>gi|40233087|gb|AAR83341.1|  homeodomain protein HB2 [Populus tomentosa]
Length=257

 Score =  199 bits (506),  Expect = 5e-51
 Identities = 97/104 (93%), Positives = 100/104 (96%), Gaps = 0/104 (0%)
 Frame = +3

Query  210  MYVKVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGGRLGNLYCDPLMTSAGH  389
            +YVKVMTDEQLETLRKQIAVYA+ICEQLVEMHK L+AQQDLAGGRLGNLYCDPLM S GH
Sbjct  49   LYVKVMTDEQLETLRKQIAVYAAICEQLVEMHKTLSAQQDLAGGRLGNLYCDPLMASGGH  108

Query  390  KITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            KITARQRWTPTPVQLQILERIFDQG GTPSKQKIKEITSELSQH
Sbjct  109  KITARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQH  152


>gi|3955021|emb|CAA09367.1|  HB2 homeodomain protein [Populus tremula x Populus tremuloides]
Length=261

 Score =  199 bits (506),  Expect = 5e-51
 Identities = 97/104 (93%), Positives = 100/104 (96%), Gaps = 0/104 (0%)
 Frame = +3

Query  210  MYVKVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGGRLGNLYCDPLMTSAGH  389
            +YVKVMTDEQLETLRKQIAVYA+ICEQLVEMHK L+AQQDLAGGRLGNLYCDPLM S GH
Sbjct  53   LYVKVMTDEQLETLRKQIAVYAAICEQLVEMHKTLSAQQDLAGGRLGNLYCDPLMASGGH  112

Query  390  KITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            KITARQRWTPTPVQLQILERIFDQG GTPSKQKIKEITSELSQH
Sbjct  113  KITARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQH  156


>gi|15237035|ref|NP_195280.1|  DNA binding / transcription factor [Arabidopsis thaliana]
 gi|61217457|sp|O81788|WOX13_ARATH  WUSCHEL-related homeobox 13
 gi|3367573|emb|CAA20025.1|  homeodomain - like protein [Arabidopsis thaliana]
 gi|7270506|emb|CAB80271.1|  homeodomain-like protein [Arabidopsis thaliana]
 gi|15081751|gb|AAK82530.1|  AT4g35550/F8D20_60 [Arabidopsis thaliana]
 gi|23308275|gb|AAN18107.1|  At4g35550/F8D20_60 [Arabidopsis thaliana]
 gi|37955227|gb|AAP37142.1|  WOX13 protein [Arabidopsis thaliana]
Length=268

 Score =  187 bits (475),  Expect = 2e-47
 Identities = 89/104 (85%), Positives = 97/104 (93%), Gaps = 0/104 (0%)
 Frame = +3

Query  210  MYVKVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGGRLGNLYCDPLMTSAGH  389
            MYVKVMTDEQ ETLRKQIA+Y +ICE+LVEMHK LTAQQDLAGGR+G LY DP+M+S GH
Sbjct  33   MYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGH  92

Query  390  KITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            K+TARQRWTPTPVQLQILERIFDQGTGTPSKQKIK+IT ELSQH
Sbjct  93   KMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQH  136


>gi|115440703|ref|NP_001044631.1|  Os01g0818400 [Oryza sativa (japonica cultivar-group)]
 gi|56201899|dbj|BAD73349.1|  putative HB2 homeodomain protein [Oryza sativa (japonica cultivar-group)]
 gi|113534162|dbj|BAF06545.1|  Os01g0818400 [Oryza sativa (japonica cultivar-group)]
Length=267

 Score =  177 bits (450),  Expect = 1e-44
 Identities = 86/104 (82%), Positives = 95/104 (91%), Gaps = 1/104 (0%)
 Frame = +3

Query  213  YVKVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQD-LAGGRLGNLYCDPLMTSAGH  389
            YVKVMTDEQ+E LRKQI++YA+ICEQLVEMH+ LTAQQD +AG RLGNLYCDPLM   GH
Sbjct  26   YVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGH  85

Query  390  KITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            KITARQRWTPTP+QLQILE IFDQG GTPSKQKIK+IT+ELSQH
Sbjct  86   KITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQH  129


>gi|3955019|emb|CAA09366.1|  HB1 homeodomain protein [Populus tremula x Populus tremuloides]
Length=217

 Score =  153 bits (386),  Expect = 4e-37
 Identities = 74/102 (72%), Positives = 87/102 (85%), Gaps = 0/102 (0%)
 Frame = +3

Query  216  VKVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGGRLGNLYCDPLMTSAGHKI  395
            VKVMTDEQ+E LRKQI+VYA+ICEQLVEMHK ++AQQD AG  LGN YCDPL++SA HKI
Sbjct  14   VKVMTDEQMEMLRKQISVYATICEQLVEMHKAVSAQQDFAGMGLGNPYCDPLLSSAVHKI  73

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
             +RQRWTP P QLQILE+IF+Q   TP +QKIK+IT EL+QH
Sbjct  74   GSRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQH  115


>gi|40233067|gb|AAR83340.1|  homeodomain protein HB1 [Populus tomentosa]
 gi|40233103|gb|AAR83342.1|  homeodomain protein HB1 [Populus tomentosa]
Length=217

 Score =  151 bits (381),  Expect = 1e-36
 Identities = 73/101 (72%), Positives = 86/101 (85%), Gaps = 0/101 (0%)
 Frame = +3

Query  219  KVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGGRLGNLYCDPLMTSAGHKIT  398
            KVMTDEQ+E LRKQI+VYA+ICEQLVEMHK ++AQQD AG  LGN YCDPL++SA HKI 
Sbjct  15   KVMTDEQMEMLRKQISVYATICEQLVEMHKVVSAQQDFAGMGLGNPYCDPLLSSAVHKIG  74

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            +RQRWTP P QLQILE+IF+Q   TP +QKIK+IT EL+QH
Sbjct  75   SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQH  115


>gi|30686974|ref|NP_173493.2|  DNA binding / transcription factor [Arabidopsis thaliana]
 gi|61217651|sp|Q9LM84|WOX14_ARATH  WUSCHEL-related homeobox 14 (Homeodomain protein PALE-2) (AtPALE2)
 gi|8886930|gb|AAF80616.1|AC069251_9  F2D10.19 [Arabidopsis thaliana]
 gi|20152544|emb|CAD29665.1|  homeodomain protein PALE-2 [Arabidopsis thaliana]
Length=211

 Score =  112 bits (281),  Expect = 6e-25
 Identities = 56/105 (53%), Positives = 81/105 (77%), Gaps = 5/105 (4%)
 Frame = +3

Query  219  KVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGG---RLGNLYCDPL-MTSAG  386
            +VMT+EQ+E LRKQIAVYA IC+QLV +H +L++   L+ G    +G  Y DP+  +S+ 
Sbjct  29   RVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGG-YFDPMGASSSS  87

Query  387  HKITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            H+I+ R RWTPT  QLQILE I+D+G+GTP++++I+EI +ELS+H
Sbjct  88   HRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEH  132


>gi|15218015|ref|NP_173494.1|  DNA binding / transcription factor [Arabidopsis thaliana]
 gi|61217650|sp|Q9LM83|WOX10_ARATH  Putative WUSCHEL-related homeobox 10
 gi|8886931|gb|AAF80617.1|AC069251_10  F2D10.20 [Arabidopsis thaliana]
Length=197

 Score =  111 bits (277),  Expect = 2e-24
 Identities = 55/104 (52%), Positives = 79/104 (75%), Gaps = 3/104 (2%)
 Frame = +3

Query  219  KVMTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQDLAGGR--LGNLYCDPLM-TSAGH  389
            +VMTDEQ+ETLRKQIA+YA +C+QLV +H +L++   L+ G   +   Y DP++ +S+ H
Sbjct  13   RVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAH  72

Query  390  KITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
             ++ R RWTPT  QLQILE I+ +G+GTP+ ++IKEIT ELS+H
Sbjct  73   GMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEH  116


>gi|116811092|emb|CAJ84154.1|  WOX13 protein [Populus trichocarpa]
Length=65

 Score = 86.3 bits (212),  Expect = 6e-17
 Identities = 41/42 (97%), Positives = 41/42 (97%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            TARQRWTPTPVQLQILERIFDQG GTPSKQKIKEITSELSQH
Sbjct  1    TARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQH  42


>gi|116811078|emb|CAJ84147.1|  WOX13 protein [Oryza sativa]
Length=65

 Score = 80.9 bits (198),  Expect = 2e-15
 Identities = 37/42 (88%), Positives = 40/42 (95%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            TARQRWTPTP+QLQILE IFDQG GTPSKQKIK+IT+ELSQH
Sbjct  1    TARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQH  42


>gi|116811094|emb|CAJ84169.1|  WOX13B protein [Zea mays]
Length=65

 Score = 79.3 bits (194),  Expect = 7e-15
 Identities = 37/42 (88%), Positives = 39/42 (92%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            TARQRW PTP+QLQILE IFDQG GTPSKQKIKEIT+ELSQH
Sbjct  1    TARQRWQPTPMQLQILESIFDQGNGTPSKQKIKEITAELSQH  42


>gi|89330219|emb|CAJ84168.1|  WOX13A protein [Zea mays]
Length=65

 Score = 76.6 bits (187),  Expect = 5e-14
 Identities = 35/42 (83%), Positives = 38/42 (90%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            TARQRW PTP+QLQILE IFDQG GTPSKQ+IKEIT+ELS H
Sbjct  1    TARQRWQPTPMQLQILENIFDQGNGTPSKQRIKEITAELSHH  42


>gi|116061075|emb|CAL56463.1|  unnamed protein product [Ostreococcus tauri]
Length=203

 Score = 55.1 bits (131),  Expect = 1e-07
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 26/125 (20%)
 Frame = +3

Query  225  MTDEQLETLRKQIAVYASICEQLVEMHKNLTAQQ---------DLAGGRLGNLYCDPLMT  377
            MT+ QL   R+QIA YA IC+QL+++      QQ         ++ G    N      +T
Sbjct  50   MTERQLYAFRQQIAAYAHICQQLLQITTVSATQQTPRQREMRHEVPGATGANWGASVPVT  109

Query  378  --------SAGH---------KITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITS  506
                    S+ H         K     RWT TP Q +ILE +F +G   P + ++ E+T 
Sbjct  110  APASAPLSSSNHSSGKTRGEDKQARGPRWTGTPTQYEILEDLFQKGEQPPVRDRLTELTE  169

Query  507  ELSQH  521
             L QH
Sbjct  170  MLKQH  174


>gi|37909316|gb|AAP37133.1|  WOX1 protein [Arabidopsis thaliana]
Length=349

 Score = 47.4 bits (111),  Expect = 3e-05
 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 0/43 (0%)
 Frame = +3

Query  393  ITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            +    RW PTP QL++LE ++ QGT TPS   I++IT++L ++
Sbjct  71   VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRY  113


>gi|79406679|ref|NP_188428.2|  transcription factor [Arabidopsis thaliana]
Length=306

 Score = 47.4 bits (111),  Expect = 3e-05
 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 0/43 (0%)
 Frame = +3

Query  393  ITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            +    RW PTP QL++LE ++ QGT TPS   I++IT++L ++
Sbjct  27   VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRY  69


>gi|61217290|sp|Q6X7K0|WOX1_ARATH  WUSCHEL-related homeobox 1 (PFS2-like protein)
 gi|9294502|dbj|BAB02721.1|  homeodomain transcription factor-like protein [Arabidopsis thaliana]
Length=350

 Score = 47.4 bits (111),  Expect = 3e-05
 Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 0/43 (0%)
 Frame = +3

Query  393  ITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            +    RW PTP QL++LE ++ QGT TPS   I++IT++L ++
Sbjct  71   VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRY  113


>gi|115440959|ref|NP_001044759.1|  Os01g0840300 [Oryza sativa (japonica cultivar-group)]
 gi|21104626|dbj|BAB93218.1|  putative WOX2 protein [Oryza sativa (japonica cultivar-group)]
 gi|113534290|dbj|BAF06673.1|  Os01g0840300 [Oryza sativa (japonica cultivar-group)]
Length=313

 Score = 47.0 bits (110),  Expect = 4e-05
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
 Frame = +3

Query  336  GGRLGNLYCDPLM--------TSAGHKITARQRWTPTPVQLQILERIFDQGTGTPSKQKI  491
            GGR G  + DP           SA     A  RWTPT  Q+ +LE ++ QG  TP+ ++I
Sbjct  13   GGRAGG-FSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQI  71

Query  492  KEITSELSQH  521
            ++IT+ L +H
Sbjct  72   QQITARLREH  81


>gi|92872891|gb|ABE81423.1|  Homeodomain-related [Medicago truncatula]
Length=358

 Score = 45.8 bits (107),  Expect = 9e-05
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 0/40 (0%)
 Frame = +3

Query  393  ITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSEL  512
            +    RW PTP QL+ LE ++ +GT TPS ++I++IT++L
Sbjct  91   VVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQL  130


>gi|116811066|emb|CAJ84141.1|  WOX2 protein [Oryza sativa]
Length=65

 Score = 45.1 bits (105),  Expect = 1e-04
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 0/41 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            A  RWTPT  Q+ +LE ++ QG  TP+ ++I++IT+ L +H
Sbjct  2    ANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREH  42


>gi|116811080|emb|CAJ84148.1|  WOX1A protein [Populus trichocarpa]
Length=65

 Score = 45.1 bits (105),  Expect = 1e-04
 Identities = 18/38 (47%), Positives = 29/38 (76%), Gaps = 0/38 (0%)
 Frame = +3

Query  408  RWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            RW PTP QL+ LE ++ +GT TPS  +I++IT++L ++
Sbjct  5    RWNPTPEQLRTLEELYRRGTRTPSTDQIQDITAQLRRY  42


>gi|116811082|emb|CAJ84149.1|  WOX1B protein [Populus trichocarpa]
Length=65

 Score = 44.3 bits (103),  Expect = 3e-04
 Identities = 18/38 (47%), Positives = 29/38 (76%), Gaps = 0/38 (0%)
 Frame = +3

Query  408  RWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            RW PTP QL+ LE ++ +GT TPS  +I++IT++L ++
Sbjct  5    RWNPTPEQLRTLEDLYRRGTRTPSTDQIQDITAQLRRY  42


>gi|89330201|emb|CAJ84159.1|  WOX2A protein [Zea mays]
Length=65

 Score = 43.1 bits (100),  Expect = 6e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 0/41 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            A  RW PT  Q+ +LE +++ G  TPS ++I++IT  L +H
Sbjct  2    ANARWNPTKEQVAVLEGLYEHGLRTPSAEQIQQITGRLREH  42


>gi|116831042|gb|ABK28476.1|  unknown [Arabidopsis thaliana]
Length=272

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 0/41 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            A  RW PTP Q+  LE ++  GT TP+ ++I++I S+L ++
Sbjct  58   ATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKY  98


>gi|116811064|emb|CAJ84140.1|  NS protein [Oryza sativa]
Length=65

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            T   RW PTP QL ILE ++  G  TP+  +I++IT+ L+ +
Sbjct  1    TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYY  42


>gi|77548299|gb|ABA91096.1|  Homeobox domain containing protein [Oryza sativa (japonica cultivar-group)]
 gi|77552774|gb|ABA95570.1|  Homeobox domain containing protein [Oryza sativa (japonica cultivar-group)]
 gi|81686872|dbj|BAE48302.1|  OsWOX3 protein [Oryza sativa (japonica cultivar-group)]
Length=203

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            T   RW PTP QL ILE ++  G  TP+  +I++IT+ L+ +
Sbjct  4    TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYY  45


>gi|61217580|sp|Q70UV1|WOX3A_MAIZE  WUSCHEL-related homeobox 3A (Narrow sheath protein 1)
 gi|46917143|emb|CAD60454.1|  homeodomain transcription factor [Zea mays]
Length=262

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            T   RW PTP QL ILE ++  G  TP+  +I++IT+ L+ +
Sbjct  4    TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYY  45


>gi|61217577|sp|Q6S3I3|WOX3B_MAIZE  WUSCHEL-related homeobox 3B (Narrow sheath protein 2)
 gi|39841615|gb|AAR31211.1|  narrow sheath 2 [Zea mays]
 gi|39841617|gb|AAR31212.1|  narrow sheath 2 [Zea mays]
Length=265

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            T   RW PTP QL ILE ++  G  TP+  +I++IT+ L+ +
Sbjct  4    TPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYY  45


>gi|18379236|ref|NP_565263.1|  PFS2 (PRETTY FEW SEEDS 2); transcription factor [Arabidopsis 
thaliana]
 gi|61217449|sp|Q9ZVF5|WOX6_ARATH  WUSCHEL-related homeobox 6 (Protein PRETTY FEW SEEDS2)
 gi|20197404|gb|AAC67326.2|  putative homeodomain transcription factor [Arabidopsis thaliana]
 gi|21553966|gb|AAM63047.1|  putative homeodomain transcription factor [Arabidopsis thaliana]
 gi|40889020|gb|AAP37137.2|  WOX6 protein [Arabidopsis thaliana]
 gi|58429113|gb|AAW78002.1|  pretty few seeds 2 [Arabidopsis thaliana]
 gi|91806125|gb|ABE65791.1|  homeobox-leucine zipper transcription factor family protein [Arabidopsis 
thaliana]
Length=271

 Score = 42.0 bits (97),  Expect = 0.001
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 0/41 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            A  RW PTP Q+  LE ++  GT TP+ ++I++I S+L ++
Sbjct  58   ATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKY  98


>gi|2253582|gb|AAC69146.1|  putative homeodomain transcription factor [Arabidopsis thaliana]
Length=321

 Score = 41.6 bits (96),  Expect = 0.002
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 13/65 (20%)
 Frame = +3

Query  366  PLMTSAGHKITA-------------RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITS  506
            PL+ SA H+ +              + RW P P Q++ILE IF+ G   P +++I+ I +
Sbjct  28   PLLPSASHRSSPFSSGCEVERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRA  87

Query  507  ELSQH  521
            +L ++
Sbjct  88   QLQEY  92


>gi|30685885|ref|NP_180944.2|  WOX9 (STIMPY); transcription factor [Arabidopsis thaliana]
 gi|61217281|sp|Q6X7J4|WOX9_ARATH  WUSCHEL-related homeobox 9
 gi|37955182|gb|AAP37139.1|  WOX9 protein [Arabidopsis thaliana]
Length=378

 Score = 41.6 bits (96),  Expect = 0.002
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 13/65 (20%)
 Frame = +3

Query  366  PLMTSAGHKITA-------------RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITS  506
            PL+ SA H+ +              + RW P P Q++ILE IF+ G   P +++I+ I +
Sbjct  28   PLLPSASHRSSPFSSGCEVERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRA  87

Query  507  ELSQH  521
            +L ++
Sbjct  88   QLQEY  92


>gi|110321612|emb|CAL18267.1|  homeodomain transcription factor [Picea abies]
Length=201

 Score = 41.2 bits (95),  Expect = 0.002
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            T   RW PT  Q+++LE ++ QG  TPS  +I++I S L  +
Sbjct  7    TMSTRWNPTKEQIELLEAMYSQGIRTPSADQIEQIASRLGMY  48


>gi|116831125|gb|ABK28517.1|  unknown [Arabidopsis thaliana]
Length=245

 Score = 40.8 bits (94),  Expect = 0.003
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELS  515
            A  RW PTP QL ILE ++  G  TP+  +I++IT+ L+
Sbjct  5    ASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLA  43


>gi|15226914|ref|NP_180429.1|  PRS (PRESSED FLOWER); transcription factor [Arabidopsis thaliana]
 gi|61217434|sp|Q9SIB4|WOX3_ARATH  WUSCHEL-related homeobox 3 (Protein PRESSED FLOWER)
 gi|4580396|gb|AAD24374.1|  putative homeodomain transcription factor [Arabidopsis thaliana]
 gi|17907768|dbj|BAB79446.1|  PRESSED FLOWER [Arabidopsis thaliana]
 gi|37954308|gb|AAP37135.1|  PRS/WOX3 protein [Arabidopsis thaliana]
 gi|91806283|gb|ABE65869.1|  homeobox-leucine zipper transcription factor [Arabidopsis thaliana]
Length=244

 Score = 40.8 bits (94),  Expect = 0.003
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 0/39 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELS  515
            A  RW PTP QL ILE ++  G  TP+  +I++IT+ L+
Sbjct  5    ASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLA  43


>gi|116811086|emb|CAJ84151.1|  WOX4 protein [Populus trichocarpa]
Length=65

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 0/38 (0%)
 Frame = +3

Query  408  RWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            RW PT  Q+ ILE ++  G  TP+ Q+I++IT++LS++
Sbjct  5    RWNPTQEQIGILEMLYRGGMRTPNGQQIEDITAQLSRY  42


>gi|55168346|gb|AAV44211.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=286

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +3

Query  321  QQDLAGGRLGNLYCDPLMTSAGHKITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEI  500
            QQ  +GG  G+        +    + +  RW PTP QL +LE ++  G  TP+  +I++I
Sbjct  6    QQQQSGGGGGS--------TGAAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQI  57

Query  501  TSELSQH  521
            T+ LS +
Sbjct  58   TAHLSTY  64


>gi|8099120|dbj|BAA90492.1|  unnamed protein product [Oryza sativa]
Length=275

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +3

Query  321  QQDLAGGRLGNLYCDPLMTSAGHKITARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEI  500
            QQ  +GG  G+        +    + +  RW PTP QL +LE ++  G  TP+  +I++I
Sbjct  6    QQQQSGGGGGS--------TGAAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQI  57

Query  501  TSELSQH  521
            T+ LS +
Sbjct  58   TAHLSTY  64


>gi|92888902|gb|ABE89615.1|  Homeobox domain, putative [Medicago truncatula]
Length=236

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 0/38 (0%)
 Frame = +3

Query  408  RWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            RW PT  Q+ ILE ++  G  TP+ Q+I++IT +LS++
Sbjct  90   RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKY  127


>gi|79530393|ref|NP_199410.2|  WOX8; DNA binding / transcription factor [Arabidopsis thaliana]
 gi|61217284|sp|Q6X7J5|WOX8_ARATH  WUSCHEL-related homeobox 8
 gi|37955180|gb|AAP37138.1|  WOX8 protein [Arabidopsis thaliana]
Length=325

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
 Frame = +3

Query  402  RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            + RW P P Q++ILE IF+ GT  P +++I+ I   L ++
Sbjct  53   KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEY  92


>gi|9757718|dbj|BAB08243.1|  unnamed protein product [Arabidopsis thaliana]
Length=253

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
 Frame = +3

Query  402  RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            + RW P P Q++ILE IF+ GT  P +++I+ I   L ++
Sbjct  53   KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEY  92


>gi|116811084|emb|CAJ84150.1|  WOX2 protein [Populus trichocarpa]
Length=65

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 0/42 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            +   RW+PT  Q+ +LE  + QG  TPS + I++I S L  +
Sbjct  1    SVNSRWSPTKEQISMLESFYSQGIRTPSTEMIEQIASRLKAY  42


>gi|116811096|emb|CAJ84170.1|  WOX2B protein [Zea mays]
Length=69

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 0/41 (0%)
 Frame = +3

Query  399  ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            A  RW PT  Q+ +LE +++ G  +PS ++I++I   L +H
Sbjct  2    AAARWNPTKEQVAVLEGLYEHGLRSPSAEQIQQIADRLREH  42


>gi|89330203|emb|CAJ84160.1|  WOX4 protein [Zea mays]
Length=65

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 0/38 (0%)
 Frame = +3

Query  408  RWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            RW P+P Q+++LE ++  G  TP+  +I++IT EL ++
Sbjct  5    RWNPSPDQIRVLEMLYRGGMRTPNSFQIEQITEELGKY  42


>gi|89330213|emb|CAJ84165.1|  WOX9C protein [Zea mays]
Length=65

 Score = 38.9 bits (89),  Expect = 0.011
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 0/40 (0%)
 Frame = +3

Query  402  RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            R RW P P Q++ILE IF+ G   P + +I+ I  +L ++
Sbjct  3    RPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEY  42


>gi|116811056|emb|CAJ84136.1|  WUS1 protein [Zea mays]
Length=312

 Score = 38.5 bits (88),  Expect = 0.014
 Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = +3

Query  408  RWTPTPVQLQILERI-FDQGTGTPSKQKIKEITSELSQH  521
            RWTPTP Q++IL+ + +  G  +P+ ++I+ IT+ L QH
Sbjct  40   RWTPTPEQIRILKELYYGCGIRSPNSEQIQRITAMLRQH  78


>gi|116811058|emb|CAJ84137.1|  WUS2 protein [Zea mays]
Length=325

 Score = 38.5 bits (88),  Expect = 0.014
 Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = +3

Query  408  RWTPTPVQLQILERI-FDQGTGTPSKQKIKEITSELSQH  521
            RWTPTP Q+++L+ + +  G  +PS ++I+ IT+ L QH
Sbjct  31   RWTPTPEQIRMLKELYYGCGIRSPSSEQIQRITAMLRQH  69


>gi|83853807|gb|ABC47840.1|  WOX4 protein [Glycine max]
Length=188

 Score = 38.5 bits (88),  Expect = 0.014
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 0/38 (0%)
 Frame = +3

Query  408  RWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            RW PT  Q+ ILE ++  G  TP+ Q+I++IT +L ++
Sbjct  49   RWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKY  86


>gi|116811090|emb|CAJ84153.1|  WOX9 protein [Populus trichocarpa]
Length=65

 Score = 38.1 bits (87),  Expect = 0.018
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
 Frame = +3

Query  402  RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            + RW P P Q++ILE IF+ G   P + +I++I  +L ++
Sbjct  3    KPRWNPKPDQIRILEAIFNSGMVNPPRDEIRKIRVQLQEY  42


>gi|116811088|emb|CAJ84152.1|  WOX6 protein [Populus trichocarpa]
Length=65

 Score = 37.7 bits (86),  Expect = 0.024
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 0/39 (0%)
 Frame = +3

Query  396  TARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSEL  512
            T   RW PT  QL  LE  +  G  TP+  +I++ITSEL
Sbjct  1    TRSSRWNPTAEQLLALEEKYSCGVRTPTTNQIQQITSEL  39


>gi|116811074|emb|CAJ84145.1|  WOX9C protein [Oryza sativa]
Length=65

 Score = 37.7 bits (86),  Expect = 0.024
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 0/40 (0%)
 Frame = +3

Query  402  RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            + RW P P Q++ILE IF+ G   P + +I+ I  +L ++
Sbjct  3    KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEY  42


>gi|50511480|gb|AAT77402.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=821

 Score = 37.7 bits (86),  Expect = 0.024
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 0/40 (0%)
 Frame = +3

Query  402  RQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQH  521
            + RW P P Q++ILE IF+ G   P + +I+ I  +L ++
Sbjct  70   KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEY  109