Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168932281-29361-199880172677.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig76 Length=971
Score E Sequences producing significant alignments: (Bits) Value gi|1332579|emb|CAA66667.1| polyubiquitin [Pinus sylvestris] 259 1e-82 gi|312160|emb|CAA51679.1| ubiquitin [Solanum lycopersicum] 259 1e-82 gi|902584|gb|AAC49013.1| polyubiquitin containing 7 ubiquitin mo 259 1e-82 gi|87240493|gb|ABD32351.1| Ubiquitin [Medicago truncatula] 259 1e-82 gi|248337|gb|AAB21993.1| polyubiquitin [Zea mays] >gi|248339|... 259 1e-82 gi|30680052|ref|NP_849299.1| UBQ10 (POLYUBIQUITIN 10); protei... 259 1e-82 gi|23397122|gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabi 259 1e-82 gi|3126967|gb|AAC16012.1| polyubiquitin [Elaeagnus umbellata] 259 1e-82 gi|418854|pir||S30151 polyubiquitin 6 - parsley >gi|288112|em... 259 1e-82 gi|18824|emb|CAA40324.1| hexaubiquitin protein [Helianthus an... 259 1e-82 gi|16660462|gb|AAL27564.1|AF429430_1 polyubiquitin OUB2 [Olea eu 259 1e-82 gi|4115337|gb|AAD03343.1| ubiquitin [Pisum sativum] 259 1e-82 gi|2760347|gb|AAB95251.1| ubiquitin [Arabidopsis thaliana] 259 1e-82 gi|170352|gb|AAA34123.1| hexameric polyubiquitin >gi|870792|g... 259 1e-82 gi|115444401|ref|NP_001045980.1| Os02g0161900 [Oryza sativa (... 259 1e-82 gi|1684855|gb|AAB36545.1| ubiquitin-like protein [Phaseolus vulg 259 1e-82 gi|115460714|ref|NP_001053957.1| Os04g0628100 [Oryza sativa (... 259 1e-82 gi|18412930|ref|NP_567291.1| UBQ10 (POLYUBIQUITIN 10); protei... 259 1e-82 gi|68160568|gb|AAY86773.1| polyubiquitin [Thlaspi caerulescens] 259 1e-82 gi|116312012|emb|CAJ86369.1| OSIGBa0117N13.13 [Oryza sativa (... 259 1e-82 gi|61223100|gb|AAX40652.1| polyubiquitin [Oryza sativa (japonica 259 1e-82 gi|15982787|gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thal 259 1e-82 gi|902586|gb|AAC49014.1| ubiquitin 259 1e-82 gi|4809266|gb|AAD30173.1|AF148448_1 polyubiquitin [Sporobolus... 259 1e-82 gi|899608|gb|AAC49025.1| polyubiquitin 259 1e-82 gi|2760349|gb|AAB95252.1| ubiquitin [Arabidopsis thaliana] 259 1e-82 gi|1800281|gb|AAB68045.1| polyubiquitin [Fragaria x ananassa] 259 1e-82 gi|33323472|gb|AAQ07453.1| ubiquitin [Musa acuminata] 259 1e-82 gi|39546234|emb|CAE04243.3| OSJNBa0089N06.4 [Oryza sativa (japon 259 1e-82 gi|20589|emb|CAA34886.1| unnamed protein product [Pisum sativ... 259 1e-82 gi|18420267|ref|NP_568397.1| UBQ4; protein binding [Arabidops... 259 1e-82 gi|170354|gb|AAA34124.1| pentameric polyubiquitin 259 1e-82 gi|602076|emb|CAA54603.1| pentameric polyubiquitin [Nicotiana ta 259 1e-82 gi|18803|emb|CAA40323.1| polyubiquitin protein [Helianthus annuu 259 1e-82 gi|42572839|ref|NP_974516.1| UBQ10 (POLYUBIQUITIN 10); protei... 259 1e-82 gi|16660459|gb|AAL27563.1|AF429429_1 polyubiquitin OUB1 [Olea eu 259 1e-82 gi|53850091|emb|CAH59740.1| polyubiquitin [Plantago major] 259 1e-82 gi|30679945|ref|NP_851029.1| UBQ3 (POLYUBIQUITIN 3); protein ... 259 1e-82 gi|320608|pir||S28426 polyubiquitin 4 - wild oat >gi|15989|em... 259 1e-82 gi|18412077|ref|NP_567247.1| UBQ14; protein binding [Arabidop... 259 1e-82 gi|16071|emb|CAA48140.1| ubiquitin [Antirrhinum majus] 259 1e-82 gi|116060737|emb|CAL57215.1| Ubiquitin/60s ribosomal protein ... 259 1e-82 gi|226763|prf||1604470A poly-ubiquitin 259 1e-82 gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis t 259 1e-82 gi|30523391|gb|AAP31578.1| ubiquitin [Hevea brasiliensis] 259 1e-82 gi|53850089|emb|CAH59739.1| polyubiquitin [Plantago major] 259 1e-82 gi|28804499|dbj|BAC57955.1| polyubiquitin [Aster tripolium] 259 1e-82 gi|18412785|ref|NP_567286.1| UBQ11 (UBIQUITIN 11); protein bi... 259 1e-82 gi|115187323|gb|ABI84246.1| polyubiquitin 10 [Arachis hypogaea] 259 1e-82 gi|110736490|dbj|BAF00213.1| polyubiquitin 4 UBQ4 [Arabidopsis t 259 2e-82 gi|168304|gb|AAA33401.1| ubiquitin 259 2e-82 gi|2760345|gb|AAB95250.1| ubiquitin [Arabidopsis thaliana] 259 2e-82 gi|3603456|gb|AAC35858.1| polyubiquitin [Capsicum chinense] 259 3e-82 gi|35187449|gb|AAQ84316.1| fiber polyubiquitin [Gossypium barbad 257 3e-82 gi|3789942|gb|AAC67552.1| polyubiquitin [Saccharum hybrid cultiv 257 4e-82 gi|28436479|gb|AAO43306.1| putative polyubiquitin [Arabidopsis t 256 4e-82 gi|21592581|gb|AAM64530.1| ubiquitin homolog [Arabidopsis thalia 256 5e-82 gi|395295|emb|CAA52290.1| polyubiquitin [Volvox carteri f. nagar 256 9e-82 gi|28394784|gb|AAO42469.1| putative polyubiquitin [Arabidopsis l 259 9e-82 gi|28436483|gb|AAO43308.1| putative polyubiquitin [Arabidopsis t 256 9e-82 gi|57282601|emb|CAD27944.1| polyubiquitin-like [Oryza sativa] 257 9e-82 gi|71534894|gb|AAZ32851.1| pentameric polyubiquitin [Medicago sa 259 9e-82 gi|28436472|gb|AAO43303.1| putative polyubiquitin [Arabidopsis t 259 1e-81 gi|28436474|gb|AAO43304.1| putative polyubiquitin [Arabidopsis t 259 1e-81 gi|7439572|pir||T02358 ubiquitin homolog T8F5.13 - Arabidopsi... 259 1e-81 gi|15218646|ref|NP_176714.1| UBQ13 [Arabidopsis thaliana] 259 1e-81 gi|39939489|gb|AAR32784.1| polyubiquitin [Clusia minor] 259 2e-81 gi|6118549|gb|AAF04147.1| ubiquitin precursor [Hevea brasiliensi 254 2e-81 gi|28436485|gb|AAO43309.1| putative polyubiquitin [Arabidopsis t 254 2e-81 gi|14596193|gb|AAK68824.1| Unknown protein [Arabidopsis thaliana 259 3e-81 gi|102655942|gb|AAY33920.2| polyubiquitin [Euphorbia characias] 255 3e-81 gi|28436476|gb|AAO43305.1| putative polyubiquitin [Arabidopsis t 259 3e-81 gi|2894304|emb|CAA11267.1| polyubiquitin [Nicotiana tabacum] 254 6e-81 gi|28436487|gb|AAO43310.1| putative polyubiquitin [Arabidopsis t 251 2e-80 gi|433970|emb|CAA82268.1| polyubiquitin [Acetabularia peniculus] 253 2e-80 gi|2894308|emb|CAA11269.1| polyubiquitin [Nicotiana tabacum] 252 5e-80 gi|18421671|ref|NP_568552.1| UBQ9 [Arabidopsis thaliana] >gi|... 249 6e-78 gi|3789940|gb|AAC67551.1| tetra-ubiquitin [Saccharum hybrid cult 244 7e-78 gi|18405196|ref|NP_564675.1| UBQ12 (UBIQUITIN 12) [Arabidopsis t 241 5e-77 gi|6934302|gb|AAF31707.1|AF221858_1 polyubiquitin [Euphorbia esu 233 7e-75 gi|1684857|gb|AAB36546.1| polyubiquitin [Phaseolus vulgaris] 233 7e-75 gi|82512|pir||PS0380 ubiquitin precursor - rice (fragment) >g... 259 1e-74 gi|29836445|gb|AAM78180.1| putative polyubiquitin [Gossypium ... 259 2e-74 gi|755763|emb|CAA27751.1| unnamed protein product [Hordeum vulga 259 2e-74 gi|93278214|gb|ABF06579.1| polyubiquitin [Gladiolus grandiflorus 259 2e-74 gi|40287484|gb|AAR83856.1| hexameric polyubiquitin 6PU11 [Capsic 259 2e-74 gi|73747822|gb|AAZ82816.1| ubiquitin monomer protein [Morus mong 259 3e-74 gi|61889379|emb|CAI51312.2| polyubiquitin [Capsicum chinense] 257 5e-74 gi|21554192|gb|AAM63271.1| unknown [Arabidopsis thaliana] 256 8e-74 gi|37542506|gb|AAL25813.1| polyubiquitin [Prunus avium] 257 2e-73 gi|52077254|dbj|BAD46297.1| pentameric polyubiquitin-like [Or... 251 6e-71 gi|115469478|ref|NP_001058338.1| Os06g0673500 [Oryza sativa (... 251 6e-71 gi|18398638|ref|NP_566357.1| UBQ8 [Arabidopsis thaliana] >gi|... 226 2e-69 gi|6650740|gb|AAF21992.1| polyubiquitin [Lilium longiflorum] 231 3e-66 gi|33327286|gb|AAQ08999.1| polyubiquitin 2 [Phaseolus vulgaris] 224 4e-64 gi|111140007|gb|ABH06365.1| ubiquitin [Sorbus aucuparia] 240 7e-63 gi|30983942|gb|AAP40646.1| putative polyubiquitin [Gossypium bar 220 7e-63 gi|17016983|gb|AAL33551.1|AF436850_1 polyubiquitin [Cucumis melo 189 7e-61 gi|6114876|dbj|BAA85750.1| polyubiquitin [Cucumis melo] 189 2e-60 gi|20562909|gb|AAM22748.1| polyubiquitin 2 [Deschampsia antarcti 219 2e-59
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 1345 Number of extensions: 31 Number of successful extensions: 10 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 9 Number of HSP's successfully gapped: 9 Length of query: 971 Length of database: 101054579 Length adjustment: 113 Effective length of query: 858 Effective length of database: 69036142 Effective search space: 14497589820 Effective search space used: 14497589820 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 68 (30.8 bits)