Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929500-4996-33458870108.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig110 Length=327
Score E Sequences producing significant alignments: (Bits) Value gi|6714472|gb|AAF26158.1|AC008261_15 hypothetical protein [Arabi 39.7 0.003 gi|15529202|gb|AAK97695.1| AT3g01160/T4P13_15 [Arabidopsis th... 39.7 0.003 gi|13936308|gb|AAK40307.1| putative methyl-binding domain protei 38.1 0.009 gi|56784842|dbj|BAD82082.1| cytosolic factor-like protein [Or... 37.4 0.016 gi|115441357|ref|NP_001044958.1| Os01g0874700 [Oryza sativa (... 37.4 0.016 gi|42600550|dbj|BAD11133.1| glutamate-rich protein [Lotus japoni 36.6 0.027 gi|110740326|dbj|BAF02058.1| hypothetical protein [Arabidopsis t 36.2 0.036 gi|37788142|gb|AAP57707.1| glutamic acid-rich protein [Manihot e 36.2 0.036 gi|24417370|gb|AAN60295.1| unknown [Arabidopsis thaliana] 36.2 0.036 gi|13936310|gb|AAK40308.1| putative methyl-binding domain protei 36.2 0.036 gi|18394229|ref|NP_563971.1| MBD10; DNA binding [Arabidopsis ... 36.2 0.036 gi|39653215|gb|AAR29265.1| pollen-specific lysine-rich protein S 35.8 0.047 gi|116059899|emb|CAL55958.1| rRNA processing protein Rrp5 (ISS) 35.4 0.061 gi|115454387|ref|NP_001050794.1| Os03g0652000 [Oryza sativa (... 35.4 0.061 gi|115454007|ref|NP_001050604.1| Os03g0596900 [Oryza sativa (... 35.4 0.061 gi|31712089|gb|AAP68393.1| putative phosphoribosyltransferase... 35.4 0.061 gi|28875973|gb|AAO59982.1| unknown protein [Oryza sativa (japoni 35.4 0.061 gi|115464035|ref|NP_001055617.1| Os05g0429400 [Oryza sativa (... 35.0 0.080 gi|15228607|ref|NP_187018.1| unknown protein [Arabidopsis tha... 35.0 0.080 gi|15226357|ref|NP_178289.1| unknown protein [Arabidopsis tha... 34.7 0.10 gi|92871489|gb|ABE80468.1| Heavy metal transport/detoxificati... 34.3 0.14 gi|115444653|ref|NP_001046106.1| Os02g0184100 [Oryza sativa (... 34.3 0.14 gi|30681829|ref|NP_850032.1| unknown protein [Arabidopsis thalia 33.9 0.18 gi|15232634|ref|NP_188179.1| unknown protein [Arabidopsis thalia 33.9 0.18 gi|11994227|dbj|BAB01349.1| En/Spm-like transposon protein-like 33.9 0.18 gi|15238294|ref|NP_201296.1| unknown protein [Arabidopsis tha... 33.9 0.18 gi|115481516|ref|NP_001064351.1| Os10g0324900 [Oryza sativa (... 33.5 0.23 gi|113013692|gb|ABI29877.1| unknown [Salvia miltiorrhiza] 33.5 0.23 gi|92886350|gb|ABE88275.1| hypothetical protein MtrDRAFT_AC14... 33.5 0.23 gi|92877010|gb|ABE84260.1| conserved hypothetical protein [Medic 33.5 0.23 gi|15217223|gb|AAK92567.1|AC074354_1 Putative polycomb protein [ 33.5 0.23 gi|110810411|sp|Q339W7|LHP1_ORYSA Probable protein LIKE HETER... 33.5 0.23 gi|4587683|gb|AAD25853.1| hypothetical protein [Arabidopsis thal 33.1 0.30 gi|21536659|gb|AAM60991.1| unknown [Arabidopsis thaliana] 33.1 0.30 gi|27754505|gb|AAO22700.1| putative copper chaperone (CCH) prote 33.1 0.30 gi|77552544|gb|ABA95341.1| Plant invertase/pectin methylester... 33.1 0.30 gi|42569025|ref|NP_179030.2| unknown protein [Arabidopsis thalia 33.1 0.30 gi|30688581|ref|NP_197657.2| HD2B (HISTONE DEACETYLASE 2B) [Arab 33.1 0.30 gi|15232252|ref|NP_189409.1| unknown protein [Arabidopsis thalia 33.1 0.30 gi|18405728|ref|NP_564713.1| metal ion binding [Arabidopsis t... 33.1 0.30 gi|30688577|ref|NP_851056.1| HD2B (HISTONE DEACETYLASE 2B) [A... 33.1 0.30 gi|52220869|ref|YP_087024.1| ycf1 protein [Panax ginseng] >gi... 32.7 0.40 gi|12322384|gb|AAG51216.1|AC051630_13 mutator transposase MUD... 32.7 0.40 gi|18422461|ref|NP_568636.1| unknown protein [Arabidopsis tha... 32.7 0.40 gi|15236866|ref|NP_191967.1| unknown protein [Arabidopsis tha... 32.7 0.40 gi|116310088|emb|CAH67109.1| H0818E04.26 [Oryza sativa (indic... 32.3 0.52 gi|116000527|emb|CAL50207.1| unnamed protein product [Ostreococc 32.3 0.52 gi|4585911|gb|AAD25572.1| hypothetical protein [Arabidopsis thal 32.3 0.52 gi|15229884|ref|NP_187157.1| DNA binding [Arabidopsis thalian... 32.3 0.52 gi|15228477|ref|NP_189519.1| unknown protein [Arabidopsis tha... 32.3 0.52 gi|8096269|dbj|BAA95789.1| KED [Nicotiana tabacum] 32.3 0.52 gi|30684391|ref|NP_188341.2| unknown protein [Arabidopsis tha... 32.3 0.52 gi|11994246|dbj|BAB01421.1| unnamed protein product [Arabidopsis 32.3 0.52 gi|2317676|dbj|BAA21761.1| declined protein during seed developm 32.3 0.52 gi|116060829|emb|CAL57307.1| unnamed protein product [Ostreococc 32.0 0.68 gi|110738561|dbj|BAF01206.1| hypothetical protein [Arabidopsis t 32.0 0.68 gi|21537135|gb|AAM61476.1| unknown [Arabidopsis thaliana] 32.0 0.68 gi|16648923|gb|AAL24313.1| Unknown protein [Arabidopsis thaliana 32.0 0.68 gi|42568737|ref|NP_201160.2| unknown protein [Arabidopsis tha... 32.0 0.68 gi|15226163|ref|NP_178820.1| unknown protein [Arabidopsis tha... 32.0 0.68 gi|15223583|ref|NP_176058.1| unknown protein [Arabidopsis tha... 32.0 0.68 gi|15242667|ref|NP_198850.1| unknown protein [Arabidopsis tha... 32.0 0.68 gi|108709251|gb|ABF97046.1| retrotransposon protein, putative... 31.6 0.88 gi|108707048|gb|ABF94843.1| retrotransposon protein, putative... 31.6 0.88 gi|31126659|gb|AAP44582.1| putative reverse transcriptase [Or... 31.6 0.88 gi|18397066|ref|NP_565354.1| unknown protein [Arabidopsis tha... 31.6 0.88 gi|11066137|gb|AAG28473.1|AF195546_1 putative histone deacety... 31.6 0.88 gi|116058467|emb|CAL53656.1| unnamed protein product [Ostreococc 31.2 1.2 gi|115481262|ref|NP_001064224.1| Os10g0167500 [Oryza sativa (... 31.2 1.2 gi|115473999|ref|NP_001060598.1| Os07g0671400 [Oryza sativa (... 31.2 1.2 gi|115434074|ref|NP_001041795.1| Os01g0109700 [Oryza sativa (... 31.2 1.2 gi|110741193|dbj|BAF02147.1| hypothetical protein [Arabidopsis t 31.2 1.2 gi|41324092|gb|AAF03878.2|AF184710_1 maturase K [Tristaniopsis l 31.2 1.2 gi|37528882|gb|AAQ92371.1| radial spoke protein 2 [Chlamydomonas 31.2 1.2 gi|6671967|gb|AAF23226.1|AC013454_13 unknown protein [Arabido... 31.2 1.2 gi|7340659|emb|CAB82939.1| histone deacetylase-like protein [Ara 31.2 1.2 gi|42568946|ref|NP_178574.2| unknown protein [Arabidopsis thalia 31.2 1.2 gi|30680179|ref|NP_195994.2| HD2C (HISTONE DEACETYLASE 2C); n... 31.2 1.2 gi|30679640|ref|NP_187241.2| unknown protein [Arabidopsis thalia 31.2 1.2 gi|22655766|gb|AAN04183.1| Hypothetical protein [Oryza sativa... 31.2 1.2 gi|52076211|dbj|BAD44865.1| transcriptional co-repressor -lik... 31.2 1.2 gi|33146848|dbj|BAC79843.1| copper chaperone (CCH)-related pr... 31.2 1.2 gi|73919942|sp|Q9LZR5|HD2C_ARATH Histone deacetylase 2c (HD-t... 31.2 1.2 gi|115477395|ref|NP_001062293.1| Os08g0525700 [Oryza sativa (... 31.2 1.2 gi|12328480|dbj|BAB21140.1| hypothetical protein [Oryza sativ... 31.2 1.2 gi|115470729|ref|NP_001058963.1| Os07g0164800 [Oryza sativa (... 31.2 1.2 gi|110738087|dbj|BAF00977.1| T24D18.4 [Arabidopsis thaliana] 30.8 1.5 gi|108706775|gb|ABF94570.1| Cyclin, N-terminal domain contain... 30.8 1.5 gi|115441743|ref|NP_001045151.1| Os01g0909500 [Oryza sativa (... 30.8 1.5 gi|15222009|ref|NP_175322.1| nucleic acid binding [Arabidopsi... 30.8 1.5 gi|30684623|ref|NP_173046.2| unknown protein [Arabidopsis tha... 30.8 1.5 gi|34394194|dbj|BAC84646.1| hypothetical protein [Oryza sativa ( 30.8 1.5 gi|7406667|emb|CAB85627.1| putative ripening-related protein [Vi 30.8 1.5 gi|30692108|ref|NP_849520.1| DNA binding / transcription fact... 30.4 2.0 gi|4038062|gb|AAC97243.1| Mutator-like transposase [Arabidops... 30.4 2.0 gi|19423874|gb|AAL87314.1| unknown protein [Arabidopsis thaliana 30.4 2.0 gi|15236460|ref|NP_192571.1| unknown protein [Arabidopsis tha... 30.4 2.0 gi|15234865|ref|NP_195601.1| DNA binding / transcription fact... 30.4 2.0 gi|7767661|gb|AAF69158.1|AC007915_10 F27F5.15 [Arabidopsis thali 30.4 2.0 gi|168526|gb|AAA33486.1| nucleic acid-binding protein 30.4 2.0
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 283 Number of extensions: 6 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 327 Length of database: 101054579 Length adjustment: 77 Effective length of query: 250 Effective length of database: 79236706 Effective search space: 2535574592 Effective search space used: 2535574592 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)