Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930482-24582-102000444710.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig44 Length=389
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|21592966|gb|AAM64915.1| ubiquitin-fusion protein, putative [A 100 2e-21 gi|15218145|ref|NP_177910.1| unknown protein [Arabidopsis tha... 100 2e-21 gi|9280680|gb|AAF86549.1|AC069252_8 F2E2.12 [Arabidopsis thalian 97.8 1e-20 gi|15219188|ref|NP_173624.1| unknown protein [Arabidopsis tha... 97.8 1e-20 gi|4097587|gb|AAD00119.1| NTGP5 [Nicotiana tabacum] 91.3 9e-19 gi|115448707|ref|NP_001048133.1| Os02g0750600 [Oryza sativa (... 89.0 5e-18 gi|9755801|emb|CAC01745.1| putative protein [Arabidopsis thalian 84.0 1e-16 gi|18417680|ref|NP_568315.1| unknown protein [Arabidopsis tha... 84.0 1e-16 gi|115453617|ref|NP_001050409.1| Os03g0426800 [Oryza sativa (... 82.4 4e-16 gi|22331362|ref|NP_189334.2| unknown protein [Arabidopsis tha... 80.5 2e-15 gi|108708927|gb|ABF96722.1| ubiquitin-fusion protein, putativ... 77.8 1e-14 gi|46015773|pdb|1SE9|A Chain A, Structure Of At3g01050, A Ubi... 75.9 4e-14 gi|15232032|ref|NP_186754.1| unknown protein [Arabidopsis tha... 75.9 4e-14 gi|115467174|ref|NP_001057186.1| Os06g0224100 [Oryza sativa (... 74.3 1e-13 gi|115458096|ref|NP_001052648.1| Os04g0393300 [Oryza sativa (... 68.9 5e-12 gi|4097567|gb|AAD00115.1| ATGP4 [Arabidopsis thaliana] 68.6 6e-12 gi|15234839|ref|NP_194229.1| ATGP4 [Arabidopsis thaliana] >gi... 68.6 6e-12 gi|115487288|ref|NP_001066131.1| Os12g0141900 [Oryza sativa (... 52.0 6e-07 gi|56412259|gb|AAV88623.1| nodulation receptor kinase [Sesbania 30.4 2.0 gi|11527539|dbj|BAB18668.1| maturase [Vallisneria asiatica] 30.4 2.0 gi|15226370|ref|NP_180393.1| ATCNGC15; calmodulin binding / c... 30.0 2.6 gi|115447411|ref|NP_001047485.1| Os02g0627700 [Oryza sativa (... 28.9 5.7 gi|115450691|ref|NP_001048946.1| Os03g0145000 [Oryza sativa (... 28.1 9.7 gi|51872725|gb|AAU12390.1| nodulation receptor kinase [Galega or 28.1 9.7 gi|51872707|gb|AAU12381.1| nodulation receptor kinase [Galega... 28.1 9.7 gi|21537267|gb|AAM61608.1| putative integral membrane protein [A 28.1 9.7 gi|27497207|gb|AAO17351.1| Hypothetical protein [Oryza sativa... 28.1 9.7 gi|15219524|ref|NP_177511.1| antiporter/ drug transporter/ tr... 28.1 9.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 286 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 389 Length of database: 101054579 Length adjustment: 95 Effective length of query: 294 Effective length of database: 74136424 Effective search space: 2520638416 Effective search space used: 2520638416 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)