-1888-72491833981.BLASTQ4, Contig439

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169025009-1888-72491833981.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig439
Length=524

Distribution of 20 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92885255|gb|ABE87742.1|  Ribosomal protein L27e; KOW [Medicago   216    3e-56
gi|15233637|ref|NP_193236.1|  structural constituent of riboso...   212    5e-55 
gi|498902|gb|AAA86950.1|  ribosomal protein L27 homolog             211    2e-54
gi|498906|gb|AAA86952.1|  ribosomal protein L27 homolog             209    4e-54
gi|464630|sp|Q05462|RL27_PEA  60S ribosomal protein L27 >gi|20...   209    5e-54
gi|15233318|ref|NP_188862.1|  structural constituent of riboso...   209    6e-54 
gi|21554529|gb|AAM63601.1|  ribosomal protein L27, putative [Arab   208    8e-54 
gi|498904|gb|AAA86951.1|  ribosomal protein L27 homolog             207    2e-53
gi|15225207|ref|NP_180781.1|  structural constituent of riboso...   201    2e-51 
gi|115445581|ref|NP_001046570.1|  Os02g0284600 [Oryza sativa (...   201    2e-51 
gi|8131701|dbj|BAA96367.1|  ribosomal protein L27 [Panax ginseng]   199    5e-51
gi|115483480|ref|NP_001065410.1|  Os10g0564300 [Oryza sativa (...   198    1e-50 
gi|730547|sp|P41101|RL27_SOLTU  60S ribosomal protein L27 >gi|...   183    4e-46
gi|50843988|gb|AAT84169.1|  60S ribosomal protein L27 [Chara glob   157    2e-38
gi|400991|sp|Q02984|RL27_PYRST  60S ribosomal protein L27 >gi|...   150    2e-36
gi|445615|prf||1909362A  ribosomal protein L27                      137    3e-32
gi|116057572|emb|CAL53775.1|  60S ribosomal protein L27 (ISS) [Os   121    2e-27
gi|498900|gb|AAA86949.1|  ribosomal protein L27 homolog            58.9    1e-08
gi|12322998|gb|AAG51488.1|AC069471_19  unknown protein [Arabidops  30.4    3.8  
gi|42562361|ref|NP_174117.2|  unknown protein [Arabidopsis tha...  30.4    3.8

Alignments

 

>gi|92885255|gb|ABE87742.1|  Ribosomal protein L27e; KOW [Medicago truncatula]
Length=135

 Score =  216 bits (551),  Expect = 3e-56
 Identities = 117/133 (87%), Positives = 126/133 (94%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKPNKAVIVLQGRYAG+KAVIVK+FDDGTRERAYGHCLVAG+KKYP+KVI+KDSAK
Sbjct  1    MVKFLKPNKAVIVLQGRYAGKKAVIVKNFDDGTRERAYGHCLVAGIKKYPAKVIKKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+VVT D LQ+KDKKV A K  K+RFEER
Sbjct  61   KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKEVVTTDVLQSKDKKVTALKEAKKRFEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|15233637|ref|NP_193236.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|3123264|sp|P51419|RL273_ARATH  60S ribosomal protein L27-3
 gi|2244857|emb|CAB10279.1|  ribosomal protein [Arabidopsis thaliana]
 gi|7268246|emb|CAB78542.1|  ribosomal protein [Arabidopsis thaliana]
 gi|17381062|gb|AAL36343.1|  putative ribosomal protein [Arabidopsis thaliana]
 gi|20466061|gb|AAM20365.1|  putative ribosomal protein [Arabidopsis thaliana]
 gi|21553620|gb|AAM62713.1|  ribosomal protein [Arabidopsis thaliana]
 gi|110736737|dbj|BAF00331.1|  ribosomal protein [Arabidopsis thaliana]
Length=135

 Score =  212 bits (540),  Expect = 5e-55
 Identities = 115/133 (86%), Positives = 124/133 (93%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLK NKAVI+LQGRYAG+KAVI+KSFDDG R+R YGHCLVAG+KKYPSKVIRKDSAK
Sbjct  1    MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLK+V T+DALQ+KDKKVAA K  K + EER
Sbjct  61   KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|498902|gb|AAA86950.1|  ribosomal protein L27 homolog
Length=135

 Score =  211 bits (536),  Expect = 2e-54
 Identities = 113/133 (84%), Positives = 122/133 (91%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKPNKAVI+LQGRYAG+KAVIVK+FDDGTRE+ YGHCLVAG+KKYPSKVI+KDSAK
Sbjct  1    MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKYPSKVIKKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVK F+KLVNYQHLMPTRYTLDVDLKD V  D LQ+KDKKV A K TK+  EER
Sbjct  61   KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|498906|gb|AAA86952.1|  ribosomal protein L27 homolog
Length=135

 Score =  209 bits (533),  Expect = 4e-54
 Identities = 112/133 (84%), Positives = 122/133 (91%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKPNKAVI+LQGRYAG+KAVIVK+FDDGTR++ YGHCLVAG+KKYPSKVI+KDSAK
Sbjct  1    MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTRDKPYGHCLVAGIKKYPSKVIKKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVK F+KLVNYQHLMPTRYTLDVDLKD V  D LQ+KDKKV A K TK+  EER
Sbjct  61   KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|464630|sp|Q05462|RL27_PEA  60S ribosomal protein L27
 gi|20768|emb|CAA50035.1|  ribosomal protein L27 [Pisum sativum]
Length=135

 Score =  209 bits (532),  Expect = 5e-54
 Identities = 112/133 (84%), Positives = 122/133 (91%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKPNKAVI+LQGRYAG+KAVIVK+FDDGTRE+ YGHCLVAG+KK+PSKVI+KDSAK
Sbjct  1    MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVK F+KLVNYQHLMPTRYTLDVDLKD V  D LQ+KDKKV A K TK+  EER
Sbjct  61   KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|15233318|ref|NP_188862.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|109893407|sp|Q8LCL3|RL272_ARATH  60S ribosomal protein L27-2
 gi|11994741|dbj|BAB03070.1|  60S ribosomal protein L27 [Arabidopsis thaliana]
 gi|17065082|gb|AAL32695.1|  60S ribosomal protein L27 [Arabidopsis thaliana]
 gi|17380772|gb|AAL36216.1|  putative ribosomal protein L27 [Arabidopsis thaliana]
 gi|20259601|gb|AAM14157.1|  putative ribosomal protein L27 [Arabidopsis thaliana]
 gi|20260082|gb|AAM13388.1|  60S ribosomal protein L27 [Arabidopsis thaliana]
 gi|22530966|gb|AAM96987.1|  putative ribosomal protein L27 [Arabidopsis thaliana]
 gi|23198420|gb|AAN15737.1|  putative ribosomal protein L27 [Arabidopsis thaliana]
Length=135

 Score =  209 bits (531),  Expect = 6e-54
 Identities = 113/133 (84%), Positives = 123/133 (92%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLK NKAVI+LQGRYAG+KAVI+KSFDDGT +R YGHCLVAG+KKYPSKVIRKDSAK
Sbjct  1    MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLK+V T+DAL++KDKKV A K  K + EER
Sbjct  61   KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|21554529|gb|AAM63601.1|  ribosomal protein L27, putative [Arabidopsis thaliana]
Length=135

 Score =  208 bits (530),  Expect = 8e-54
 Identities = 113/133 (84%), Positives = 123/133 (92%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLK NKAVI+LQGRYAG+KAVI+KSFDDGT +R YGHCLVAG+KKYPSKVIRKDSAK
Sbjct  1    MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLK+V T+DAL++KDKKV A K  K + EER
Sbjct  61   KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVIALKEAKAKLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|498904|gb|AAA86951.1|  ribosomal protein L27 homolog
Length=135

 Score =  207 bits (527),  Expect = 2e-53
 Identities = 112/133 (84%), Positives = 121/133 (90%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKPNKAVI+LQGRYAG+KAVIVK+FDDGTRE+ YGHCLVAG+KKY SKVI+KDSAK
Sbjct  1    MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKYSSKVIKKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVK F+KLVNYQHLMPTRYTLDVDLKD V  D LQ+KDKKV A K TK+  EER
Sbjct  61   KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSVEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|15225207|ref|NP_180781.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75313545|sp|Q9SKX8|RL271_ARATH  60S ribosomal protein L27-1
 gi|4263697|gb|AAD15383.1|  60S ribosomal protein L27 [Arabidopsis thaliana]
 gi|62867611|gb|AAY17409.1|  At2g32220 [Arabidopsis thaliana]
Length=135

 Score =  201 bits (510),  Expect = 2e-51
 Identities = 106/133 (79%), Positives = 120/133 (90%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVK +KP KAVI+LQGRY G+KAVIVKSFDDGT E+ YGHCLVAG+KKYPSKVIRKDSAK
Sbjct  1    MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVKCF K++NYQH+MPTRYTLD+DLK+VV+ DA+ +KDKKV A K  K +FEER
Sbjct  61   KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|115445581|ref|NP_001046570.1|  Os02g0284600 [Oryza sativa (japonica cultivar-group)]
 gi|47847708|dbj|BAD21487.1|  putative 60S ribosomal protein L27 [Oryza sativa (japonica cultivar-group)]
 gi|47848339|dbj|BAD22201.1|  putative 60S ribosomal protein L27 [Oryza sativa (japonica cultivar-group)]
 gi|113536101|dbj|BAF08484.1|  Os02g0284600 [Oryza sativa (japonica cultivar-group)]
Length=137

 Score =  201 bits (510),  Expect = 2e-51
 Identities = 102/135 (75%), Positives = 113/135 (83%), Gaps = 2/135 (1%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKP KAVI+LQGRYAGRKAVIV+ F++GTR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct  1    MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRY--tldvdlkdvvtvdALQTKDKKVAACKATKERFE  398
            KTAKKSRVKCF+KLVN+ H+MPTRY   +D         DAL T+DKKVAACKA K R E
Sbjct  61   KTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLE  120

Query  399  ERFKTGKNRWFFTKL  443
            ERFKTGKNRWFFTKL
Sbjct  121  ERFKTGKNRWFFTKL  135


>gi|8131701|dbj|BAA96367.1|  ribosomal protein L27 [Panax ginseng]
Length=135

 Score =  199 bits (506),  Expect = 5e-51
 Identities = 111/133 (83%), Positives = 119/133 (89%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVK LKPNKAVIVL GRYAGRK+VI+KSFD+GTR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct  1    MVKVLKPNKAVIVLNGRYAGRKSVIIKSFDEGTRDRPYGHCLVAGISKYPKKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            KTAKKSRVK FIKLVN  H+MPTRYTLDVDLKDVVTVD LQ++DKKV A K TK R EER
Sbjct  61   KTAKKSRVKAFIKLVNCNHIMPTRYTLDVDLKDVVTVDCLQSRDKKVTAAKETKARLEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  121  FKTGKNRWFFTKL  133


>gi|115483480|ref|NP_001065410.1|  Os10g0564300 [Oryza sativa (japonica cultivar-group)]
 gi|12597895|gb|AAG60203.1|AC084763_23  putative ribosomal protein L27 [Oryza sativa]
 gi|31433546|gb|AAP55044.1|  60S ribosomal protein L27, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113639942|dbj|BAF27247.1|  Os10g0564300 [Oryza sativa (japonica cultivar-group)]
Length=136

 Score =  198 bits (503),  Expect = 1e-50
 Identities = 99/134 (73%), Positives = 112/134 (83%), Gaps = 1/134 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLKP KAVI+LQGR+AGRKAVIV+ F++GTR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct  1    MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRY-tldvdlkdvvtvdALQTKDKKVAACKATKERFEE  401
            KTAKKSRVKCF+KLVN+ HLMPTRY       +     DAL T+DKKVAACK+ K R E+
Sbjct  61   KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED  120

Query  402  RFKTGKNRWFFTKL  443
            RFKTGKNRWFFTKL
Sbjct  121  RFKTGKNRWFFTKL  134


>gi|730547|sp|P41101|RL27_SOLTU  60S ribosomal protein L27
 gi|6010292|emb|CAB57298.1|  60S ribosomal protein L27 [Solanum tuberosum]
Length=138

 Score =  183 bits (464),  Expect = 4e-46
 Identities = 99/137 (72%), Positives = 111/137 (81%), Gaps = 5/137 (3%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            M KFLKPNKAVI+LQG+YAGRKAVIV++FD+GTR+R YGHCLVAG+ +YP KVIRKDSAK
Sbjct  1    MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRY----tldvdlkdvvtvdALQTKDKKVAACKATKER  392
            K  KKSRVK FIKLVNY H+MPTRY     L   +KDVV  D LQ +DKKV A + TK R
Sbjct  61   KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR  119

Query  393  FEERFKTGKNRWFFTKL  443
              ERFKTGKNRWFFTKL
Sbjct  120  LAERFKTGKNRWFFTKL  136


>gi|50843988|gb|AAT84169.1|  60S ribosomal protein L27 [Chara globularis]
Length=135

 Score =  157 bits (397),  Expect = 2e-38
 Identities = 85/133 (63%), Positives = 102/133 (76%), Gaps = 0/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLK NK V++L GRYAG KAVIVK+FD GT  R YGH LVAG+ KYP KV ++ S K
Sbjct  1    MVKFLKQNKVVVLLNGRYAGHKAVIVKNFDGGTGGRPYGHALVAGIAKYPRKVTKRLSEK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            K AK++R+K FIK++NY H+MPTRY LDVDLK  V  + L+T+ KKV   K  K+  EER
Sbjct  61   KLAKRARLKPFIKVINYNHIMPTRYALDVDLKTTVIPEKLETQAKKVETRKEVKKILEER  120

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFF+KL
Sbjct  121  FKTGKNRWFFSKL  133


>gi|400991|sp|Q02984|RL27_PYRST  60S ribosomal protein L27
 gi|18267|emb|CAA48289.1|  ribosomal protein L27 [Pyrobotrys stellata]
Length=134

 Score =  150 bits (380),  Expect = 2e-36
 Identities = 79/133 (59%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            MVKFLK  K V+VL GR+AG+KAVIV++FDDGT  R YGH LV G++K P KV ++ S K
Sbjct  1    MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdvvtvdALQTKDKKVAACKATKERFEER  404
            K AKKS +K FIK VNY HLMPTRY         V  +A +   KKV A K  K+  EE+
Sbjct  61   KQAKKSTLKTFIKTVNYNHLMPTRY-TLDVDFKGVAAEAQENPTKKVEARKECKKLLEEK  119

Query  405  FKTGKNRWFFTKL  443
            FKTGKNRWFFTKL
Sbjct  120  FKTGKNRWFFTKL  132


>gi|445615|prf||1909362A  ribosomal protein L27
Length=136

 Score =  137 bits (344),  Expect = 3e-32
 Identities = 73/134 (54%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
 Frame = +3

Query  45   MVKFLKPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAK  224
            M KF+KP K V+VL GRY+GRKAVIVK+ DDGT +R Y H LVAG+ +YP KV      K
Sbjct  1    MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK  60

Query  225  KTAKKSRVKCFIKLVNYQHLMPTRY-tldvdlkdvvtvdALQTKDKKVAACKATKERFEE  401
            K AK+S++K F+K+ NY HLMPTRY       K VV  D  +    K  A +  K +FEE
Sbjct  61   KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARRDAKVKFEE  120

Query  402  RFKTGKNRWFFTKL  443
            R+KTGKN+WFF KL
Sbjct  121  RYKTGKNKWFFQKL  134


>gi|116057572|emb|CAL53775.1|  60S ribosomal protein L27 (ISS) [Ostreococcus tauri]
Length=184

 Score =  121 bits (303),  Expect = 2e-27
 Identities = 79/159 (49%), Positives = 92/159 (57%), Gaps = 31/159 (19%)
 Frame = +3

Query  60   KPNKAVIVLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSK-------------  200
            +P K V+VL GRYAG+KAVIVK+ DDG     YGH LV G+   P K             
Sbjct  24   QPGKVVVVLAGRYAGKKAVIVKNVDDGNSAHPYGHALVCGLSTIPRKVRNDLHRCARTAP  83

Query  201  ------------------VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYtldvdlkdv  326
                              V +K   KK AK+S+ K FIK +NY HLMPTRYTLDV+ KDV
Sbjct  84   FGCTEILTARSVAFENAQVTKKMDEKKQAKRSKCKTFIKNINYSHLMPTRYTLDVNFKDV  143

Query  327  vtvdALQTKDKKVAACKATKERFEERFKTGKNRWFFTKL  443
            VT D L    KKVAA K  K+  EERFKTGK+RWFFT+L
Sbjct  144  VTSDVLDNATKKVAAQKEAKKLLEERFKTGKSRWFFTRL  182


>gi|498900|gb|AAA86949.1|  ribosomal protein L27 homolog
Length=49

 Score = 58.9 bits (141),  Expect = 1e-08
 Identities = 27/34 (79%), Positives = 29/34 (85%), Gaps = 0/34 (0%)
 Frame = +3

Query  342  LQTKDKKVAACKATKERFEERFKTGKNRWFFTKL  443
            LQ+KDKKV A K TK+  EERFKTGKNRWFFTKL
Sbjct  14   LQSKDKKVTALKETKKSVEERFKTGKNRWFFTKL  47


>gi|12322998|gb|AAG51488.1|AC069471_19  unknown protein [Arabidopsis thaliana]
Length=542

 Score = 30.4 bits (67),  Expect = 3.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query  84   LQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAKKTAKKSRVKCFIK  263
            L  ++   K  ++KS+ +    ++  HC+ A  K    K+   D+A + AKK  V C + 
Sbjct  326  LLSQFRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKL---DAAYREAKKKDVACPVF  382

Query  264  LV  269
            L+
Sbjct  383  LL  384


>gi|42562361|ref|NP_174117.2|  unknown protein [Arabidopsis thaliana]
 gi|63147394|gb|AAY34170.1|  At1g27960 [Arabidopsis thaliana]
Length=539

 Score = 30.4 bits (67),  Expect = 3.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query  84   LQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGVKKYPSKVIRKDSAKKTAKKSRVKCFIK  263
            L  ++   K  ++KS+ +    ++  HC+ A  K    K+   D+A + AKK  V C + 
Sbjct  323  LLSQFRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKL---DAAYREAKKKDVACPVF  379

Query  264  LV  269
            L+
Sbjct  380  LL  381

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 317
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 524
Length of database: 101065385
Length adjustment: 105
Effective length of query: 419
Effective length of database: 71308700
Effective search space: 4920300300
Effective search space used: 4920300300
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)