RID=1169016441-17973-180201383899.BLASTQ1, Contig400

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169016441-17973-180201383899.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig400
Length=555

Distribution of 16 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|5706704|gb|AAD47346.1|AF112440_1  ribosomal protein S26 [Pisum   163    4e-40
gi|3885515|gb|AAC77928.1|  similar to ribosomal protein S26 [Medi   159    8e-39
gi|15228895|ref|NP_191193.1|  structural constituent of riboso...   139    7e-33 
gi|15226694|ref|NP_181583.1|  structural constituent of riboso...   137    3e-32 
gi|15226715|ref|NP_181591.1|  structural constituent of riboso...   137    3e-32 
gi|20466414|gb|AAM20524.1|  40S ribosomal protein S26 [Arabidopsi   135    7e-32 
gi|46575999|gb|AAT01360.1|  putative 40S ribosomal protein S26...   132    1e-30 
gi|115440757|ref|NP_001044658.1|  Os01g0823300 [Oryza sativa (...   131    1e-30 
gi|115464481|ref|NP_001055840.1|  Os05g0477300 [Oryza sativa (...   131    2e-30 
gi|971284|dbj|BAA07208.1|  ribosomal protein S31 [Oryza sativa (j   127    2e-29 
gi|116061674|emb|CAL52392.1|  T50822 ribosomal protein S26, cy...  92.0    1e-18
gi|28876010|gb|AAO60019.1|  putative ribosomal protein [Oryza ...  53.5    5e-07 
gi|115456179|ref|NP_001051690.1|  Os03g0816200 [Oryza sativa (...  33.9    0.39  
gi|18397707|ref|NP_566291.1|  unknown protein [Arabidopsis tha...  32.0    1.5   
gi|38154346|gb|AAR12160.1|  gibberellin 3-oxidase [Populus tremul  29.6    7.4   
gi|34809529|gb|AAQ82685.1|  3-hydroxy-3-methylglutaryl coenzyme A  29.6    7.4

Alignments

 

>gi|5706704|gb|AAD47346.1|AF112440_1  ribosomal protein S26 [Pisum sativum]
Length=130

 Score =  163 bits (412),  Expect = 4e-40
 Identities = 106/110 (96%), Positives = 108/110 (98%), Gaps = 0/110 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDK+IKRFLVRNIVEQAAVRDVQEACVYD
Sbjct  1    MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
             YTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDD P+
Sbjct  61   QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPR  110


>gi|3885515|gb|AAC77928.1|  similar to ribosomal protein S26 [Medicago sativa]
Length=124

 Score =  159 bits (401),  Expect = 8e-39
 Identities = 88/93 (94%), Positives = 90/93 (96%), Gaps = 0/93 (0%)
 Frame = +2

Query  113  VKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYDMYTLPKLYVKMQYCVSC  292
            VKFIRCSNCGKCCPKDK+IKRFLVRNIVEQAAVRDVQEACVYD YTL KLYVKMQYCVSC
Sbjct  12   VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLHKLYVKMQYCVSC  71

Query  293  AIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
            AIHSHVVRVRSRTDRRKRDPPQRFIRRRDD P+
Sbjct  72   AIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPR  104


>gi|15228895|ref|NP_191193.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75264413|sp|Q9LYK9|RS263_ARATH  40S ribosomal protein S26-3
 gi|7572932|emb|CAB87433.1|  40S ribosomal protein S26 homolog [Arabidopsis thaliana]
 gi|14532524|gb|AAK63990.1|  AT3g56340/F18O21_300 [Arabidopsis thaliana]
 gi|22137298|gb|AAM91494.1|  AT3g56340/F18O21_300 [Arabidopsis thaliana]
Length=130

 Score =  139 bits (350),  Expect = 7e-33
 Identities = 92/110 (83%), Positives = 99/110 (90%), Gaps = 0/110 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDK+IKRF+VRNIVEQAA+RDVQEA VY+
Sbjct  1    MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
             YTLPKLY K QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PK
Sbjct  61   GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK  110


>gi|15226694|ref|NP_181583.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|115502826|sp|Q8LPJ7|RS262_ARATH  40S ribosomal protein S26-2
 gi|2651314|gb|AAB87594.1|  40S ribosomal protein S26 [Arabidopsis thaliana]
 gi|21555493|gb|AAM63871.1|  40S ribosomal protein S26 [Arabidopsis thaliana]
 gi|56236112|gb|AAV84512.1|  At2g40510 [Arabidopsis thaliana]
 gi|111074312|gb|ABH04529.1|  At2g40510 [Arabidopsis thaliana]
Length=133

 Score =  137 bits (345),  Expect = 3e-32
 Identities = 91/110 (82%), Positives = 98/110 (89%), Gaps = 0/110 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDK+IKRF+VRNIVEQAA+RDVQEA VY+
Sbjct  1    MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
             YTLPKLY K QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PK
Sbjct  61   GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK  110


>gi|15226715|ref|NP_181591.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|3123279|sp|P49206|RS261_ARATH  40S ribosomal protein S26-1
 gi|2651298|gb|AAB87578.1|  40S ribosomal protein S26 [Arabidopsis thaliana]
 gi|22022538|gb|AAM83227.1|  At2g40590/T2P4.6 [Arabidopsis thaliana]
 gi|24111313|gb|AAN46780.1|  At2g40590/T2P4.6 [Arabidopsis thaliana]
Length=131

 Score =  137 bits (345),  Expect = 3e-32
 Identities = 91/110 (82%), Positives = 98/110 (89%), Gaps = 0/110 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDK+IKRF+VRNIVEQAA+RDVQEA VY+
Sbjct  1    MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
             YTLPKLY K QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PK
Sbjct  61   GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPK  110


>gi|20466414|gb|AAM20524.1|  40S ribosomal protein S26 [Arabidopsis thaliana]
Length=133

 Score =  135 bits (341),  Expect = 7e-32
 Identities = 90/110 (81%), Positives = 97/110 (88%), Gaps = 0/110 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDK+IKRF+VRNIVEQAA+RDVQEA VY+
Sbjct  1    MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
             YT PKLY K QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PK
Sbjct  61   GYTFPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPK  110


>gi|46575999|gb|AAT01360.1|  putative 40S ribosomal protein S26 [Oryza sativa (japonica cultivar-group)]
Length=194

 Score =  132 bits (331),  Expect = 1e-30
 Identities = 91/124 (73%), Positives = 104/124 (83%), Gaps = 4/124 (3%)
 Frame = +2

Query  17   AEAESFQKPPHLPQAMTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIV  196
            A + S   P +LP   TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDK+IKRF VRNIV
Sbjct  47   AASASSSSPLNLP---TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIV  103

Query  197  EQAAVRDVQEACVYDMYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRR  376
            EQAA+RDVQEACV+D Y LPKLY K+ +CVSCAIH+H+VRVRSR +RR R PP+RF RRR
Sbjct  104  EQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRR  162

Query  377  DDMP  388
            +D P
Sbjct  163  EDRP  166


>gi|115440757|ref|NP_001044658.1|  Os01g0823300 [Oryza sativa (japonica cultivar-group)]
 gi|109940158|sp|P49216|RS26_ORYSA  40S ribosomal protein S26 (S31)
 gi|56201998|dbj|BAD73505.1|  putative ribosomal protein S26 [Oryza sativa (japonica cultivar-group)]
 gi|57900258|dbj|BAD87076.1|  putative ribosomal protein S26 [Oryza sativa (japonica cultivar-group)]
 gi|113534189|dbj|BAF06572.1|  Os01g0823300 [Oryza sativa (japonica cultivar-group)]
Length=133

 Score =  131 bits (330),  Expect = 1e-30
 Identities = 87/110 (79%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDK+IKRF VRNIVEQAA+RDVQEACV+D
Sbjct  1    MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
             Y LPKLY K+ +CVSCAIH+H+VRVRSR +RR R PP+RF RRR+D P+
Sbjct  61   GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQ  109


>gi|115464481|ref|NP_001055840.1|  Os05g0477300 [Oryza sativa (japonica cultivar-group)]
 gi|113579391|dbj|BAF17754.1|  Os05g0477300 [Oryza sativa (japonica cultivar-group)]
Length=136

 Score =  131 bits (329),  Expect = 2e-30
 Identities = 87/109 (79%), Positives = 98/109 (89%), Gaps = 1/109 (0%)
 Frame = +2

Query  62   MTFkrrnggrnkhgrghVKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYD  241
            MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDK+IKRF VRNIVEQAA+RDVQEACV+D
Sbjct  1    MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD  60

Query  242  MYTLPKLYVKMQYCVSCAIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMP  388
             Y LPKLY K+ +CVSCAIH+H+VRVRSR +RR R PP+RF RRR+D P
Sbjct  61   GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRP  108


>gi|971284|dbj|BAA07208.1|  ribosomal protein S31 [Oryza sativa (japonica cultivar-group)]
Length=133

 Score =  127 bits (320),  Expect = 2e-29
 Identities = 68/93 (73%), Positives = 80/93 (86%), Gaps = 1/93 (1%)
 Frame = +2

Query  113  VKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYDMYTLPKLYVKMQYCVSC  292
            VK+IRCSNC KCCPKDK+IKRF VRNIVEQ A+RDVQE CV+D Y LPKLY K+ +CVSC
Sbjct  18   VKYIRCSNCAKCCPKDKAIKRFQVRNIVEQVAIRDVQEGCVHDGYVLPKLYAKVHHCVSC  77

Query  293  AIHSHvvrvrsrtdrrkrDPPQRFIRRRDDMPK  391
            AIH+H+VRVRSR +RR R PP+RF RRR+D P+
Sbjct  78   AIHAHIVRVRSRENRRDRRPPERF-RRREDRPQ  109


>gi|116061674|emb|CAL52392.1|  T50822 ribosomal protein S26, cytosolic (ISS) [Ostreococcus tauri]
Length=221

 Score = 92.0 bits (227),  Expect = 1e-18
 Identities = 52/84 (61%), Positives = 66/84 (78%), Gaps = 0/84 (0%)
 Frame = +2

Query  113  VKFIRCSNCGKCCPKDKSIKRFLVRNIVEQAAVRDVQEACVYDMYTLPKLYVKMQYCVSC  292
            VK + C + G   PKDK+++RF+VRNIVE AA+RD+QE+C ++ YTLPKLY K+ Y +S 
Sbjct  127  VKRVFCESSGALVPKDKAVRRFMVRNIVESAAIRDLQESCAFESYTLPKLYRKVYYSISA  186

Query  293  AIHSHvvrvrsrtdrrkrDPPQRF  364
            AIHS VVRVRSR  RR RDPP+RF
Sbjct  187  AIHSKVVRVRSREARRIRDPPKRF  210


>gi|28876010|gb|AAO60019.1|  putative ribosomal protein [Oryza sativa (japonica cultivar-group)]
Length=108

 Score = 53.5 bits (127),  Expect = 5e-07
 Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
 Frame = +2

Query  158  DKSIKRFLVRNIVEQAAV-RDVQEACVYDMYTLPKLYVKMQYCVSC-AIHSHvvrvrsrt  331
            DK+I RFLVRNIVEQAAV R  +  C    + LPKLY K+ +CVS  AIH+H+V VRS  
Sbjct  35   DKAINRFLVRNIVEQAAVLRYARGLC----HVLPKLYAKVHHCVSWNAIHAHIVSVRSCE  90

Query  332  drrkrDPPQRF  364
            +RR  + PQ F
Sbjct  91   NRRNCELPQHF  101


>gi|115456179|ref|NP_001051690.1|  Os03g0816200 [Oryza sativa (japonica cultivar-group)]
 gi|113550161|dbj|BAF13604.1|  Os03g0816200 [Oryza sativa (japonica cultivar-group)]
Length=61

 Score = 33.9 bits (76),  Expect = 0.39
 Identities = 16/18 (88%), Positives = 17/18 (94%), Gaps = 0/18 (0%)
 Frame = +2

Query  158  DKSIKRFLVRNIVEQAAV  211
            DK+I RFLVRNIVEQAAV
Sbjct  35   DKAINRFLVRNIVEQAAV  52


>gi|18397707|ref|NP_566291.1|  unknown protein [Arabidopsis thaliana]
 gi|7549638|gb|AAF63823.1|  unknown protein [Arabidopsis thaliana]
 gi|14532648|gb|AAK64052.1|  unknown protein [Arabidopsis thaliana]
 gi|21281034|gb|AAM44911.1|  unknown protein [Arabidopsis thaliana]
Length=147

 Score = 32.0 bits (71),  Expect = 1.5
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
 Frame = +3

Query  150  ALRTSQSRGFL*GTLWSKLLSGMSRKPASMTCTLCLSCM*RCNTAFPVPSTPTL*GSDPA  329
            A+R S   G L   +   LL  ++ K  +++CT+C SC   CN   PVPS+ +     P+
Sbjct  3    AIRFSNLSGLLILLMSLPLL--VTSKDETVSCTMCSSCDNPCN---PVPSSYSPPPPPPS  57

Query  330  LTGGSVTH----PSASSDAGM  380
             +GG  ++    P  SS  G+
Sbjct  58   SSGGGGSYYYSPPPPSSSGGV  78


>gi|38154346|gb|AAR12160.1|  gibberellin 3-oxidase [Populus tremula x Populus tremuloides]
Length=373

 Score = 29.6 bits (65),  Expect = 7.4
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
 Frame = -3

Query  364  EALGWVTLPPVSAG-----SDPHNVGVDGTGNAVLHLHIQLRQSVHVIDAGFLDIPDSSL  200
            E +GWVT+PP+  G      D  ++  +G   +VLH  + + ++ H +   +L  P SS+
Sbjct  254  EGIGWVTVPPIPGGLVVNVGDLLHILSNGLYPSVLHRAV-VNRTKHRLSIAYLYGPPSSV  312


>gi|34809529|gb|AAQ82685.1|  3-hydroxy-3-methylglutaryl coenzyme A reductase [Taxus x media]
Length=595

 Score = 29.6 bits (65),  Expect = 7.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query  384  MSSLRLMKRWGGSRFLLSVRDRTLTTWEWMAQETQYCIFTYSLG  253
            +SS  LM+RWGG +   S+    ++ WE +A   Q   F Y LG
Sbjct  77   VSSYFLMRRWGG-KIRKSIPLHAVSFWELVAILAQLSSFIYLLG  119

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 327
Number of extensions: 9
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 555
Length of database: 101065385
Length adjustment: 106
Effective length of query: 449
Effective length of database: 71025303
Effective search space: 5610998937
Effective search space used: 5610998937
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)