RID=1168936787-482-78102969891.BLASTQ1, Contig89

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168936787-482-78102969891.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig89
Length=429

Distribution of 36 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|16930745|gb|AAL32032.1|AF439273_1  NADH-ubiquinone oxidoreduct  99.4    4e-28
gi|115452651|ref|NP_001049926.1|  Os03g0313000 [Oryza sativa (...   100    5e-28 
gi|18423437|ref|NP_568778.1|  oxidoreductase, acting on NADH o...   114    9e-26 
gi|52354405|gb|AAU44523.1|  hypothetical protein AT4G28005 [Arabi  43.5    5e-08 
gi|116059417|emb|CAL55124.1|  NADH:ubiquinone oxidoreductase, ...  49.7    1e-07
gi|464258|sp|P80266|NDUA5_SOLTU  NADH dehydrogenase [ubiquinon...  39.3    7e-04
gi|22328992|ref|NP_680745.1|  unknown protein [Arabidopsis thalia  36.2    0.004 
gi|52354407|gb|AAU44524.1|  hypothetical protein AT4G28005 [Arabi  36.2    0.004 
gi|45171594|gb|AAQ73139.2|  mitochondrial NADH:ubiquinone oxid...  38.5    0.008 
gi|32488049|emb|CAE02862.1|  OSJNBa0014F04.28 [Oryza sativa (j...  32.0    0.79  
gi|116309142|emb|CAH66244.1|  OSIGBa0145C02.9 [Oryza sativa (indi  31.6    1.0  
gi|108707599|gb|ABF95394.1|  transposon protein, putative, Mut...  31.6    1.0  
gi|108710242|gb|ABF98037.1|  Transposable element protein, put...  31.6    1.0  
gi|61656661|emb|CAI64479.1|  OSJNBa0032N05.16 [Oryza sativa (japo  31.6    1.0  
gi|41469590|gb|AAS07333.1|  hypothetical protein [Oryza sativa (j  31.6    1.0   
gi|27476093|gb|AAO17024.1|  Putative retroelement [Oryza sativ...  31.6    1.0   
gi|77551876|gb|ABA94673.1|  transposon protein, putative, Muta...  31.6    1.0  
gi|108710357|gb|ABF98152.1|  transposon protein, putative, Mut...  30.8    1.8  
gi|40538931|gb|AAR87188.1|  putative  MuDR family transposase ...  30.8    1.8   
gi|22655792|gb|AAN04209.1|  Putative retroelement [Oryza sativ...  30.8    1.8   
gi|40253293|dbj|BAD05228.1|  hypothetical protein [Oryza sativ...  30.8    1.8   
gi|28269461|gb|AAO38004.1|  putative mutator-like transposase ...  30.0    3.0   
gi|21671916|gb|AAM74278.1|AC083943_18  Putative transposable e...  30.0    3.0   
gi|38345422|emb|CAD41543.2|  OSJNBb0091E11.13 [Oryza sativa (japo  30.0    3.0   
gi|77551154|gb|ABA93951.1|  Transposable element protein, puta...  29.3    5.1  
gi|24796769|gb|AAN64446.1|  putative circumsporozoite protein ...  28.9    6.7   
gi|54291754|gb|AAV32123.1|  putative polyprotein [Oryza sativa (j  28.5    8.7  
gi|49328188|gb|AAT58884.1|  unknown protein [Oryza sativa (japoni  28.5    8.7

Alignments

 

>gi|16930745|gb|AAL32032.1|AF439273_1  NADH-ubiquinone oxidoreductase [Retama raetam]
Length=153

 Score = 99.4 bits (246),  Expect(2) = 4e-28
 Identities = 54/93 (58%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = +3

Query  147  YTKTLKEIQAVPEDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXVEELIEEARD  326
            Y+KTL EI+AVPEDEGYRK   E  T     + +  +   D         VEELIEEA+D
Sbjct  23   YSKTLNEIKAVPEDEGYRKAV-ESFTSHRLKVCQEEQDWEDIEKKLGCGQVEELIEEAQD  81

Query  327  ELTLIGKMIEWDPWGVPDDYECXVIENDAPVPQ  425
            EL LI  M EW PWGVPDDYEC VIENDAPVP+
Sbjct  82   ELKLISLMNEWKPWGVPDDYECEVIENDAPVPK  114


 Score = 44.3 bits (103),  Expect(2) = 4e-28
 Identities = 21/22 (95%), Positives = 22/22 (100%), Gaps = 0/22 (0%)
 Frame = +2

Query  80   KKTTGIVGLDVVPNAREVLIGL  145
            K+TTGIVGLDVVPNAREVLIGL
Sbjct  1    KQTTGIVGLDVVPNAREVLIGL  22


>gi|115452651|ref|NP_001049926.1|  Os03g0313000 [Oryza sativa (japonica cultivar-group)]
 gi|108707801|gb|ABF95596.1|  ETC complex I subunit conserved region family protein, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113548397|dbj|BAF11840.1|  Os03g0313000 [Oryza sativa (japonica cultivar-group)]
Length=173

 Score =  100 bits (248),  Expect(2) = 5e-28
 Identities = 55/103 (53%), Positives = 64/103 (62%), Gaps = 21/103 (20%)
 Frame = +3

Query  147  YTKTLKEIQAVPEDEGYRKGRGELHTPPFEGLPRRR----------RLGNDRVSASDAAX  296
            YT+TLKEI+AVP+DEGYRK          E   R R          +   DR+       
Sbjct  45   YTRTLKEIEAVPKDEGYRKA--------VESFTRHRLQICQEEDDWKRIEDRIGCGQ---  93

Query  297  VEELIEEARDELTLIGKMIEWDPWGVPDDYECXVIENDAPVPQ  425
            VEELIEEA+DEL LI KMIEWDPWGVPDDYEC VIE+D  +P+
Sbjct  94   VEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIEDDTLIPK  136


 Score = 43.1 bits (100),  Expect(2) = 5e-28
 Identities = 21/28 (75%), Positives = 24/28 (85%), Gaps = 0/28 (0%)
 Frame = +2

Query  62   RCWRR*KKTTGIVGLDVVPNAREVLIGL  145
            R  R  K+TTGIVGL+VVPNAREVL+GL
Sbjct  17   RAARAVKETTGIVGLEVVPNAREVLVGL  44


>gi|18423437|ref|NP_568778.1|  oxidoreductase, acting on NADH or NADPH [Arabidopsis thaliana]
 gi|25090853|sp|Q9FLX7|NDUA5_ARATH  Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 
5, mitochondrial precursor
 gi|10177098|dbj|BAB10432.1|  unnamed protein product [Arabidopsis thaliana]
 gi|15809966|gb|AAL06910.1|  AT5g52840/MXC20_6 [Arabidopsis thaliana]
 gi|18958052|gb|AAL79599.1|  AT5g52840/MXC20_6 [Arabidopsis thaliana]
Length=169

 Score =  114 bits (286),  Expect = 9e-26
 Identities = 63/102 (61%), Positives = 70/102 (68%), Gaps = 19/102 (18%)
 Frame = +3

Query  147  YTKTLKEIQAVPEDEGYRKG-----RGELHT----PPFEGLPRRRRLGNDRVSASDAAXV  299
            Y+KTLKEIQAVPEDEGYRK      R  L+       +E + +R   G           V
Sbjct  37   YSKTLKEIQAVPEDEGYRKAVESFTRQRLNVCKEEEDWEMIEKRLGCGQ----------V  86

Query  300  EELIEEARDELTLIGKMIEWDPWGVPDDYECXVIENDAPVPQ  425
            EELIEEARDELTLIGKMIEWDPWGVPDDYEC VIENDAP+P+
Sbjct  87   EELIEEARDELTLIGKMIEWDPWGVPDDYECEVIENDAPIPK  128


 Score = 45.4 bits (106),  Expect = 7e-05
 Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query  58   RPLLAKVKEDDGDRRIRRGPQRQGspdrsitprp*rrsrpfprtrAIVKAVESFTRHRLK  237
            RPLLAKVK+  G   +   P  +      +  +  +  +  P      KAVESFTR RL 
Sbjct  8    RPLLAKVKQTTGIVGLDVVPNARA-VLIDLYSKTLKEIQAVPEDEGYRKAVESFTRQRLN  66

Query  238  VCQEEGDWEMIE  273
            VC+EE DWEMIE
Sbjct  67   VCKEEEDWEMIE  78


>gi|52354405|gb|AAU44523.1|  hypothetical protein AT4G28005 [Arabidopsis thaliana]
Length=52

 Score = 43.5 bits (101),  Expect(2) = 5e-08
 Identities = 20/23 (86%), Positives = 22/23 (95%), Gaps = 0/23 (0%)
 Frame = +3

Query  297  VEELIEEARDELTLIGKMIEWDP  365
            VEELIEEA DELTL+GKMIE+DP
Sbjct  26   VEELIEEASDELTLVGKMIEFDP  48


 Score = 32.3 bits (72),  Expect(2) = 5e-08
 Identities = 13/17 (76%), Positives = 14/17 (82%), Gaps = 0/17 (0%)
 Frame = +1

Query  223  RHRLKVCQEEGDWEMIE  273
            RHRLKVC EE DW +IE
Sbjct  2    RHRLKVCPEEEDWGVIE  18


>gi|116059417|emb|CAL55124.1|  NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit (ISS) [Ostreococcus 
tauri]
Length=146

 Score = 49.7 bits (117),  Expect(2) = 1e-07
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
 Frame = +3

Query  153  KTLKEIQA-VPEDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAX----VEELIEE  317
            + LKE+   +P D GYR+   E++T   E L R R  G   V   + A     +EEL E 
Sbjct  50   RVLKEVATGIPSDAGYRRVVEEMYT---ERLKRAR--GGASVEEVERAIGEGQIEELYEI  104

Query  318  ARDELTLIGKMIEWDPWGVPDDYECXVIENDAPVP  422
             +DEL LI KM EW PW +  ++E  VIE+    P
Sbjct  105  TKDELALIPKMREWKPWEL--EHEIEVIEHPKENP  137


 Score = 24.6 bits (52),  Expect(2) = 1e-07
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
 Frame = +2

Query  80   KKTTGIVGLDVVPNAR  127
            K+TTGIVGLDV+   +
Sbjct  26   KQTTGIVGLDVLDEGK  41


>gi|464258|sp|P80266|NDUA5_SOLTU  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 
(NADH-ubiquinone oxidoreductase 22.5 kDa subunit) (Complex I-22.5kD) 
(CI-22.5kD)
Length=37

 Score = 39.3 bits (90),  Expect(2) = 7e-04
 Identities = 19/22 (86%), Positives = 20/22 (90%), Gaps = 0/22 (0%)
 Frame = +2

Query  80   KKTTGIVGLDVVPNAREVLIGL  145
            K+TTGIVGL VVPNAREVLI L
Sbjct  4    KETTGIVGLXVVPNAREVLINL  25


 Score = 22.3 bits (46),  Expect(2) = 7e-04
 Identities = 9/12 (75%), Positives = 11/12 (91%), Gaps = 0/12 (0%)
 Frame = +3

Query  147  YTKTLKEIQAVP  182
            Y KTL+EI+AVP
Sbjct  26   YRKTLEEIKAVP  37


>gi|22328992|ref|NP_680745.1|  unknown protein [Arabidopsis thaliana]
Length=115

 Score = 36.2 bits (82),  Expect(2) = 0.004
 Identities = 17/19 (89%), Positives = 18/19 (94%), Gaps = 0/19 (0%)
 Frame = +3

Query  297  VEELIEEARDELTLIGKMI  353
            VEELIEEA DELTL+GKMI
Sbjct  42   VEELIEEASDELTLVGKMI  60


 Score = 22.7 bits (47),  Expect(2) = 0.004
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 0/14 (0%)
 Frame = +1

Query  232  LKVCQEEGDWEMIE  273
            ++VC EE DW +IE
Sbjct  21   VEVCPEEEDWGVIE  34


>gi|52354407|gb|AAU44524.1|  hypothetical protein AT4G28005 [Arabidopsis thaliana]
Length=112

 Score = 36.2 bits (82),  Expect(2) = 0.004
 Identities = 17/19 (89%), Positives = 18/19 (94%), Gaps = 0/19 (0%)
 Frame = +3

Query  297  VEELIEEARDELTLIGKMI  353
            VEELIEEA DELTL+GKMI
Sbjct  42   VEELIEEASDELTLVGKMI  60


 Score = 22.7 bits (47),  Expect(2) = 0.004
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 0/14 (0%)
 Frame = +1

Query  232  LKVCQEEGDWEMIE  273
            ++VC EE DW +IE
Sbjct  21   VEVCPEEEDWGVIE  34


>gi|45171594|gb|AAQ73139.2|  mitochondrial NADH:ubiquinone oxidoreductase 18 kDa subunit [Chlamydomonas 
reinhardtii]
Length=165

 Score = 38.5 bits (88),  Expect = 0.008
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
 Frame = +3

Query  150  TKTLKEIQAVPEDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAX-------VEEL  308
            T+ L  I+A PE   YRK                 RL   + + SDAA        +EEL
Sbjct  69   TEVLSSIKAAPEGSDYRKAVEASCI---------YRLKVCKENESDAAIEEVLDAHLEEL  119

Query  309  IEEARDELTLIGKMIEWDPWGVPDDYECXVIE  404
            I+EA++E  L+  +    PW VP DY   V++
Sbjct  120  IKEAKEEARLVPLIAGNAPWDVPADYAVPVVD  151


>gi|32488049|emb|CAE02862.1|  OSJNBa0014F04.28 [Oryza sativa (japonica cultivar-group)]
 gi|38345180|emb|CAE03336.2|  OSJNBb0005B05.3 [Oryza sativa (japonica cultivar-group)]
Length=1575

 Score = 32.0 bits (71),  Expect = 0.79
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   I 
Sbjct  124  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASIH  179

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  180  WSSYGVNPEYPTEV  193


>gi|116309142|emb|CAH66244.1|  OSIGBa0145C02.9 [Oryza sativa (indica cultivar-group)]
Length=1540

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  150  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  205

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  206  WSSYGVNPEYPTEV  219


>gi|108707599|gb|ABF95394.1|  transposon protein, putative, Mutator sub-class, expressed [Oryza 
sativa (japonica cultivar-group)]
Length=1688

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXVEELIEEARDELTLIGKMIEWD  362
            E EG +KG   L    +E  P +R  G+D V A+      EL++E  D    +   + W 
Sbjct  114  EGEGEKKGP-LLGNDLWEAGPSKRHCGSDDVDAAREMK-RELVQEGLDLSEHLSASVHWS  171

Query  363  PWGVPDDYECXV  398
             +GV  +Y   V
Sbjct  172  SYGVNPEYPTEV  183


>gi|108710242|gb|ABF98037.1|  Transposable element protein, putative, MuDR [Oryza sativa (japonica 
cultivar-group)]
Length=1099

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  153  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  208

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  209  WSSYGVNPEYPTEV  222


>gi|61656661|emb|CAI64479.1|  OSJNBa0032N05.16 [Oryza sativa (japonica cultivar-group)]
Length=2453

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183   EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
             E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  1192  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  1247

Query  357   WDPWGVPDDYECXV  398
             W  +GV  +Y   V
Sbjct  1248  WSSYGVNPEYPTEV  1261


>gi|41469590|gb|AAS07333.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=1038

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  153  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  208

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  209  WSSYGVNPEYPTEV  222


>gi|27476093|gb|AAO17024.1|  Putative retroelement [Oryza sativa (japonica cultivar-group)]
 gi|108705837|gb|ABF93632.1|  hypothetical protein LOC_Os03g02340 [Oryza sativa (japonica cultivar-group)]
Length=515

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  224  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  279

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  280  WSSYGVNPEYPTEV  293


>gi|77551876|gb|ABA94673.1|  transposon protein, putative, Mutator sub-class, expressed [Oryza 
sativa (japonica cultivar-group)]
Length=1155

 Score = 31.6 bits (70),  Expect = 1.0
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  345  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  400

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  401  WSSYGVNPEYPTEV  414


>gi|108710357|gb|ABF98152.1|  transposon protein, putative, Mutator sub-class [Oryza sativa 
(japonica cultivar-group)]
Length=1288

 Score = 30.8 bits (68),  Expect = 1.8
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXVEELIEEARDELTLIGKMIEWD  362
            E EG +K R  L    +E  P +R  G+D V A+      EL++E  D    +   + W 
Sbjct  98   EGEGEKK-RPLLGNDLWEAGPSKRHCGSDDVDAAREMK-RELVQEGLDLSEHLSVSVHWS  155

Query  363  PWGVPDDYECXV  398
             +GV  +Y   V
Sbjct  156  SYGVNPEYPTEV  167


>gi|40538931|gb|AAR87188.1|  putative  MuDR family transposase [Oryza sativa (japonica cultivar-group)]
Length=1403

 Score = 30.8 bits (68),  Expect = 1.8
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXVEELIEEARDELTLIGKMIEWD  362
            E EG +K R  L    +E  P +R  G+D V A+      EL++E  D    +   + W 
Sbjct  98   EGEGEKK-RPLLGNDLWEAGPSKRHCGSDDVDAAREMK-RELVQEGLDLSEHLSVSVHWS  155

Query  363  PWGVPDDYECXV  398
             +GV  +Y   V
Sbjct  156  SYGVNPEYPTEV  167


>gi|22655792|gb|AAN04209.1|  Putative retroelement [Oryza sativa (japonica cultivar-group)]
 gi|110288638|gb|ABG65916.1|  transposon protein, putative, Mutator sub-class [Oryza sativa 
(japonica cultivar-group)]
Length=1460

 Score = 30.8 bits (68),  Expect = 1.8
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   DAA V   EL++E  D    +   + 
Sbjct  229  EGEGEKK-RPLLGNDLWEAGPSKRYCGTDDV---DAARVMKRELVQEGLDLSEHLSASVH  284

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  285  WSSYGVNPEYPTEV  298


>gi|40253293|dbj|BAD05228.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|40253610|dbj|BAD05555.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=153

 Score = 30.8 bits (68),  Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 0/32 (0%)
 Frame = +1

Query  1    NSAPAPQNLTKKCSCD*SRRPLLAKVKEDDGD  96
            +++P   N  K C+CD SR+ L+A+V E  GD
Sbjct  73   HTSPCESNGKKGCACDRSRKSLVARVDELCGD  104


>gi|28269461|gb|AAO38004.1|  putative mutator-like transposase [Oryza sativa (japonica cultivar-group)]
 gi|108709640|gb|ABF97435.1|  transposon protein, putative, Mutator sub-class [Oryza sativa 
(japonica cultivar-group)]
Length=1360

 Score = 30.0 bits (66),  Expect = 3.0
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +3

Query  201  KGRGELHTPPF-----EGLPRRRRLGNDRVSASDAAXVEELIEEARDELTLIGKMIEWDP  365
            +G+GE   P F     E  P +R  G+D + A+      EL++E  D    + + + W  
Sbjct  149  EGKGEKKRPLFGNDLGEAGPSKRHCGSDDMDAAREMK-RELVQEGLDLSEYLSESVHWSS  207

Query  366  WGVPDDYECXV  398
            +G   +Y   V
Sbjct  208  YGGNPEYPTQV  218


>gi|21671916|gb|AAM74278.1|AC083943_18  Putative transposable element [Oryza sativa (japonica cultivar-group)]
 gi|31431964|gb|AAP53670.1|  transposon protein, putative, Mutator sub-class [Oryza sativa 
(japonica cultivar-group)]
Length=1592

 Score = 30.0 bits (66),  Expect = 3.0
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXVEELIEEARDELTLIGKMIEWD  362
            E EG +K R  L    +E  P +R  G D V A       EL++E  D    +   + W 
Sbjct  171  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDVDAVRVMK-RELVQEGLDLSEHLSASVHWS  228

Query  363  PWGVPDDYECXV  398
             +GV  +Y   V
Sbjct  229  SYGVNPEYPTEV  240


>gi|38345422|emb|CAD41543.2|  OSJNBb0091E11.13 [Oryza sativa (japonica cultivar-group)]
Length=1107

 Score = 30.0 bits (66),  Expect = 3.0
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = +3

Query  171  QAVPED-EGYR-KGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTL  338
            + V ED EG R K R  L    +E  P +R  G D V   DAA V   EL++E  D    
Sbjct  164  ELVREDLEGEREKKRPLLGNDLWEAGPSKRHCGTDDV---DAARVMKRELVQEGLDLSEH  220

Query  339  IGKMIEWDPWGVPDDYECXV  398
            +   + W  +GV   Y   V
Sbjct  221  LSASVHWSSYGVNPKYPTEV  240


>gi|77551154|gb|ABA93951.1|  Transposable element protein, putative, MuDR [Oryza sativa (japonica 
cultivar-group)]
Length=799

 Score = 29.3 bits (64),  Expect = 5.1
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R    D V   DAA V   EL++E  D    +   + 
Sbjct  114  EGEGEKK-RPLLGNDLWEAGPSKRHCSTDDV---DAARVMKRELVQEGLDLSEHLSASVH  169

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  170  WSSYGVNPEYPTEV  183


>gi|24796769|gb|AAN64446.1|  putative circumsporozoite protein [Oryza sativa (japonica cultivar-group)]
 gi|31126662|gb|AAP44585.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|108709257|gb|ABF97052.1|  hypothetical protein LOC_Os03g35620 [Oryza sativa (japonica cultivar-group)]
Length=380

 Score = 28.9 bits (63),  Expect = 6.7
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 0/31 (0%)
 Frame = +3

Query  234  EGLPRRRRLGNDRVSASDAAXVEELIEEARD  326
            EGLP+RRRL     +A   A +EE ++E+ D
Sbjct  288  EGLPKRRRLVAKTSAAKLTAKLEEALKESND  318


>gi|54291754|gb|AAV32123.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1242

 Score = 28.5 bits (62),  Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%)
 Frame = -2

Query  125  WRWGPRLIRRSPSSSFTFASNGRRDQSQEHFFVRF  21
            WR G RL RR+   SF+ ++N    Q+Q H   R+
Sbjct  170  WRKGLRLCRRNSKLSFSNSTNPTTFQAQPHRLTRW  204


>gi|49328188|gb|AAT58884.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
Length=1564

 Score = 28.5 bits (62),  Expect = 8.7
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query  183  EDEGYRKGRGELHTPPFEGLPRRRRLGNDRVSASDAAXV--EELIEEARDELTLIGKMIE  356
            E EG +K R  L    +E  P +R  G D V   D A V   EL++E  D    +     
Sbjct  281  EGEGEKK-RPLLGNDLWEAGPSKRHCGTDDV---DEARVMKRELVQEGLDLSEHLSASFH  336

Query  357  WDPWGVPDDYECXV  398
            W  +GV  +Y   V
Sbjct  337  WSSYGVNPEYPTEV  350

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 300
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 429
Length of database: 101054579
Length adjustment: 102
Effective length of query: 327
Effective length of database: 72152981
Effective search space: 2958272221
Effective search space used: 2958272221
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)