Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928796-27043-45071418963.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig6 Length=780
Score E Sequences producing significant alignments: (Bits) Value gi|21592404|gb|AAM64355.1| unknown [Arabidopsis thaliana] 212 1e-54 gi|18405560|ref|NP_565947.1| nucleic acid binding [Arabidopsi... 210 4e-54 gi|15228989|ref|NP_191227.1| nucleic acid binding [Arabidopsi... 209 1e-53 gi|18398995|ref|NP_566381.1| nucleic acid binding [Arabidopsi... 204 3e-52 gi|30681485|ref|NP_850556.1| nucleic acid binding [Arabidopsis t 204 3e-52 gi|21592735|gb|AAM64684.1| unknown [Arabidopsis thaliana] 203 5e-52 gi|18414788|ref|NP_568149.1| nucleic acid binding [Arabidopsi... 196 8e-50 gi|10178049|dbj|BAB11532.1| unnamed protein product [Arabidopsis 196 8e-50 gi|115463877|ref|NP_001055538.1| Os05g0411600 [Oryza sativa (... 173 8e-43 gi|92871442|gb|ABE80430.1| Single-stranded nucleic acid binding 153 6e-37 gi|72536048|gb|AAZ73119.1| DIP1 [Zea mays] 151 3e-36 gi|92871440|gb|ABE80428.1| Single-stranded nucleic acid binding 145 2e-34 gi|52077166|dbj|BAD46211.1| unknown protein [Oryza sativa (japon 134 3e-31 gi|115433958|ref|NP_001041737.1| Os01g0100600 [Oryza sativa (... 38.9 0.023 gi|50878486|gb|AAT85259.1| unknown protein [Oryza sativa (japoni 38.1 0.039 gi|115488986|ref|NP_001066980.1| Os12g0552200 [Oryza sativa (... 32.7 1.6 gi|77556727|gb|ABA99523.1| Patatin-like phospholipase family ... 32.7 1.6 gi|77552323|gb|ABA95120.1| hypothetical protein LOC_Os11g4281... 31.2 4.7 gi|92874926|gb|ABE83112.1| Peptidase aspartic, catalytic; UBA-li 30.8 6.2 gi|116060922|emb|CAL57400.1| Junctional membrane complex prot... 30.4 8.0 gi|22795285|gb|AAN08257.1| hypothetical protein [Oryza sativa... 30.4 8.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 385 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 780 Length of database: 101054579 Length adjustment: 111 Effective length of query: 669 Effective length of database: 69602840 Effective search space: 10370823160 Effective search space used: 10370823160 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 66 (30.0 bits)