RID=1168937317-15614-109631962337.BLASTQ4, Contig99

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168937317-15614-109631962337.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

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Score E Sequences producing significant alignments: (Bits) Value gi|87241054|gb|ABD32912.1| Ferric reductase-like transmembran... 30.8 1.5 gi|92891658|gb|ABE90922.1| hypothetical protein MtrDRAFT_AC14... 28.9 5.6 gi|42573261|ref|NP_974727.1| unknown protein [Arabidopsis thalia 28.1 9.5

Alignments

 

>gi|87241054|gb|ABD32912.1|  Ferric reductase-like transmembrane component [Medicago truncatula]
 gi|92897562|gb|ABE93728.1|  Ferric reductase-like transmembrane component [Medicago truncatula]
Length=740

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query  205  NALGIRILFLLLDIY-IGRLLFVLPYYNGAMLCVCNLMSI*VYSG  336
            + LG  IL  LL+IY I  +  V+ +Y G +L VC + S+ ++ G
Sbjct  582  STLGFVILLALLNIYYINPVGVVIWWYKGLLLVVCMVASVVIFGG  626


>gi|92891658|gb|ABE90922.1|  hypothetical protein MtrDRAFT_AC146566g31v1 [Medicago truncatula]
Length=66

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query  80   TVTAAED---EIAPSPAIETGTGCAAFASVAGVGSCVLFYVIHVLMH  211
            TV +A+D    +AP+P  + G   +  +SVA +G  V+  +I +  H
Sbjct  20   TVASAQDLSPSLAPAPGSDAGVAGSVTSSVAMIGVSVVLSMIAIFKH  66


>gi|42573261|ref|NP_974727.1|  unknown protein [Arabidopsis thaliana]
Length=97

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
 Frame = -1

Query  157  RCKRSAACSSFNCRRGSYLILSSSH  83
            RCK  A C S  CR G+++I +  H
Sbjct  27   RCKSVAECDSRGCRVGTHVICNEHH  51

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 160 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 349 Length of database: 101054579 Length adjustment: 84 Effective length of query: 265 Effective length of database: 77253263 Effective search space: 2472104416 Effective search space used: 2472104416 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 3 Blast Hits on the Query Sequence