RID=1169017770-24315-113245640892.BLASTQ1, Contig419

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1169017770-24315-113245640892.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,460,989 sequences; 1,533,424,333 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig419
Length=314

Distribution of 17 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|18399930|ref|NP_566450.1|  nucleic acid binding [Arabidopsi...  44.3    1e-04 
gi|92874925|gb|ABE83111.1|  Isopenicillin N synthetase; KH, type   34.3    0.13 
gi|7268986|emb|CAB80719.1|  putative GTP pyrophosphokinase [Arabi  32.7    0.39 
gi|8927662|gb|AAF82153.1|AC034256_17  Contains similarity to e...  32.0    0.66 
gi|110742286|dbj|BAE99068.1|  RSH1 [Arabidopsis thaliana]          31.6    0.87 
gi|42572809|ref|NP_974501.1|  RSH1 (RELA-SPOT HOMOLOG); ATP bi...  31.6    0.87  
gi|42570124|ref|NP_849287.2|  RSH1 (RELA-SPOT HOMOLOG); ATP bi...  31.6    0.87  
gi|18411893|ref|NP_567226.1|  RSH1 (RELA-SPOT HOMOLOG); ATP bi...  31.6    0.87  
gi|115463995|ref|NP_001055597.1|  Os05g0425600 [Oryza sativa (...  30.8    1.5   
gi|45476984|sp|Q9SHS7|BSL3_ARATH  Serine/threonine-protein pho...  29.6    3.3  
gi|115439815|ref|NP_001044187.1|  Os01g0738300 [Oryza sativa (...  29.3    4.3   
gi|115450299|ref|NP_001048750.1|  Os03g0115200 [Oryza sativa (...  28.9    5.6   
gi|27476101|gb|AAO17032.1|  Hypothetical protein [Oryza sativa (j  28.9    5.6   
gi|20160828|dbj|BAB89768.1|  putative partner of Nob1 [Oryza s...  28.9    5.6   
gi|33669476|gb|AAQ24835.1|  partner of Nob1 [Sorghum bicolor]      28.1    9.6   
gi|115473023|ref|NP_001060110.1|  Os07g0582700 [Oryza sativa (...  28.1    9.6

Alignments

 

>gi|18399930|ref|NP_566450.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|9294528|dbj|BAB02791.1|  unnamed protein product [Arabidopsis thaliana]
 gi|50897250|gb|AAT85764.1|  At3g13230 [Arabidopsis thaliana]
 gi|110738874|dbj|BAF01359.1|  hypothetical protein [Arabidopsis thaliana]
Length=215

 Score = 44.3 bits (103),  Expect = 1e-04
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 0/45 (0%)
 Frame = +2

Query  179  SIHCPQS*SLSP*KAHEMSDG*VQFRKGLRSTS*VSPLKKYWMDI  313
            ++  P   +  P KAHEMSDG VQFRK     +  SPLKK W+DI
Sbjct  16   TVPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDI  60


>gi|92874925|gb|ABE83111.1|  Isopenicillin N synthetase; KH, type 1 [Medicago truncatula]
Length=216

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 0/41 (0%)
 Frame = +2

Query  191  PQS*SLSP*KAHEMSDG*VQFRKGLRSTS*VSPLKKYWMDI  313
            P      P K HEM    VQFRK        +PLKK WMDI
Sbjct  19   PPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPLKKVWMDI  59


 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +1

Query  127  AAATMEIETLPSDPKPAFNSLPPKLKFEPLK  219
            A+++ME++ + S+ K     LPPK KFEPLK
Sbjct  2    ASSSMEVDNVLSEQKV----LPPKPKFEPLK  28


>gi|7268986|emb|CAB80719.1|  putative GTP pyrophosphokinase [Arabidopsis thaliana]
Length=816

 Score = 32.7 bits (73),  Expect = 0.39
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +1

Query  43   LLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLPPKLKFEPLKG  222
            +L   +SC    R +L+CV  S + S+ A++ + +ETL  D  P+ + LP K      KG
Sbjct  87   ILKSRLSCGGHKRWELYCV--SAESSSGASSDVTVETLWEDLFPSISYLPRKELEFVQKG  144

Query  223  A*DV*WLSPV  252
              ++ W S V
Sbjct  145  LKELDWESIV  154


>gi|8927662|gb|AAF82153.1|AC034256_17  Contains similarity to extensin (atExt1) from Arabidopsis thaliana 
gb|U43627 and is rich in proline and glycine.  EST gb|Z37262 
comes from this gene
Length=1006

 Score = 32.0 bits (71),  Expect = 0.66
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
 Frame = +1

Query  13   QPCCRCVRSPLLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLP  192
            QPC  CV +P  PPP  C       + CV        +   T      P  P+P    +P
Sbjct  417  QPCITCVTAPAPPPPQPC-------ITCVIAPASPPPQPCITCVAAPEPPPPQPCITCIP  469


>gi|110742286|dbj|BAE99068.1|  RSH1 [Arabidopsis thaliana]
Length=884

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query  43   LLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLPPK  198
            +L   +SC    R +L+CV  S + S+ A++ + +ETL  D  P+ + LP K
Sbjct  96   ILKSRLSCGGHKRWELYCV--SAESSSGASSDVTVETLWEDLFPSISYLPRK  145


>gi|42572809|ref|NP_974501.1|  RSH1 (RELA-SPOT HOMOLOG); ATP binding / catalytic [Arabidopsis 
thaliana]
Length=816

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query  43   LLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLPPK  198
            +L   +SC    R +L+CV  S + S+ A++ + +ETL  D  P+ + LP K
Sbjct  96   ILKSRLSCGGHKRWELYCV--SAESSSGASSDVTVETLWEDLFPSISYLPRK  145


>gi|42570124|ref|NP_849287.2|  RSH1 (RELA-SPOT HOMOLOG); ATP binding / catalytic [Arabidopsis 
thaliana]
Length=884

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query  43   LLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLPPK  198
            +L   +SC    R +L+CV  S + S+ A++ + +ETL  D  P+ + LP K
Sbjct  96   ILKSRLSCGGHKRWELYCV--SAESSSGASSDVTVETLWEDLFPSISYLPRK  145


>gi|18411893|ref|NP_567226.1|  RSH1 (RELA-SPOT HOMOLOG); ATP binding / catalytic [Arabidopsis 
thaliana]
 gi|7141304|gb|AAF37281.1|  RSH1 [Arabidopsis thaliana]
Length=883

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query  43   LLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLPPK  198
            +L   +SC    R +L+CV  S + S+ A++ + +ETL  D  P+ + LP K
Sbjct  96   ILKSRLSCGGHKRWELYCV--SAESSSGASSDVTVETLWEDLFPSISYLPRK  145


>gi|115463995|ref|NP_001055597.1|  Os05g0425600 [Oryza sativa (japonica cultivar-group)]
 gi|53980860|gb|AAV24781.1|  unknow protein [Oryza sativa (japonica cultivar-group)]
 gi|53981727|gb|AAV25004.1|  unknow protein [Oryza sativa (japonica cultivar-group)]
 gi|113579148|dbj|BAF17511.1|  Os05g0425600 [Oryza sativa (japonica cultivar-group)]
Length=103

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
 Frame = +1

Query  31   VRSPLLPPPISCNFFSRLQLFCVXDSRKM------SAEAAATMEIETLPSDP  168
            +RSPL PPP+ C  F      C   S         S+     M +  +PS P
Sbjct  18   IRSPLPPPPLFCRLFPSSLFLCTAASSSRSPPSNDSSAGEVVMSVNHVPSPP  69


>gi|45476984|sp|Q9SHS7|BSL3_ARATH  Serine/threonine-protein phosphatase BSL3 (BSU1-like protein 
3)
 gi|4646217|gb|AAD26883.1|  putative phosphoprotein phosphatase [Arabidopsis thaliana]
Length=715

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 0/46 (0%)
 Frame = -1

Query  212  GSNFSFGGNELNAGLGSEGNVSISMVAAASADIFLLSXTQNSWSLL  75
            G   +  GN    G  +  NVS + +A A+AD+       N WS L
Sbjct  98   GGATALEGNSGGTGTPTSSNVSYAGLAGATADVHCYDVLSNKWSRL  143


>gi|115439815|ref|NP_001044187.1|  Os01g0738300 [Oryza sativa (japonica cultivar-group)]
 gi|57899475|dbj|BAD86936.1|  putative receptor protein kinase PERK1 [Oryza sativa (japonica 
cultivar-group)]
 gi|57900576|dbj|BAD87028.1|  putative receptor protein kinase PERK1 [Oryza sativa (japonica 
cultivar-group)]
 gi|113533718|dbj|BAF06101.1|  Os01g0738300 [Oryza sativa (japonica cultivar-group)]
Length=671

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query  16   PCCRCVRSPLLPPPISCNFFSRLQLFCVXDSRKMSAEAAATMEIETLPSDPKPAFNSLPP  195
            P C    S   PPP+S ++ S         +  +S+    +   E+ PS P PA +  PP
Sbjct  40   PACPYSSSSSSPPPVSASYHSWPP---ATSASPVSSPPPVSSPPESFPSSPPPALSPPPP  96


>gi|115450299|ref|NP_001048750.1|  Os03g0115200 [Oryza sativa (japonica cultivar-group)]
 gi|108705847|gb|ABF93642.1|  YOR3513c, putative, expressed [Oryza sativa (japonica cultivar-group)]
 gi|113547221|dbj|BAF10664.1|  Os03g0115200 [Oryza sativa (japonica cultivar-group)]
Length=227

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = +2

Query  227  EMSDG*VQFRKGLRSTS*VSPLKKYWMDI  313
            EMS G  QFRK        +PLKK WMDI
Sbjct  42   EMSGGRPQFRKVPVPQHRFAPLKKAWMDI  70


>gi|27476101|gb|AAO17032.1|  Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=206

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = +2

Query  227  EMSDG*VQFRKGLRSTS*VSPLKKYWMDI  313
            EMS G  QFRK        +PLKK WMDI
Sbjct  21   EMSGGRPQFRKVPVPQHRFAPLKKAWMDI  49


>gi|20160828|dbj|BAB89768.1|  putative partner of Nob1 [Oryza sativa (japonica cultivar-group)]
 gi|20161192|dbj|BAB90119.1|  putative partner of Nob1 [Oryza sativa (japonica cultivar-group)]
Length=220

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = +2

Query  227  EMSDG*VQFRKGLRSTS*VSPLKKYWMDI  313
            EMS G  QFRK        +PLKK WMDI
Sbjct  35   EMSGGRPQFRKVPVPQHRFAPLKKAWMDI  63


>gi|33669476|gb|AAQ24835.1|  partner of Nob1 [Sorghum bicolor]
Length=202

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query  179  SIHCPQS*SLSP*KAHEMSDG*VQFRKGLRSTS*VSPLKKYWMDI  313
            ++  PQ  +L P    EMS G  QFRK        +PLK+ WM+I
Sbjct  22   AVEKPQFDALMP---SEMSGGRPQFRKVTVPQHRFAPLKRCWMEI  63


>gi|115473023|ref|NP_001060110.1|  Os07g0582700 [Oryza sativa (japonica cultivar-group)]
 gi|34393633|dbj|BAC83313.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113611646|dbj|BAF22024.1|  Os07g0582700 [Oryza sativa (japonica cultivar-group)]
Length=171

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
 Frame = +1

Query  28   CVRSPLLPPPISCNFFSRLQL----FCVXDSRKMSAEAAATMEIETLPSDPKP  174
            C   P LPPP SC    R +L     C+  +   SA       +   P  P P
Sbjct  85   CCLLPRLPPPASCYHLRRCELRRSETCLAMTSASSASRRTAPRVPPPPESPAP  137

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 16, 2007  5:53 PM
  Number of letters in database: 101,065,385
  Number of sequences in database:  283,397
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283397
Number of Hits to DB: 235
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 314
Length of database: 101065385
Length adjustment: 73
Effective length of query: 241
Effective length of database: 80377404
Effective search space: 2491699524
Effective search space used: 2491699524
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)