Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169013433-11539-24882838028.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig353 Length=539
Score E Sequences producing significant alignments: (Bits) Value gi|115437444|ref|NP_001043297.1| Os01g0549700 [Oryza sativa (... 153 4e-37 gi|57899406|dbj|BAD88053.1| putative HLA-B associated transcr... 153 4e-37 gi|115437448|ref|NP_001043298.1| Os01g0550000 [Oryza sativa (... 153 4e-37 gi|62319895|dbj|BAD93957.1| DEAD BOX RNA helicase RH15 - like... 152 9e-37 gi|3776005|emb|CAA09205.1| RNA helicase [Arabidopsis thaliana] 152 9e-37 gi|18416493|ref|NP_568245.1| ATP binding / ATP-dependent heli... 152 9e-37 gi|30683509|ref|NP_850807.1| ATP binding / ATP-dependent heli... 152 9e-37 gi|18416486|ref|NP_568244.1| ATP binding / ATP-dependent heli... 152 9e-37 gi|8953379|emb|CAB96652.1| DEAD BOX RNA helicase RH15-like prote 145 7e-35 gi|8953382|emb|CAB96655.1| DEAD BOX RNA helicase RH15 [Arabidops 145 7e-35 gi|92893059|gb|ABE91573.1| Helicase, C-terminal [Medicago trunca 144 2e-34 gi|92890274|gb|ABE90288.1| Helicase conserved C-terminal doma... 144 2e-34 gi|92886790|gb|ABE88484.1| Helicase, C-terminal [Medicago trunca 144 2e-34 gi|116054817|emb|CAL56894.1| ATP-dependent RNA helicase (ISS) [O 105 1e-22 gi|115459616|ref|NP_001053408.1| Os04g0533000 [Oryza sativa (... 77.8 2e-14 gi|2500517|sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor... 77.0 4e-14 gi|1170511|sp|P41382|IF410_TOBAC Eukaryotic initiation factor... 77.0 4e-14 gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthu 76.6 5e-14 gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativ... 76.6 5e-14 gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza sativa 76.6 5e-14 gi|115447545|ref|NP_001047552.1| Os02g0641800 [Oryza sativa (... 76.6 5e-14 gi|1170508|sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor... 76.3 6e-14 gi|110289358|gb|ABG66172.1| ATP-dependent RNA helicase ste13,... 75.9 8e-14 gi|92872732|gb|ABE81297.1| Helicase, C-terminal [Medicago tru... 75.9 8e-14 gi|22328183|ref|NP_191975.2| ATP binding / ATP-dependent heli... 75.9 8e-14 gi|115482814|ref|NP_001065000.1| Os10g0503700 [Oryza sativa (... 75.9 8e-14 gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana] 75.9 8e-14 gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA helica... 75.9 8e-14 gi|116058281|emb|CAL53470.1| Predicted ATP-dependent RNA heli... 75.5 1e-13 gi|62319454|dbj|BAD94818.1| RNA helicase [Arabidopsis thaliana] 75.5 1e-13 gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis th... 75.5 1e-13 gi|15230945|ref|NP_188610.1| ATP binding / ATP-dependent heli... 75.5 1e-13 gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa (... 75.5 1e-13 gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana... 75.5 1e-13 gi|2500516|sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor... 75.5 1e-13 gi|2500520|sp|Q40467|IF414_TOBAC Eukaryotic initiation factor... 75.5 1e-13 gi|74272713|gb|ABA01152.1| eukaryotic translation initiation ... 75.1 1e-13 gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum 75.1 1e-13 gi|15010552|gb|AAK74073.1| eukaryotic translation initiation fac 75.1 1e-13 gi|28628026|gb|AAO17729.1| translation initition factor eIF4A... 75.1 1e-13 gi|2500521|sp|Q40468|IF415_TOBAC Eukaryotic initiation factor... 75.1 1e-13 gi|2500522|sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor ... 75.1 1e-13 gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum] 74.7 2e-13 gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea] 74.7 2e-13 gi|4454799|gb|AAD20980.1| translation initiation factor 4A2 [Zea 74.7 2e-13 gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa (... 74.7 2e-13 gi|1170507|sp|P41380|IF4A3_NICPL Eukaryotic initiation factor... 74.7 2e-13 gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Or... 74.7 2e-13 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea may 74.3 2e-13 gi|2500515|sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor... 74.3 2e-13 gi|92877733|gb|ABE84720.1| Helicase, C-terminal [Medicago trunca 73.9 3e-13 gi|92877732|gb|ABE84719.1| Helicase, C-terminal [Medicago trunca 73.9 3e-13 gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis ini... 73.6 4e-13 gi|92877736|gb|ABE84723.1| Helicase, C-terminal [Medicago trunca 73.6 4e-13 gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A 73.6 4e-13 gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana] 73.6 4e-13 gi|15218574|ref|NP_177417.1| ATP binding / ATP-dependent heli... 73.6 4e-13 gi|19698881|gb|AAL91176.1| eukaryotic translation initiation fac 73.6 4e-13 gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, p... 73.6 4e-13 gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase ... 73.6 4e-13 gi|18400210|ref|NP_566469.1| EIF4A1; ATP-dependent helicase [... 73.6 4e-13 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A 73.2 5e-13 gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa (... 72.8 7e-13 gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa (... 72.8 7e-13 gi|1170509|sp|P41378|IF4A_WHEAT Eukaryotic initiation factor ... 72.8 7e-13 gi|15233064|ref|NP_191683.1| ATP binding / ATP-dependent heli... 72.4 9e-13 gi|3776001|emb|CAA09203.1| RNA helicase [Arabidopsis thaliana] 72.4 9e-13 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays] 72.4 9e-13 gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Penn 72.4 9e-13 gi|1170506|sp|P41379|IF4A2_NICPL Eukaryotic initiation factor... 72.4 9e-13 gi|2500518|sp|Q40465|IF411_TOBAC Eukaryotic initiation factor... 72.4 9e-13 gi|15225898|ref|NP_182105.1| ATP binding / ATP-dependent heli... 71.6 2e-12 gi|3775991|emb|CAA09198.1| RNA helicase [Arabidopsis thaliana] 71.6 2e-12 gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein ... 71.6 2e-12 gi|14532476|gb|AAK63966.1| At2g45810/F4I18.21 [Arabidopsis th... 71.6 2e-12 gi|15223841|ref|NP_175549.1| ATP binding / ATP-dependent heli... 71.6 2e-12 gi|116060920|emb|CAL57398.1| ATP-dependent RNA helicase (ISS) [O 70.9 3e-12 gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [... 69.7 6e-12 gi|116058195|emb|CAL53384.1| Predicted ATP-dependent RNA heli... 66.2 7e-11 gi|79313227|ref|NP_001030693.1| EIF4A1; ATP-dependent helicase [ 63.5 4e-10 gi|15231748|ref|NP_190879.1| LOS4; ATP-dependent helicase [Ar... 62.8 7e-10 gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa (... 60.8 3e-09 gi|116058835|emb|CAL54542.1| ATP-dependent RNA helicase (ISS) [O 60.5 4e-09 gi|115450839|ref|NP_001049020.1| Os03g0158200 [Oryza sativa (... 60.1 5e-09 gi|22773229|gb|AAN06835.1| Putative DEAD/DEAH box RNA helicas... 60.1 5e-09 gi|15982881|gb|AAL09787.1| AT3g53110/T4D2_40 [Arabidopsis thalia 59.7 6e-09 gi|116060093|emb|CAL56152.1| ATP-dependent RNA helicase (ISS) [O 59.3 8e-09 gi|92868239|gb|ABE78310.1| Helicase, C-terminal; Type III res... 59.3 8e-09 gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arab 58.9 1e-08 gi|22330935|ref|NP_187583.2| ATP binding / ATP-dependent heli... 58.9 1e-08 gi|115435080|ref|NP_001042298.1| Os01g0197200 [Oryza sativa (... 58.9 1e-08 gi|1169228|sp|P46942|DB10_NICSY ATP-dependent RNA helicase-li... 58.5 1e-08 gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa (... 58.2 2e-08 gi|15232722|ref|NP_187573.1| ATP binding / ATP-dependent heli... 58.2 2e-08 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Os 57.8 2e-08 gi|33772119|gb|AAQ54496.1| translation initiation factor eIF-4A 57.8 2e-08 gi|15218071|ref|NP_173516.1| ATP binding / ATP-dependent heli... 57.8 2e-08 gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa (... 57.8 2e-08 gi|25083096|gb|AAN72041.1| putative RNA helicase [Arabidopsis th 57.4 3e-08 gi|5669638|gb|AAD46404.1|AF096248_1 ethylene-responsive RNA heli 57.0 4e-08
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 355 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 539 Length of database: 101065385 Length adjustment: 106 Effective length of query: 433 Effective length of database: 71025303 Effective search space: 5184847119 Effective search space used: 5184847119 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)
