Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169025189-18575-143726416671.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig444 Length=322
Score E Sequences producing significant alignments: (Bits) Value gi|92880690|gb|ABE85775.1| WD-40 repeat [Medicago truncatula] 166 3e-41 gi|18405485|ref|NP_564699.1| unknown protein [Arabidopsis tha... 158 6e-39 gi|8778499|gb|AAF79507.1|AC002328_15 F20N2.10 [Arabidopsis thali 158 6e-39 gi|18399975|ref|NP_566453.1| unknown protein [Arabidopsis tha... 152 3e-37 gi|9294540|dbj|BAB02803.1| WD domain protein-like [Arabidopsis t 152 3e-37 gi|115448363|ref|NP_001047961.1| Os02g0721600 [Oryza sativa (... 148 6e-36 gi|45735851|dbj|BAD12886.1| WD-40 repeat protein-like [Oryza ... 146 2e-35 gi|21536732|gb|AAM61064.1| WD-repeat protein-like [Arabidopsis t 145 3e-35 gi|30696707|ref|NP_851199.1| unknown protein [Arabidopsis tha... 145 4e-35 gi|18423837|ref|NP_568838.1| unknown protein [Arabidopsis thalia 145 4e-35 gi|9758639|dbj|BAB09301.1| WD-repeat protein-like [Arabidopsis t 145 4e-35 gi|27948448|gb|AAO25543.1| GAMYB-binding protein [Hordeum vulgar 140 2e-33 gi|115477088|ref|NP_001062140.1| Os08g0497600 [Oryza sativa (... 138 7e-33 gi|115466678|ref|NP_001056938.1| Os06g0171900 [Oryza sativa (... 137 1e-32 gi|86438777|emb|CAJ75637.1| gibberellin MYB transcription factor 131 6e-31 gi|108708515|gb|ABF96310.1| WD-40 repeat family protein, puta... 125 6e-29 gi|115453307|ref|NP_001050254.1| Os03g0386000 [Oryza sativa (... 125 6e-29 gi|50881464|gb|AAT85309.1| WD domain, G-beta repeat containin... 125 6e-29 gi|115476362|ref|NP_001061777.1| Os08g0408200 [Oryza sativa (... 112 3e-25 gi|12324715|gb|AAG52318.1|AC021666_7 unknown protein; 4584-7806 102 3e-22 gi|18400003|ref|NP_564469.1| unknown protein [Arabidopsis tha... 102 3e-22 gi|21553502|gb|AAM62595.1| unknown [Arabidopsis thaliana] 101 9e-22 gi|13937195|gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Ara... 99.8 3e-21 gi|42572153|ref|NP_974167.1| unknown protein [Arabidopsis thalia 98.2 7e-21 gi|6598592|gb|AAF18647.1|AC006228_18 F5J5.6 [Arabidopsis thalian 76.3 3e-14 gi|6573770|gb|AAF17690.1|AC009243_17 F28K19.28 [Arabidopsis thal 66.2 3e-11 gi|62320749|dbj|BAD95417.1| hypothetical protein [Arabidopsis th 59.7 3e-09 gi|116057161|emb|CAL51588.1| GTP-binding protein SEC4, small ... 30.4 1.9 gi|34481815|emb|CAD44258.1| putative sucrose-phosphate synthase 29.6 3.3 gi|6850839|emb|CAB71078.1| putative protein [Arabidopsis thalian 28.9 5.6 gi|6691198|gb|AAF24536.1|AC007534_17 F7F22.3 [Arabidopsis thalia 28.9 5.6 gi|42573499|ref|NP_974846.1| unknown protein [Arabidopsis thalia 28.9 5.6 gi|42568114|ref|NP_568507.2| unknown protein [Arabidopsis thalia 28.9 5.6 gi|30695425|ref|NP_191707.2| unknown protein [Arabidopsis thalia 28.9 5.6 gi|74273635|gb|ABA01485.1| nitrilase-like protein NIT [Gossypium 28.1 9.5
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 266 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 322 Length of database: 101065385 Length adjustment: 76 Effective length of query: 246 Effective length of database: 79527213 Effective search space: 2465343603 Effective search space used: 2465343603 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)