Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169013793-30190-10230957151.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig358 Length=572
Score E Sequences producing significant alignments: (Bits) Value gi|18417634|ref|NP_567849.1| ubiquitin-protein ligase [Arabid... 165 3e-50 gi|92868841|gb|ABE78800.1| Cyclin-like F-box [Medicago truncatul 147 1e-47 gi|18424042|ref|NP_568870.1| SKIP1 (SKP1 INTERACTING PARTNER ... 148 1e-47 gi|37805883|dbj|BAC99611.1| putative SKP1 interacting partner... 101 5e-26 gi|92868840|gb|ABE78799.1| SKP1 interacting partner 1-related [M 42.7 7e-08 gi|15229043|ref|NP_190457.1| unknown protein [Arabidopsis tha... 53.9 4e-07 gi|5732066|gb|AAD48965.1|AF147263_7 contains similarity to Me... 52.0 1e-06 gi|3273101|emb|CAA76808.1| N7 protein [Medicago truncatula] 50.1 6e-06 gi|21618163|gb|AAM67213.1| unknown [Arabidopsis thaliana] 48.9 1e-05 gi|7267308|emb|CAB81090.1| N7-like protein [Arabidopsis thaliana 43.1 7e-04 gi|18412949|ref|NP_567295.1| ubiquitin-protein ligase [Arabidops 43.1 7e-04 gi|18413178|ref|NP_567343.1| ubiquitin-protein ligase [Arabid... 35.8 7e-04 gi|115454265|ref|NP_001050733.1| Os03g0638900 [Oryza sativa (... 42.7 9e-04 gi|115482802|ref|NP_001064994.1| Os10g0502900 [Oryza sativa (... 42.7 9e-04 gi|21593361|gb|AAM65310.1| F-box protein family, AtFBL20 [Arabid 42.4 0.001 gi|18412947|ref|NP_567294.1| ubiquitin-protein ligase [Arabid... 42.4 0.001 gi|30692594|ref|NP_849530.1| unknown protein [Arabidopsis tha... 38.9 0.002 gi|7267307|emb|CAB81089.1| N7-like protein [Arabidopsis thaliana 38.5 0.017 gi|51090940|dbj|BAD35544.1| putative F-box protein Fbl2 [Oryz... 38.5 0.017 gi|108862944|gb|ABA99360.2| F-box domain containing protein, ... 37.4 0.037 gi|115475640|ref|NP_001061416.1| Os08g0269800 [Oryza sativa (... 36.2 0.083 gi|92873243|gb|ABE81734.1| Cyclin-like F-box [Medicago trunca... 36.2 0.083 gi|18414458|ref|NP_567467.1| ubiquitin-protein ligase [Arabid... 29.6 0.085 gi|87240622|gb|ABD32480.1| Cyclin-like F-box [Medicago truncatul 35.8 0.11 gi|115445787|ref|NP_001046673.1| Os02g0317500 [Oryza sativa (... 35.8 0.11 gi|40253645|dbj|BAD05588.1| F-box protein-like [Oryza sativa ... 35.4 0.14 gi|115444885|ref|NP_001046222.1| Os02g0200900 [Oryza sativa (... 34.3 0.32 gi|46390385|dbj|BAD15849.1| putative F-box protein [Oryza sativa 34.3 0.32 gi|38637149|dbj|BAD03402.1| hypothetical protein [Oryza sativa ( 34.3 0.32 gi|40253666|dbj|BAD05609.1| putative N7 protein [Oryza sativa (j 32.7 0.92 gi|38637143|dbj|BAD03396.1| F-box protein family-like [Oryza ... 32.7 0.92 gi|21536497|gb|AAM60829.1| F-box protein family, AtFBL4 [Arabido 29.6 1.1 gi|115475167|ref|NP_001061180.1| Os08g0193500 [Oryza sativa (... 32.3 1.2 gi|115445783|ref|NP_001046671.1| Os02g0317300 [Oryza sativa (... 32.0 1.6 gi|92890264|gb|ABE90278.1| Leucine Rich Repeat, putative [Med... 26.9 1.7 gi|18412951|ref|NP_567296.1| ubiquitin-protein ligase [Arabid... 31.6 2.0 gi|92879367|gb|ABE85496.1| Cyclin-like F-box [Medicago truncatul 31.2 2.7 gi|18421172|ref|NP_568502.1| ubiquitin-protein ligase [Arabid... 31.2 2.7 gi|82734614|gb|ABB89717.1| EIN3-binding F-box protein 1 [Sola... 30.8 3.5 gi|115486379|ref|NP_001068333.1| Os11g0637300 [Oryza sativa (... 30.8 3.5 gi|15222749|ref|NP_175955.1| unknown protein [Arabidopsis tha... 30.8 3.5 gi|38637157|dbj|BAD03410.1| hypothetical protein [Oryza sativ... 30.8 3.5 gi|13619398|emb|CAC36384.1| hypothetical protein [Arabidopsis th 30.8 3.5 gi|115464113|ref|NP_001055656.1| Os05g0437900 [Oryza sativa (... 30.4 4.6 gi|31249728|gb|AAP46221.1| hypothetical protein [Oryza sativa (j 30.4 4.6 gi|5817396|gb|AAD52732.1|AF123674_1 NADH dehydrogenase [Amphiant 30.4 4.6 gi|18412177|ref|NP_567255.1| GRH1 (GRR1-LIKE PROTEIN 1); ubiq... 30.4 4.6 gi|15027885|gb|AAK76473.1| putative F-box protein GRR1 protei... 30.4 4.6 gi|12658970|gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabid 30.4 4.6 gi|18396373|ref|NP_564288.1| alpha-mannosidase/ calcium ion b... 30.0 5.9 gi|40253664|dbj|BAD05607.1| putative N7 protein [Oryza sativa (j 30.0 5.9 gi|15239399|ref|NP_197917.1| EBF2 (EIN3-BINDING F BOX PROTEIN... 30.0 5.9 gi|30679379|ref|NP_568094.2| ubiquitin-protein ligase [Arabid... 25.0 6.1 gi|7327831|emb|CAB82288.1| putative protein [Arabidopsis thalian 25.0 6.1 gi|116061755|emb|CAL52473.1| unnamed protein product [Ostreococc 29.6 7.8 gi|110288610|gb|AAP52122.2| F-box domain containing protein, ... 29.6 7.8 gi|115441261|ref|NP_001044910.1| Os01g0866800 [Oryza sativa (... 29.6 7.8 gi|15209151|gb|AAK91884.1|AC091665_10 Putative leucine-rich repe 29.6 7.8 gi|40253675|dbj|BAD05618.1| F-box protein-like [Oryza sativa (ja 29.6 7.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 339 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 572 Length of database: 101065385 Length adjustment: 107 Effective length of query: 465 Effective length of database: 70741906 Effective search space: 5871578198 Effective search space used: 5871578198 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)