RID=1168936426-7615-136672121336.BLASTQ1, Contig83

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168936426-7615-136672121336.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig83
Length=580

Distribution of 12 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|1173043|sp|P46291|RL38_LYCES  60S ribosomal protein L38 >gi...  69.7    7e-12 
gi|15224284|ref|NP_181874.1|  structural constituent of riboso...  66.6    6e-11 
gi|92896721|gb|ABE93319.1|  Ribosomal L38e protein [Medicago trun  64.3    3e-10
gi|27497793|gb|AAO13217.1|  60S ribosomal protein L38 [Chlamydomo  63.5    5e-10 
gi|115485315|ref|NP_001067801.1|  Os11g0433900 [Oryza sativa (...  62.8    9e-10 
gi|115464781|ref|NP_001055990.1|  Os05g0507200 [Oryza sativa (...  60.5    4e-09 
gi|116060536|emb|CAL55872.1|  60S ribosomal protein L38 (ISS) [Os  58.5    2e-08
gi|1835729|gb|AAB46717.1|  ribosomal protein [Oryza sativa]        36.2    0.086 
gi|115472653|ref|NP_001059925.1|  Os07g0546700 [Oryza sativa (...  35.4    0.15  
gi|27497473|emb|CAD59868.1|  reverse transcriptase [Cicer arietin  32.3    1.2  
gi|116309388|emb|CAH66466.1|  OSIGBa0113L04.3 [Oryza sativa (indi  29.6    8.0  
gi|115458164|ref|NP_001052682.1|  Os04g0400500 [Oryza sativa (...  29.6    8.0

Alignments

 

>gi|1173043|sp|P46291|RL38_LYCES  60S ribosomal protein L38
 gi|313027|emb|CAA49599.1|  ribosomal protein L38 [Solanum lycopersicum]
 gi|77745467|gb|ABB02632.1|  ribosomal protein L38-like [Solanum tuberosum]
Length=69

 Score = 69.7 bits (169),  Expect = 7e-12
 Identities = 33/34 (97%), Positives = 33/34 (97%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCSKYLYTLCVSD EKADKLKQSLPPGLSVQDL
Sbjct  36   VRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL  69


>gi|15224284|ref|NP_181874.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|15231705|ref|NP_191513.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|3122724|sp|O22860|RL38_ARATH  60S ribosomal protein L38
 gi|13605720|gb|AAK32853.1|AF361841_1  AT3g59540/T16L24_90 [Arabidopsis thaliana]
 gi|2289009|gb|AAB64338.1|  60S ribosomal protein L38 [Arabidopsis thaliana]
 gi|6996290|emb|CAB75451.1|  60S RIBOSOMAL PROTEIN L38-like protein [Arabidopsis thaliana]
 gi|21593879|gb|AAM65846.1|  60S RIBOSOMAL PROTEIN L38-like protein [Arabidopsis thaliana]
 gi|23507773|gb|AAN38690.1|  At3g59540/T16L24_90 [Arabidopsis thaliana]
 gi|90962934|gb|ABE02391.1|  At2g43460 [Arabidopsis thaliana]
Length=69

 Score = 66.6 bits (161),  Expect = 6e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCS+YLYTLCV D EKADKLKQSLPPGLSVQDL
Sbjct  36   VRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL  69


>gi|92896721|gb|ABE93319.1|  Ribosomal L38e protein [Medicago truncatula]
Length=69

 Score = 64.3 bits (155),  Expect = 3e-10
 Identities = 31/34 (91%), Positives = 31/34 (91%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCSKYLYTL V D EKADKLKQSLPPGLSVQDL
Sbjct  36   VRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL  69


>gi|27497793|gb|AAO13217.1|  60S ribosomal protein L38 [Chlamydomonas reinhardtii]
Length=69

 Score = 63.5 bits (153),  Expect = 5e-10
 Identities = 28/34 (82%), Positives = 33/34 (97%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCSKYLYTLCV+D++KADKLKQSLPPGL+V +L
Sbjct  36   VRCSKYLYTLCVADSDKADKLKQSLPPGLNVTEL  69


>gi|115485315|ref|NP_001067801.1|  Os11g0433900 [Oryza sativa (japonica cultivar-group)]
 gi|33146530|dbj|BAC79676.1|  putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-group)]
 gi|62734292|gb|AAX96401.1|  Ribosomal L38e protein family [Oryza sativa (japonica cultivar-group)]
 gi|77550334|gb|ABA93131.1|  60S ribosomal protein L38, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113645023|dbj|BAF28164.1|  Os11g0433900 [Oryza sativa (japonica cultivar-group)]
Length=69

 Score = 62.8 bits (151),  Expect = 9e-10
 Identities = 28/34 (82%), Positives = 33/34 (97%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCSKYLYTLCV DA+KA+KLKQSLPPGL+VQ++
Sbjct  36   VRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV  69


>gi|115464781|ref|NP_001055990.1|  Os05g0507200 [Oryza sativa (japonica cultivar-group)]
 gi|46981281|gb|AAT07599.1|  putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-group)]
 gi|113579541|dbj|BAF17904.1|  Os05g0507200 [Oryza sativa (japonica cultivar-group)]
Length=69

 Score = 60.5 bits (145),  Expect = 4e-09
 Identities = 26/34 (76%), Positives = 32/34 (94%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCS+YLYTLCV D +KA+KLKQSLPPGL+VQ++
Sbjct  36   VRCSRYLYTLCVHDTDKANKLKQSLPPGLTVQEV  69


>gi|116060536|emb|CAL55872.1|  60S ribosomal protein L38 (ISS) [Ostreococcus tauri]
Length=91

 Score = 58.5 bits (140),  Expect = 2e-08
 Identities = 27/34 (79%), Positives = 30/34 (88%), Gaps = 0/34 (0%)
 Frame = -3

Query  407  VRCSKYLYTLCVSDAEKADKLKQSLPPGLSVQDL  306
            VRCSKYLYTLCV +A+KA KLKQSLPPGL V D+
Sbjct  58   VRCSKYLYTLCVDNADKAAKLKQSLPPGLQVIDV  91


>gi|1835729|gb|AAB46717.1|  ribosomal protein [Oryza sativa]
Length=79

 Score = 36.2 bits (82),  Expect = 0.086
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 0/57 (0%)
 Frame = -2

Query  468  KEKXAXLCKNQEEQRCCQVQGPLLQVLVHTLCL*C*EG*QVEAVSSSRFERPRPVKI  298
            +E+   +  +QE+Q   QVQG LLQV +H L L   +G Q +AV+  RF+ P  + I
Sbjct  16   EEEGREVGADQEDQGRRQVQGALLQVPLHPLRLRRRQGQQAQAVAPPRFDCPGGLSI  72


>gi|115472653|ref|NP_001059925.1|  Os07g0546700 [Oryza sativa (japonica cultivar-group)]
 gi|113611461|dbj|BAF21839.1|  Os07g0546700 [Oryza sativa (japonica cultivar-group)]
Length=94

 Score = 35.4 bits (80),  Expect = 0.15
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 0/57 (0%)
 Frame = -2

Query  468  KEKXAXLCKNQEEQRCCQVQGPLLQVLVHTLCL*C*EG*QVEAVSSSRFERPRPVKI  298
            +E+   +  +QE+Q   QVQG LLQV +H L L   +G Q +AV+S  F+ P  + I
Sbjct  31   EEEGREVGADQEDQGRRQVQGALLQVPLHPLRLRRRQGQQAQAVASPGFDCPGGLSI  87


>gi|27497473|emb|CAD59868.1|  reverse transcriptase [Cicer arietinum]
Length=37

 Score = 32.3 bits (72),  Expect = 1.2
 Identities = 12/13 (92%), Positives = 12/13 (92%), Gaps = 0/13 (0%)
 Frame = +1

Query  1   PTXHAPGRHGGRG  39
           PT HAPGRHGGRG
Sbjct  5   PTSHAPGRHGGRG  17


>gi|116309388|emb|CAH66466.1|  OSIGBa0113L04.3 [Oryza sativa (indica cultivar-group)]
Length=207

 Score = 29.6 bits (65),  Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
 Frame = -3

Query  74   SXLRCYHCLIEFPRPPXRPGAC  9
            S  +CYHC  E P PP +P  C
Sbjct  108  STQQCYHCCPEPPPPPPKPKPC  129


>gi|115458164|ref|NP_001052682.1|  Os04g0400500 [Oryza sativa (japonica cultivar-group)]
 gi|38605807|emb|CAE05278.3|  OSJNBb0014D23.12 [Oryza sativa (japonica cultivar-group)]
 gi|113564253|dbj|BAF14596.1|  Os04g0400500 [Oryza sativa (japonica cultivar-group)]
Length=213

 Score = 29.6 bits (65),  Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
 Frame = -3

Query  74   SXLRCYHCLIEFPRPPXRPGAC  9
            S  +CYHC  E P PP +P  C
Sbjct  114  STQQCYHCCPEPPPPPPKPKPC  135

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 323
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 580
Length of database: 101054579
Length adjustment: 107
Effective length of query: 473
Effective length of database: 70736236
Effective search space: 6083316296
Effective search space used: 6083316296
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)