Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169017511-6857-103748864152.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig414 Length=172
Score E Sequences producing significant alignments: (Bits) Value gi|4105798|gb|AAD02556.1| PGPD14 [Petunia x hybrida] 90.9 1e-18 gi|62318677|dbj|BAD95176.1| PGPD14 protein [Arabidopsis thaliana 89.7 3e-18 gi|21593716|gb|AAM65683.1| PGPD14 protein [Arabidopsis thaliana] 89.7 3e-18 gi|15237169|ref|NP_197683.1| ubiquitin-protein ligase/ zinc i... 89.7 3e-18 gi|115450705|ref|NP_001048953.1| Os03g0145900 [Oryza sativa (... 85.5 5e-17 gi|108706163|gb|ABF93958.1| CHY zinc finger family protein, e... 85.5 5e-17 gi|93359554|gb|ABF13303.1| ubiqutin ligase [Phaseolus vulgaris] 85.1 7e-17 gi|110289181|gb|ABB47749.2| CHY zinc finger family protein, e... 85.1 7e-17 gi|115482328|ref|NP_001064757.1| Os10g0456800 [Oryza sativa (... 85.1 7e-17 gi|92875763|gb|ABE83637.1| Zinc finger, RING-type; Zinc finge... 84.7 9e-17 gi|42568081|ref|NP_197938.2| protein binding / ubiquitin-prot... 81.6 7e-16 gi|115439603|ref|NP_001044081.1| Os01g0719100 [Oryza sativa (... 71.6 8e-13 gi|15238890|ref|NP_197366.1| protein binding / ubiquitin-prot... 71.6 8e-13 gi|46310216|gb|AAS87371.1| zinc finger protein [Oryza sativa (ja 70.9 1e-12 gi|115488908|ref|NP_001066941.1| Os12g0538500 [Oryza sativa (... 64.3 1e-10 gi|79456855|ref|NP_191856.4| protein binding / ubiquitin-prot... 53.5 2e-07 gi|30102616|gb|AAP21226.1| At3g62970 [Arabidopsis thaliana] 53.5 2e-07 gi|110741653|dbj|BAE98773.1| hypothetical protein [Arabidopsis t 51.6 8e-07 gi|15221379|ref|NP_177614.1| protein binding / ubiquitin-prot... 51.6 8e-07 gi|110289180|gb|AAP54090.2| CHY zinc finger family protein, e... 50.8 1e-06 gi|8778297|gb|AAF79306.1|AC068602_29 F14D16.3 [Arabidopsis thali 50.4 2e-06 gi|15221895|ref|NP_173325.1| protein binding / ubiquitin-prot... 50.4 2e-06 gi|51971246|dbj|BAD44315.1| hypothetical protein [Arabidopsis th 50.4 2e-06 gi|15451615|gb|AAK98739.1|AC090485_18 Hypothetical protein with 48.9 2e-06 gi|108706164|gb|ABF93959.1| CHY zinc finger family protein, e... 48.9 5e-06 gi|115453009|ref|NP_001050105.1| Os03g0348900 [Oryza sativa (... 44.7 1e-04 gi|115465291|ref|NP_001056245.1| Os05g0551000 [Oryza sativa (... 44.3 1e-04 gi|92876788|gb|ABE84103.1| Zinc finger, RING-type; Zinc finge... 43.9 2e-04 gi|110741278|dbj|BAF02189.1| putative zinc finger protein [Arabi 43.5 2e-04 gi|15229615|ref|NP_188457.1| EMB2454; protein binding / ubiqu... 43.5 2e-04 gi|9279663|dbj|BAB01179.1| unnamed protein product [Arabidopsis 43.5 2e-04 gi|22347790|gb|AAM95976.1| putative zinc finger protein [Zea may 43.1 3e-04 gi|92873549|gb|ABE81983.1| Zinc finger, RING-type; Zinc finge... 42.4 5e-04 gi|92868944|gb|ABE78891.1| Zinc finger, RING-type; Zinc finge... 42.4 5e-04 gi|118764601|dbj|BAF38781.1| putative E3 ubiquitin ligase [Lotus 40.8 0.001 gi|7573426|emb|CAB87742.1| putative protein [Arabidopsis thalian 39.3 0.004 gi|116060310|emb|CAL55646.1| Zn-finger protein (ISS) [Ostreococc 37.7 0.012
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 16, 2007 5:53 PM Number of letters in database: 101,065,385 Number of sequences in database: 283,397 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283397 Number of Hits to DB: 91 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 172 Length of database: 101065385 Length adjustment: 30 Effective length of query: 142 Effective length of database: 92563475 Effective search space: 2499213825 Effective search space used: 2499213825 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)