Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168931114-25212-126122190793.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig57 Length=538
Score E Sequences producing significant alignments: (Bits) Value gi|62320749|dbj|BAD95417.1| hypothetical protein [Arabidopsis th 277 1e-74 gi|13937195|gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Ara... 277 1e-74 gi|18400003|ref|NP_564469.1| unknown protein [Arabidopsis tha... 260 2e-69 gi|108708515|gb|ABF96310.1| WD-40 repeat family protein, puta... 256 5e-68 gi|50881464|gb|AAT85309.1| WD domain, G-beta repeat containin... 256 5e-68 gi|21553502|gb|AAM62595.1| unknown [Arabidopsis thaliana] 256 5e-68 gi|12324715|gb|AAG52318.1|AC021666_7 unknown protein; 4584-7806 250 2e-66 gi|42572153|ref|NP_974167.1| unknown protein [Arabidopsis thalia 249 6e-66 gi|30696707|ref|NP_851199.1| unknown protein [Arabidopsis tha... 227 2e-59 gi|18423837|ref|NP_568838.1| unknown protein [Arabidopsis thalia 227 2e-59 gi|21536732|gb|AAM61064.1| WD-repeat protein-like [Arabidopsis t 226 4e-59 gi|6598592|gb|AAF18647.1|AC006228_18 F5J5.6 [Arabidopsis thalian 226 5e-59 gi|18399975|ref|NP_566453.1| unknown protein [Arabidopsis tha... 220 3e-57 gi|9758639|dbj|BAB09301.1| WD-repeat protein-like [Arabidopsis t 219 4e-57 gi|6573770|gb|AAF17690.1|AC009243_17 F28K19.28 [Arabidopsis thal 216 4e-56 gi|18405485|ref|NP_564699.1| unknown protein [Arabidopsis tha... 215 9e-56 gi|115448363|ref|NP_001047961.1| Os02g0721600 [Oryza sativa (... 214 1e-55 gi|27948448|gb|AAO25543.1| GAMYB-binding protein [Hordeum vulgar 211 2e-54 gi|92880690|gb|ABE85775.1| WD-40 repeat [Medicago truncatula] 208 8e-54 gi|115466678|ref|NP_001056938.1| Os06g0171900 [Oryza sativa (... 208 1e-53 gi|115476362|ref|NP_001061777.1| Os08g0408200 [Oryza sativa (... 199 5e-51 gi|18411805|ref|NP_565168.1| unknown protein [Arabidopsis thalia 197 1e-50 gi|115477088|ref|NP_001062140.1| Os08g0497600 [Oryza sativa (... 194 2e-49 gi|86438777|emb|CAJ75637.1| gibberellin MYB transcription factor 191 2e-48 gi|115453307|ref|NP_001050254.1| Os03g0386000 [Oryza sativa (... 184 2e-46 gi|60418876|gb|AAX19865.1| unknown [Doryanthes excelsa] 175 8e-44 gi|9294540|dbj|BAB02803.1| WD domain protein-like [Arabidopsis t 172 7e-43 gi|8778499|gb|AAF79507.1|AC002328_15 F20N2.10 [Arabidopsis thali 148 1e-35 gi|45735851|dbj|BAD12886.1| WD-40 repeat protein-like [Oryza ... 52.0 1e-06 gi|115444267|ref|NP_001045913.1| Os02g0151900 [Oryza sativa (... 35.0 0.16 gi|31432016|gb|AAP53708.1| hypothetical protein LOC_Os10g2685... 35.0 0.16 gi|53791995|dbj|BAD54580.1| putative PHG1A protein [Oryza sat... 31.6 1.8 gi|15231359|ref|NP_187991.1| transporter [Arabidopsis thalian... 30.4 4.0 gi|47497244|dbj|BAD19288.1| putative lysine-ketoglutarate red... 29.6 6.9 gi|115480625|ref|NP_001063906.1| Os09g0557800 [Oryza sativa (... 29.3 9.0 gi|67866962|gb|AAY82457.1| 9-cis-epoxycarotenoid dioxygenase 2 [ 29.3 9.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 291 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 538 Length of database: 101054579 Length adjustment: 106 Effective length of query: 432 Effective length of database: 71019585 Effective search space: 5184429705 Effective search space used: 5184429705 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)