Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169014152-12778-29675039430.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig364 Length=523
Score E Sequences producing significant alignments: (Bits) Value gi|8928411|sp|Q39697|TBB2_DAUCA Tubulin beta-2 chain (Beta-2 ... 309 3e-90 gi|464851|sp|P33631|TBB2_ANEPH Tubulin beta-2 chain (Beta-2 t... 296 3e-86 gi|40036995|gb|AAR37366.1| beta-tubulin [Nicotiana attenuata] 310 2e-84 gi|77999243|gb|ABB16968.1| beta-tubulin-like protein [Solanum tu 310 2e-84 gi|77963735|gb|ABB13293.1| beta-tubulin [Lycopersicon esculentum 310 2e-84 gi|54036489|sp|Q6VAF6|TBB6_GOSHI Tubulin beta-6 chain (Beta-6... 310 2e-84 gi|78210838|dbj|BAE47135.1| beta tubulin like protein [Pyrus pyr 309 3e-84 gi|8928424|sp|Q9ZPN8|TBB3_ELEIN Tubulin beta-3 chain (Beta-3 ... 309 3e-84 gi|37038179|gb|AAQ88113.1| beta-tubulin 6 [Physcomitrella patens 309 4e-84 gi|37038246|gb|AAQ88118.1| beta-tubulin 5 [Physcomitrella patens 309 4e-84 gi|37038205|gb|AAQ88115.1| beta-tubulin 2 [Physcomitrella patens 309 4e-84 gi|37038217|gb|AAQ88116.1| beta-tubulin 3 [Physcomitrella patens 309 4e-84 gi|37038193|gb|AAQ88114.1| beta-tubulin 1 [Physcomitrella patens 309 4e-84 gi|92872824|gb|ABE81376.1| Cell division protein FtsZ [Medicago 308 6e-84 gi|3915083|sp|Q39445|TBB_CICAR Tubulin beta chain (Beta tubul... 308 6e-84 gi|135460|sp|P18026|TBB2_MAIZE Tubulin beta-2 chain (Beta-2 t... 308 6e-84 gi|51988176|emb|CAE52516.1| beta tubulin [Setaria viridis] 308 9e-84 gi|460991|emb|CAA55022.1| beta tubulin [Oryza sativa (japonica c 308 9e-84 gi|310317|gb|AAA66495.1| beta-tubulin 308 9e-84 gi|1174595|sp|P46263|TBB1_SOLTU Tubulin beta-1 chain (Beta-1 ... 308 9e-84 gi|1076737|pir||JC2510 beta-tubulin R1623 - rice 308 9e-84 gi|115436006|ref|NP_001042761.1| Os01g0282800 [Oryza sativa (... 308 9e-84 gi|8928425|sp|Q9ZPN9|TBB2_ELEIN Tubulin beta-2 chain (Beta-2 ... 308 9e-84 gi|1351202|sp|P28551|TBB3_SOYBN Tubulin beta chain (Beta tubu... 308 9e-84 gi|8928416|sp|Q41785|TBB8_MAIZE Tubulin beta-8 chain (Beta-8 ... 308 9e-84 gi|1174599|sp|P46264|TBB2_SOLTU Tubulin beta-2 chain (Beta-2 ... 308 9e-84 gi|8928414|sp|Q41783|TBB6_MAIZE Tubulin beta-6 chain (Beta-6 ... 308 9e-84 gi|8928423|sp|Q9ZPN7|TBB4_ELEIN Tubulin beta-4 chain (Beta-4 ... 308 9e-84 gi|115440571|ref|NP_001044565.1| Os01g0805900 [Oryza sativa (... 308 9e-84 gi|8928421|sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain (Beta-5 ... 308 9e-84 gi|115463893|ref|NP_001055546.1| Os05g0413200 [Oryza sativa (... 307 1e-83 gi|76257825|gb|ABA41230.1| beta-tubulin [Coleochaete scutata] 306 2e-83 gi|92889845|gb|ABE90057.1| Tubulin/FtsZ family, GTPase domain... 306 2e-83 gi|460989|emb|CAA55021.1| beta tubulin [Oryza sativa (japonica c 306 2e-83 gi|115455701|ref|NP_001051451.1| Os03g0780600 [Oryza sativa (... 306 2e-83 gi|303842|dbj|BAA02505.1| beta-tubulin [Oryza sativa (japonica c 306 2e-83 gi|493725|emb|CAA55912.1| beta tubulin [Oryza sativa (japonica c 306 3e-83 gi|115444453|ref|NP_001046006.1| Os02g0167300 [Oryza sativa (... 306 3e-83 gi|1076738|pir||JC2511 beta-tubulin R2242 - rice 306 3e-83 gi|54036491|sp|Q6VAF8|TBB3_GOSHI Tubulin beta-3 chain (Beta-3... 306 4e-83 gi|54036490|sp|Q6VAF7|TBB5_GOSHI Tubulin beta-5 chain (Beta-5... 306 4e-83 gi|76257831|gb|ABA41233.1| beta-tubulin [Mesostigma viride] 305 5e-83 gi|15451226|gb|AAK96884.1| beta tubulin [Arabidopsis thaliana... 305 5e-83 gi|166908|gb|AAA32886.1| beta-8 tubulin 305 5e-83 gi|76573337|gb|ABA46773.1| unknown [Solanum tuberosum] 305 5e-83 gi|76573295|gb|ABA46752.1| unknown [Solanum tuberosum] 305 5e-83 gi|8928412|sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain (Beta-2 ... 305 5e-83 gi|8928420|sp|Q43695|TBB3_MAIZE Tubulin beta-3 chain (Beta-3 ... 305 5e-83 gi|18420724|ref|NP_568437.1| TUB8 [Arabidopsis thaliana] >gi|... 305 5e-83 gi|5668667|dbj|BAA82637.1| Beta-tubulin [Zinnia elegans] 305 5e-83 gi|586076|sp|P37392|TBB1_LUPAL Tubulin beta-1 chain (Beta-1 t... 305 5e-83 gi|74053562|sp|Q40665|TBB3_ORYSA Tubulin beta-3 chain (Beta-3... 305 6e-83 gi|135449|sp|P18025|TBB1_MAIZE Tubulin beta-1 chain (Beta-1 t... 305 6e-83 gi|8928403|sp|P93176|TBB_HORVU Tubulin beta chain (Beta tubul... 305 6e-83 gi|8928426|sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 ... 305 6e-83 gi|78210840|dbj|BAE47136.1| beta tubulin like protein [Pyrus pyr 295 8e-83 gi|62319752|dbj|BAD93731.1| tubulin beta-2/beta-3 chain [Arabido 305 8e-83 gi|51988178|emb|CAE52517.1| beta tubulin [Setaria viridis] 305 8e-83 gi|62546343|gb|AAX86048.1| tubulin B4 [Glycine max] 305 8e-83 gi|8928415|sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 ... 305 8e-83 gi|18424620|ref|NP_568959.1| TUB2; GTP binding / GTPase/ stru... 305 8e-83 gi|115450157|ref|NP_001048679.1| Os03g0105600 [Oryza sativa (... 305 8e-83 gi|15227559|ref|NP_180515.1| TUB7 [Arabidopsis thaliana] >gi|... 305 8e-83 gi|37038236|gb|AAQ88117.1| beta-tubulin 4 [Physcomitrella patens 304 1e-82 gi|4098333|gb|AAD10493.1| beta-tubulin 6 [Triticum aestivum] 304 1e-82 gi|8928429|sp|Q9ZRB0|TBB3_WHEAT Tubulin beta-3 chain (Beta-3 ... 304 1e-82 gi|135444|sp|P25862|TBB1_AVESA Tubulin beta-1 chain (Beta-1 t... 304 1e-82 gi|464850|sp|P33630|TBB1_ANEPH Tubulin beta-1 chain (Beta-1 t... 304 1e-82 gi|14331109|emb|CAC40860.1| beta-tubulin [Medicago sativa subsp. 304 1e-82 gi|416145|gb|AAA19707.1| beta-4 tubulin 304 1e-82 gi|8928430|sp|Q9ZRB1|TBB2_WHEAT Tubulin beta-2 chain (Beta-2 ... 304 1e-82 gi|8928431|sp|Q9ZRB2|TBB1_WHEAT Tubulin beta-1 chain (Beta-1 ... 304 1e-82 gi|26450912|dbj|BAC42563.1| putative tubulin beta-6 chain [Arabi 303 2e-82 gi|267076|sp|P29502|TBB3_PEA Tubulin beta-3 chain (Beta-3 tub... 303 2e-82 gi|15239914|ref|NP_196786.1| TUB6 (BETA-6 TUBULIN) [Arabidops... 303 2e-82 gi|92894218|gb|ABE92128.1| Cell division protein FtsZ; Peptid... 303 2e-82 gi|19569135|gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypiu... 303 2e-82 gi|4105696|gb|AAD02498.1| beta tubulin 1 [Arabidopsis thaliana] 303 2e-82 gi|115454449|ref|NP_001050825.1| Os03g0661300 [Oryza sativa (... 303 2e-82 gi|15222873|ref|NP_177706.1| TUB1; GTP binding / GTPase/ stru... 303 2e-82 gi|76257829|gb|ABA41232.1| beta-tubulin [Mesostigma viride] 303 3e-82 gi|4165490|emb|CAA10664.1| beta-tubulin 2 [Hordeum vulgare subsp 303 3e-82 gi|515692|gb|AAA20243.1| beta-tubulin 303 3e-82 gi|77416913|gb|ABA81852.1| unknown [Solanum tuberosum] 303 3e-82 gi|135452|sp|P12459|TBB1_SOYBN Tubulin beta-1 chain (Beta-1 t... 303 3e-82 gi|8928413|sp|Q41782|TBB4_MAIZE Tubulin beta-4 chain (Beta-4 ... 303 3e-82 gi|267072|sp|P29500|TBB1_PEA Tubulin beta-1 chain (Beta-1 tub... 303 3e-82 gi|8928427|sp|Q9ZRA8|TBB5_WHEAT Tubulin beta-5 chain (Beta-5 ... 303 3e-82 gi|81816|pir||JA0048 tubulin beta-1 chain - soybean 303 3e-82 gi|115469470|ref|NP_001058334.1| Os06g0671900 [Oryza sativa (... 280 5e-82 gi|7209194|emb|CAB76916.1| beta tubulin 3 [Hordeum vulgare subsp 302 5e-82 gi|73808020|dbj|BAE20246.1| beta-tubulin [Lactuca sativa] >gi... 302 5e-82 gi|5668671|dbj|BAA82639.1| Beta-tubulin [Zinnia elegans] 302 5e-82 gi|829169|gb|AAA67322.1| beta-tubulin 281 7e-82 gi|76257833|gb|ABA41234.1| beta-tubulin [Nephroselmis rotunda... 301 7e-82 gi|54036487|sp|Q6VAF4|TBB9_GOSHI Tubulin beta-9 chain (Beta-9... 301 7e-82 gi|73808024|dbj|BAE20248.1| beta-tubulin [Lactuca sativa] 301 1e-81 gi|8928428|sp|Q9ZRA9|TBB4_WHEAT Tubulin beta-4 chain (Beta-4 ... 301 1e-81 gi|23452315|gb|AAN32988.1| beta-tubulin 1 [Gossypium hirsutum] 300 2e-81 gi|92876121|gb|ABE83854.1| Cell division protein FtsZ [Medicago 300 2e-81
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 396 Number of extensions: 11 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 523 Length of database: 101065385 Length adjustment: 105 Effective length of query: 418 Effective length of database: 71308700 Effective search space: 4920300300 Effective search space used: 4920300300 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)