Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929521-6394-154065408447.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig111 Length=223
Score E Sequences producing significant alignments: (Bits) Value gi|45935145|gb|AAS79603.1| prephenate dehydratase [Ipomoea tr... 150 1e-36 gi|18390869|ref|NP_563809.1| prephenate dehydratase [Arabidop... 149 2e-36 gi|15226259|ref|NP_180350.1| prephenate dehydratase [Arabidop... 149 4e-36 gi|21593283|gb|AAM65232.1| putative chorismate mutase/prephen... 149 4e-36 gi|115480717|ref|NP_001063952.1| Os09g0566000 [Oryza sativa (... 146 2e-35 gi|115480713|ref|NP_001063950.1| Os09g0565700 [Oryza sativa (... 146 2e-35 gi|52076148|dbj|BAD46661.1| putative prephenate dehydratase [... 146 2e-35 gi|15230489|ref|NP_190058.1| prephenate dehydratase [Arabidop... 145 3e-35 gi|116309442|emb|CAH66515.1| OSIGBa0142C11.3 [Oryza sativa (indi 144 7e-35 gi|115458232|ref|NP_001052716.1| Os04g0406600 [Oryza sativa (... 144 7e-35 gi|70664005|emb|CAE04886.3| OSJNBa0042I15.8 [Oryza sativa (japon 144 7e-35 gi|15242928|ref|NP_197655.1| prephenate dehydratase [Arabidop... 143 2e-34 gi|79317657|ref|NP_001031024.1| prephenate dehydratase [Arabidop 127 9e-30 gi|15221096|ref|NP_172644.1| amino acid binding / prephenate ... 127 9e-30 gi|92887942|gb|ABE89101.1| Prephenate dehydratase with ACT regio 125 6e-29 gi|14596233|gb|AAK68844.1| Unknown protein [Arabidopsis thali... 125 6e-29 gi|115452343|ref|NP_001049772.1| Os03g0286200 [Oryza sativa (... 122 5e-28 gi|92873068|gb|ABE81566.1| Prephenate dehydratase with ACT regio 122 5e-28 gi|21537054|gb|AAM61395.1| putative P-protein: chorismate mut... 119 3e-27 gi|15231489|ref|NP_187420.1| amino acid binding / prephenate ... 119 3e-27 gi|115474283|ref|NP_001060740.1| Os07g0694600 [Oryza sativa (... 118 6e-27 gi|55792532|gb|AAV65362.1| plastid prephenate dehydratase [Proto 109 3e-24 gi|115472333|ref|NP_001059765.1| Os07g0512000 [Oryza sativa (... 91.3 9e-19 gi|50509492|dbj|BAD31173.1| putative chorismate mutase/prephe... 91.3 9e-19 gi|116000356|emb|CAL50036.1| Prephenate dehydratase (ISS) [Ostre 89.4 4e-18 gi|113205235|gb|AAT39307.2| prephenate dehydratase family prote 87.0 2e-17 gi|115483020|ref|NP_001065103.1| Os10g0523700 [Oryza sativa (... 78.2 8e-15 gi|110738724|dbj|BAF01286.1| putative chorismate mutase/preph... 73.2 3e-13 gi|25553696|dbj|BAC24940.1| hypothetical protein [Oryza sativa ( 66.6 2e-11 gi|75755794|gb|ABA26957.1| TO6-1 [Taraxacum officinale] 49.3 4e-06 gi|22093816|dbj|BAC07103.1| hypothetical protein [Oryza sativ... 28.5 7.5
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 117 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 223 Length of database: 101054579 Length adjustment: 45 Effective length of query: 178 Effective length of database: 88303874 Effective search space: 2560812346 Effective search space used: 2560812346 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)