Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169015367-16217-47031717717.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig383 Length=526
Score E Sequences producing significant alignments: (Bits) Value gi|3695063|gb|AAC62626.1| rac GTPase activating protein 3 [Lotus 287 2e-77 gi|3924601|gb|AAC79102.1| putative rac GTPase activating prot... 277 1e-74 gi|42566263|ref|NP_192219.2| Rac GTPase activator [Arabidopsis t 277 1e-74 gi|115488872|ref|NP_001066923.1| Os12g0533400 [Oryza sativa (... 256 4e-68 gi|77556015|gb|ABA98811.1| rac GTPase activating protein 3, p... 256 4e-68 gi|115471677|ref|NP_001059437.1| Os07g0408500 [Oryza sativa (... 240 2e-63 gi|3695061|gb|AAC62625.1| rac GTPase activating protein 2 [Lotus 221 1e-57 gi|115447915|ref|NP_001047737.1| Os02g0679500 [Oryza sativa (... 221 2e-57 gi|34451568|gb|AAQ72348.1| Rho GTPase activating protein 2 [O... 221 2e-57 gi|50253132|dbj|BAD29378.1| putative Rho GTPase activating pr... 221 2e-57 gi|115460060|ref|NP_001053630.1| Os04g0577200 [Oryza sativa (... 219 3e-57 gi|110676572|gb|ABG85154.1| RhoGAP1 [Nicotiana tabacum] 219 4e-57 gi|116309679|emb|CAH66727.1| H0404F02.3 [Oryza sativa (indica cu 218 1e-56 gi|62732733|gb|AAX94852.1| rac GTPase activating protein 1 [O... 216 5e-56 gi|115484233|ref|NP_001065778.1| Os11g0153400 [Oryza sativa (... 216 5e-56 gi|15229771|ref|NP_187756.1| Rac GTPase activator [Arabidopsi... 215 6e-56 gi|15242231|ref|NP_197632.1| Rac GTPase activator [Arabidopsi... 215 6e-56 gi|3831445|gb|AAC69928.1| putative rac GTPase activating protein 212 5e-55 gi|30690481|ref|NP_850458.1| Rac GTPase activator [Arabidopsi... 212 5e-55 gi|3695059|gb|AAC62624.1| rac GTPase activating protein 1 [Lotus 210 2e-54 gi|87240813|gb|ABD32671.1| RhoGAP; Wiscott-Aldrich syndrome, ... 210 3e-54 gi|15223179|ref|NP_172310.1| Rac GTPase activator [Arabidopsi... 199 4e-51 gi|6664303|gb|AAF22885.1|AC006932_2 T27G7.4 [Arabidopsis thalian 193 3e-49 gi|6579202|gb|AAF18245.1|AC011438_7 T23G18.20 [Arabidopsis thali 193 3e-49 gi|115442457|ref|NP_001045508.1| Os01g0967200 [Oryza sativa (... 163 3e-40 gi|15225881|ref|NP_180313.1| Rac GTPase activator [Arabidopsi... 146 4e-35 gi|108862218|gb|ABA96485.2| rac GTPase activating protein 1, ... 141 2e-33 gi|115487412|ref|NP_001066193.1| Os12g0155200 [Oryza sativa (... 49.3 8e-06 gi|42567107|ref|NP_194189.2| Rho GTPase activator [Arabidopsis t 35.4 0.12 gi|50726234|dbj|BAD33811.1| hypothetical protein [Oryza sativ... 32.7 0.77 gi|115472129|ref|NP_001059663.1| Os07g0486500 [Oryza sativa (... 32.3 1.00 gi|2462134|emb|CAA73798.1| reverse transcriptase [Beta vulgaris 31.2 2.2 gi|92878608|gb|ABE85146.1| Ribosome-binding factor A [Medicago t 30.0 5.0 gi|116060518|emb|CAL55854.1| unnamed protein product [Ostreococc 29.6 6.5 gi|167367|gb|AAA99868.1| peroxidase 29.3 8.5 gi|33146479|dbj|BAC79588.1| receptor-like kinase-like [Oryza ... 29.3 8.5 gi|25407369|pir||G85071 hypothetical protein AT4g07370 [impor... 29.3 8.5
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 314 Number of extensions: 13 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 526 Length of database: 101065385 Length adjustment: 106 Effective length of query: 420 Effective length of database: 71025303 Effective search space: 4900745907 Effective search space used: 4900745907 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)