RID=1169014826-15742-96427978436.BLASTQ4, Contig373

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169014826-15742-96427978436.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig373
Length=543

Distribution of 13 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115480453|ref|NP_001063820.1|  Os09g0542200 [Oryza sativa (...  32.0    1.4   
gi|32526672|dbj|BAC79195.1|  unknown protein [Oryza sativa (japon  32.0    1.4  
gi|108864476|gb|ABA94215.2|  MRG family protein, putative, exp...  31.2    2.4  
gi|115485831|ref|NP_001068059.1|  Os11g0545600 [Oryza sativa (...  31.2    2.4   
gi|90265046|emb|CAH67642.1|  H0102C09.3 [Oryza sativa (indica cul  31.2    2.4  
gi|115456780|ref|NP_001051990.1|  Os04g0101300 [Oryza sativa (...  31.2    2.4   
gi|38344758|emb|CAE01575.2|  OSJNBa0068L06.1 [Oryza sativa (japon  31.2    2.4  
gi|3056725|gb|AAC39443.1|  ent-kaurene synthase [Arabidopsis thal  29.6    7.0   
gi|51970264|dbj|BAD43824.1|  putative protein [Arabidopsis thalia  29.6    7.0   
gi|15219383|ref|NP_178064.1|  GA2 (GA REQUIRING 2); ent-kauren...  29.6    7.0   
gi|11497481|ref|NP_042271.1|  ribosomal protein S4 [Prototheca...  29.6    7.0   
gi|15236054|ref|NP_195694.1|  unknown protein [Arabidopsis tha...  29.3    9.2   
gi|7525093|ref|NP_051117.1|  hypothetical protein Arthcp087 [A...  29.3    9.2

Alignments

 

>gi|115480453|ref|NP_001063820.1|  Os09g0542200 [Oryza sativa (japonica cultivar-group)]
 gi|52076083|dbj|BAD46596.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113632053|dbj|BAF25734.1|  Os09g0542200 [Oryza sativa (japonica cultivar-group)]
Length=237

 Score = 32.0 bits (71),  Expect = 1.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query  485  RKVPRSSLIIFPFPLTFGTSRSIICREKKGALVLLQKPAF-MLETFLK  345
            R  PR SLI+ PFPL + T+  + CR    A  L     + +LE F K
Sbjct  82   RYAPRVSLIVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFK  129


>gi|32526672|dbj|BAC79195.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
Length=220

 Score = 32.0 bits (71),  Expect = 1.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query  485  RKVPRSSLIIFPFPLTFGTSRSIICREKKGALVLLQKPAF-MLETFLK  345
            R  PR SLI+ PFPL + T+  + CR    A  L     + +LE F K
Sbjct  82   RYAPRVSLIVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFK  129


>gi|108864476|gb|ABA94215.2|  MRG family protein, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=305

 Score = 31.2 bits (69),  Expect = 2.4
 Identities = 13/15 (86%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +3

Query  372  RFLQKNQSTFFLSAY  416
            +FLQKNQS+FFLSAY
Sbjct  278  KFLQKNQSSFFLSAY  292


>gi|115485831|ref|NP_001068059.1|  Os11g0545600 [Oryza sativa (japonica cultivar-group)]
 gi|108864477|gb|ABG22519.1|  MRG family protein, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113645281|dbj|BAF28422.1|  Os11g0545600 [Oryza sativa (japonica cultivar-group)]
Length=230

 Score = 31.2 bits (69),  Expect = 2.4
 Identities = 13/15 (86%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +3

Query  372  RFLQKNQSTFFLSAY  416
            +FLQKNQS+FFLSAY
Sbjct  203  KFLQKNQSSFFLSAY  217


>gi|90265046|emb|CAH67642.1|  H0102C09.3 [Oryza sativa (indica cultivar-group)]
Length=385

 Score = 31.2 bits (69),  Expect = 2.4
 Identities = 13/15 (86%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +3

Query  372  RFLQKNQSTFFLSAY  416
            +FLQKNQS+FFLSAY
Sbjct  358  KFLQKNQSSFFLSAY  372


>gi|115456780|ref|NP_001051990.1|  Os04g0101300 [Oryza sativa (japonica cultivar-group)]
 gi|38567693|emb|CAE75983.1|  B1160F02.14 [Oryza sativa (japonica cultivar-group)]
 gi|113563561|dbj|BAF13904.1|  Os04g0101300 [Oryza sativa (japonica cultivar-group)]
Length=391

 Score = 31.2 bits (69),  Expect = 2.4
 Identities = 13/15 (86%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +3

Query  372  RFLQKNQSTFFLSAY  416
            +FLQKNQS+FFLSAY
Sbjct  368  KFLQKNQSSFFLSAY  382


>gi|38344758|emb|CAE01575.2|  OSJNBa0068L06.1 [Oryza sativa (japonica cultivar-group)]
Length=385

 Score = 31.2 bits (69),  Expect = 2.4
 Identities = 13/15 (86%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +3

Query  372  RFLQKNQSTFFLSAY  416
            +FLQKNQS+FFLSAY
Sbjct  358  KFLQKNQSSFFLSAY  372


>gi|3056725|gb|AAC39443.1|  ent-kaurene synthase [Arabidopsis thaliana]
Length=785

 Score = 29.6 bits (65),  Expect = 7.0
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
 Frame = -2

Query  227  VSLYMHHQIKRNCRQMQLQSIHILTKKKKSRVMLHSSKTTKVSTKAEMILERQGSIVYQR  48
            VSL+M H+     +++ ++S+  L ++K+    LH           +++LE +GS+V + 
Sbjct  692  VSLHMKHERDNRSKEVIIESMKGLAERKREE--LH-----------KLVLEEKGSVVPRE  738

Query  47   TKNIYIKETNCNYMF  3
             K  ++K +    +F
Sbjct  739  CKEAFLKMSKVLNLF  753


>gi|51970264|dbj|BAD43824.1|  putative protein [Arabidopsis thaliana]
Length=774

 Score = 29.6 bits (65),  Expect = 7.0
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
 Frame = -2

Query  227  VSLYMHHQIKRNCRQMQLQSIHILTKKKKSRVMLHSSKTTKVSTKAEMILERQGSIVYQR  48
            VSL+M H+     +++ ++S+  L ++K+    LH           +++LE +GS+V + 
Sbjct  681  VSLHMKHERDNRSKEVIIESMKGLAERKREE--LH-----------KLVLEEKGSVVPRE  727

Query  47   TKNIYIKETNCNYMF  3
             K  ++K +    +F
Sbjct  728  CKEAFLKMSKVLNLF  742


>gi|15219383|ref|NP_178064.1|  GA2 (GA REQUIRING 2); ent-kaurene synthase [Arabidopsis thaliana]
 gi|62900442|sp|Q9SAK2|KSB_ARATH  Ent-kaurene synthase B, chloroplast precursor (KSB) (AtKS)
 gi|4835764|gb|AAD30231.1|AC007202_13  Identical to gb|AF034774 ent-kaurene synthase (GA2) from Arabidopsis 
thaliana
Length=785

 Score = 29.6 bits (65),  Expect = 7.0
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
 Frame = -2

Query  227  VSLYMHHQIKRNCRQMQLQSIHILTKKKKSRVMLHSSKTTKVSTKAEMILERQGSIVYQR  48
            VSL+M H+     +++ ++S+  L ++K+    LH           +++LE +GS+V + 
Sbjct  692  VSLHMKHERDNRSKEVIIESMKGLAERKREE--LH-----------KLVLEEKGSVVPRE  738

Query  47   TKNIYIKETNCNYMF  3
             K  ++K +    +F
Sbjct  739  CKEAFLKMSKVLNLF  753


>gi|11497481|ref|NP_042271.1|  ribosomal protein S4 [Prototheca wickerhamii]
 gi|1173305|sp|P46743|RT04_PROWI  Mitochondrial ribosomal protein S4
 gi|467872|gb|AAD12659.1|  ribosomal protein S4 [Prototheca wickerhamii]
Length=511

 Score = 29.6 bits (65),  Expect = 7.0
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query  204  NKKKL*TDAIAKHSYLNKKEKEQSYVTLIQNNKSVNKSRNDFGKTRLNSL  55
            NKK++ T AI    YL  K   + Y  +  NN   + S N F K  LNSL
Sbjct  335  NKKEI-TSAIDYTKYLQIKNSRKKYKLITLNNNLDSLSFNIFDKEILNSL  383


>gi|15236054|ref|NP_195694.1|  unknown protein [Arabidopsis thaliana]
 gi|4490735|emb|CAB38897.1|  putative protein [Arabidopsis thaliana]
 gi|7271039|emb|CAB80647.1|  putative protein [Arabidopsis thaliana]
 gi|18175809|gb|AAL59931.1|  unknown protein [Arabidopsis thaliana]
 gi|22136848|gb|AAM91768.1|  unknown protein [Arabidopsis thaliana]
Length=451

 Score = 29.3 bits (64),  Expect = 9.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
 Frame = -1

Query  210  PPNKKKL*TDAIAKHSYLNKKEKEQSYVTLIQNNKSVNKSRNDFGKT  70
            PP KKKL TD+++  S  +  +K Q+ +    ++ S  K++    KT
Sbjct  70   PPKKKKLLTDSVSSSSSSSGTKKNQTKLLKPISSSSSTKNQTKLAKT  116


>gi|7525093|ref|NP_051117.1|  hypothetical protein Arthcp087 [Arabidopsis thaliana]
 gi|6686164|sp|P56785|YCF1_ARATH  Putative membrane protein ycf1
 gi|5881754|dbj|BAA84445.1|  ycf1 [Arabidopsis thaliana]
Length=1786

 Score = 29.3 bits (64),  Expect = 9.2
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = -1

Query  204   NKKKL*TDAIAKHSYLNKKEKEQSYVTLIQNNKSVNKSRNDF  79
             NK K+ +    K SY+NKK  E+S +T  Q NK+VNK +N++
Sbjct  1639  NKHKI-SKRYKKKSYINKKFFEKS-ITKYQ-NKTVNKKKNNY  1677

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 389
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 543
Length of database: 101065385
Length adjustment: 106
Effective length of query: 437
Effective length of database: 71025303
Effective search space: 5326897725
Effective search space used: 5326897725
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)