Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168931152-7968-84653515982.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig60 Length=548
Score E Sequences producing significant alignments: (Bits) Value gi|12323033|gb|AAG51510.1|AC058785_13 peptide chain release fact 247 2e-65 gi|42562784|ref|NP_176032.2| translation release factor/ tran... 247 2e-65 gi|12321742|gb|AAG50902.1|AC069159_3 peptide chain release facto 234 1e-61 gi|115452569|ref|NP_001049885.1| Os03g0305700 [Oryza sativa (... 232 6e-61 gi|10092253|gb|AAG12666.1|AC027033_1 peptide chain release fa... 142 1e-33 gi|46406291|emb|CAG25777.1| putative translation releasing facto 127 2e-29 gi|92867892|gb|ABE78013.1| Peptide chain release factor 2 [Medic 127 3e-29 gi|30692913|ref|NP_851097.1| HCF109 (HIGH CHLOROPHYLL FLUORES... 124 2e-28 gi|30692908|ref|NP_851096.1| HCF109 (HIGH CHLOROPHYLL FLUORES... 124 2e-28 gi|115472651|ref|NP_001059924.1| Os07g0546600 [Oryza sativa (... 123 5e-28 gi|116058248|emb|CAL53437.1| Mitochondrial polypeptide chain ... 115 1e-25 gi|116058310|emb|CAL53499.1| Mitochondrial polypeptide chain ... 105 1e-22 gi|115462961|ref|NP_001055080.1| Os05g0277300 [Oryza sativa (... 94.0 3e-19 gi|48926665|gb|AAT47454.1| putative peptide chain release fac... 94.0 3e-19 gi|42571265|ref|NP_973706.1| translation release factor/ tran... 91.3 2e-18 gi|3522941|gb|AAC34223.1| putative peptide chain release factor 91.3 2e-18 gi|42569997|ref|NP_182225.3| translation release factor/ tran... 91.3 2e-18 gi|116060788|emb|CAL57266.1| unnamed protein product [Ostreococc 75.5 1e-13 gi|110735990|dbj|BAE99969.1| putative peptide chain release fact 72.4 1e-12 gi|115486501|ref|NP_001068394.1| Os11g0657100 [Oryza sativa (... 72.4 1e-12 gi|92890252|gb|ABE90269.1| Class I peptide chain release fact... 70.1 5e-12 gi|115463557|ref|NP_001055378.1| Os05g0375600 [Oryza sativa (... 66.2 7e-11 gi|12322377|gb|AAG51209.1|AC051630_6 peptide chain release fa... 63.9 3e-10 gi|22331914|ref|NP_191850.2| APG3 (ALBINO AND PALE GREEN); tr... 63.9 3e-10 gi|7573420|emb|CAB87736.1| translation releasing factor RF-1-... 63.9 3e-10 gi|30692851|ref|NP_174601.2| translation release factor [Arab... 63.9 3e-10 gi|92886710|gb|ABE88459.1| Class I peptide chain release fact... 60.1 5e-09 gi|115441511|ref|NP_001045035.1| Os01g0887400 [Oryza sativa (... 58.5 1e-08 gi|30692917|ref|NP_198466.2| HCF109 (HIGH CHLOROPHYLL FLUORES... 55.1 2e-07 gi|22135990|gb|AAM91577.1| putative protein [Arabidopsis thal... 50.1 5e-06 gi|30694592|ref|NP_191278.2| translation release factor [Arabido 50.1 5e-06 gi|6735298|emb|CAB68125.1| putative protein [Arabidopsis thalian 50.1 5e-06 gi|46575986|gb|AAT01347.1| unknown protein [Oryza sativa (japoni 41.6 0.002 gi|56784339|dbj|BAD82360.1| unknown protein [Oryza sativa (ja... 40.4 0.004 gi|51038077|gb|AAT93880.1| hypothetical protein [Oryza sativa (j 40.0 0.005 gi|116309001|emb|CAH66120.1| OSIGBa0146N20.5 [Oryza sativa (indi 32.3 1.1 gi|116309194|emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa (indi 32.3 1.1 gi|116317795|emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa (indi 31.2 2.5 gi|116308973|emb|CAH66097.1| OSIGBa0114I04.4 [Oryza sativa (indi 31.2 2.5 gi|116309186|emb|CAH66282.1| OSIGBa0116O04.4 [Oryza sativa (indi 31.2 2.5 gi|116309038|emb|CAH66151.1| OSIGBa0097I11.3 [Oryza sativa (indi 31.2 2.5 gi|116309187|emb|CAH66283.1| OSIGBa0116O04.5 [Oryza sativa (indi 31.2 2.5 gi|116309037|emb|CAH66150.1| OSIGBa0097I11.2 [Oryza sativa (indi 31.2 2.5 gi|110288688|gb|ABB46921.2| retrotransposon protein, putative... 31.2 2.5 gi|108708194|gb|ABF95989.1| retrotransposon protein, putative... 31.2 2.5 gi|90265093|emb|CAH67706.1| H0512B01.1 [Oryza sativa (indica cul 31.2 2.5 gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza sativa (japo 31.2 2.5 gi|19881768|gb|AAM01169.1|AC113336_21 Putative retroelement [Ory 31.2 2.5 gi|116309702|emb|CAH66749.1| H0409D10.7 [Oryza sativa (indica cu 30.8 3.2 gi|108705933|gb|ABF93728.1| retrotransposon protein, putative... 30.4 4.2 gi|116317875|emb|CAH65904.1| H0207B04.5 [Oryza sativa (indica cu 29.6 7.1 gi|116317882|emb|CAH65910.1| OSIGBa0102O13.1 [Oryza sativa (indi 29.6 7.1 gi|116308880|emb|CAH66015.1| OSIGBa0093M15.5 [Oryza sativa (indi 29.6 7.1 gi|115435252|ref|NP_001042384.1| Os01g0213700 [Oryza sativa (... 29.6 7.1 gi|19310546|gb|AAL85006.1| unknown protein [Arabidopsis thaliana 29.6 7.1 gi|4103243|gb|AAD04807.1| BIPOSTO [Arabidopsis thaliana] 29.6 7.1 gi|30687957|ref|NP_568400.2| NPH4 (NON-PHOTOTROPHIC HYPOCOTYL... 29.6 7.1 gi|30687943|ref|NP_851046.1| NPH4 (NON-PHOTOTROPHIC HYPOCOTYL... 29.6 7.1 gi|4104929|gb|AAD02218.1| auxin response factor 7 [Arabidopsis t 29.6 7.1 gi|30687949|ref|NP_851047.1| NPH4 (NON-PHOTOTROPHIC HYPOCOTYL... 29.6 7.1 gi|22165100|gb|AAM93717.1| hypothetical protein [Oryza sativa... 29.3 9.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 417 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 548 Length of database: 101054579 Length adjustment: 106 Effective length of query: 442 Effective length of database: 71019585 Effective search space: 5397488460 Effective search space used: 5397488460 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)