RID=1168929592-7570-198682045038.BLASTQ1, Contig113

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168929592-7570-198682045038.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig113
Length=481

Distribution of 12 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115463659|ref|NP_001055429.1|  Os05g0388500 [Oryza sativa (...   144    2e-34 
gi|75311086|sp|Q9LE95|RK1_SPIOL  50S ribosomal protein L1, chl...   142    7e-34
gi|7572940|emb|CAA62364.1|  L1 protein [Arabidopsis thaliana]       135    7e-32
gi|42572781|ref|NP_974486.1|  RNA binding / structural constit...   135    7e-32 
gi|15229443|ref|NP_191908.1|  RNA binding / structural constit...   135    7e-32 
gi|1350625|sp|P49208|RK1_PEA  50S ribosomal protein L1, chloro...   130    2e-30
gi|116060894|emb|CAL57372.1|  50S ribosomal protein L1 (ISS) [Ost  48.1    1e-05
gi|4512681|gb|AAD21735.1|  hypothetical protein [Arabidopsis t...  42.4    8e-04
gi|30689119|ref|NP_850375.1|  RNA binding / structural constit...  42.4    8e-04 
gi|19920112|gb|AAM08544.1|AC079935_16  Hypothetical protein wi...  30.8    2.4   
gi|92877258|gb|ABE84421.1|  hypothetical protein MtrDRAFT_AC12...  30.0    4.1  
gi|71912269|gb|AAZ53206.1|  AG2 [Eschscholzia californica]         28.9    9.0

Alignments

 

>gi|115463659|ref|NP_001055429.1|  Os05g0388500 [Oryza sativa (japonica cultivar-group)]
 gi|54287599|gb|AAV31343.1|  putative chloroplast ribosomal protein L1 [Oryza sativa (japonica 
cultivar-group)]
 gi|113578980|dbj|BAF17343.1|  Os05g0388500 [Oryza sativa (japonica cultivar-group)]
Length=359

 Score =  144 bits (362),  Expect = 2e-34
 Identities = 69/81 (85%), Positives = 79/81 (97%), Gaps = 0/81 (0%)
 Frame = +3

Query  237  LPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYN  416
            LPLKRDRTRSKRFLEIQKLRE+KKE+D+ TAISL+K+M SA+FVESAEAHFR+N+DPKYN
Sbjct  117  LPLKRDRTRSKRFLEIQKLRESKKEHDVPTAISLVKQMASARFVESAEAHFRMNLDPKYN  176

Query  417  DQQLRATVNLPKGTGQTVKVA  479
            DQQLRATVNLPKGTGQ+VK+A
Sbjct  177  DQQLRATVNLPKGTGQSVKIA  197


>gi|75311086|sp|Q9LE95|RK1_SPIOL  50S ribosomal protein L1, chloroplast precursor (CL1)
 gi|7414578|emb|CAA54255.1|  ribosomal protein L1 [Spinacia oleracea]
Length=352

 Score =  142 bits (357),  Expect = 7e-34
 Identities = 69/81 (85%), Positives = 78/81 (96%), Gaps = 0/81 (0%)
 Frame = +3

Query  237  LPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYN  416
            LPLK DRTRSKRFLEIQKLRE K+EYDLKTA+SL+K+M+S KFVE+AEAHFRLNIDPKYN
Sbjct  110  LPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYN  169

Query  417  DQQLRATVNLPKGTGQTVKVA  479
            DQQLRATV+LPKGTG+TVK+A
Sbjct  170  DQQLRATVSLPKGTGKTVKIA  190


>gi|7572940|emb|CAA62364.1|  L1 protein [Arabidopsis thaliana]
Length=346

 Score =  135 bits (340),  Expect = 7e-32
 Identities = 68/81 (83%), Positives = 73/81 (90%), Gaps = 0/81 (0%)
 Frame = +3

Query  237  LPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYN  416
            L LKRDRTRSKRFLEIQKLRE KKEYD+ TAISLLK+  + +FVES EAHFRLNIDPKYN
Sbjct  104  LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN  163

Query  417  DQQLRATVNLPKGTGQTVKVA  479
            DQQLRATV+LPKGTGQTV VA
Sbjct  164  DQQLRATVSLPKGTGQTVIVA  184


>gi|42572781|ref|NP_974486.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
Length=291

 Score =  135 bits (340),  Expect = 7e-32
 Identities = 68/81 (83%), Positives = 73/81 (90%), Gaps = 0/81 (0%)
 Frame = +3

Query  237  LPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYN  416
            L LKRDRTRSKRFLEIQKLRE KKEYD+ TAISLLK+  + +FVES EAHFRLNIDPKYN
Sbjct  104  LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN  163

Query  417  DQQLRATVNLPKGTGQTVKVA  479
            DQQLRATV+LPKGTGQTV VA
Sbjct  164  DQQLRATVSLPKGTGQTVIVA  184


>gi|15229443|ref|NP_191908.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
 gi|75311693|sp|Q9LY66|RK1_ARATH  50S ribosomal protein L1, chloroplast precursor (CL1)
 gi|7573332|emb|CAB87802.1|  chloroplast ribosomal L1-like protein [Arabidopsis thaliana]
 gi|15450737|gb|AAK96640.1|  AT3g63490/MAA21_120 [Arabidopsis thaliana]
 gi|16649119|gb|AAL24411.1|  chloroplast ribosomal L1-like protein [Arabidopsis thaliana]
 gi|22137008|gb|AAM91349.1|  At3g63490/MAA21_120 [Arabidopsis thaliana]
 gi|24899727|gb|AAN65078.1|  chloroplast ribosomal L1-like protein [Arabidopsis thaliana]
Length=346

 Score =  135 bits (340),  Expect = 7e-32
 Identities = 68/81 (83%), Positives = 73/81 (90%), Gaps = 0/81 (0%)
 Frame = +3

Query  237  LPLKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYN  416
            L LKRDRTRSKRFLEIQKLRE KKEYD+ TAISLLK+  + +FVES EAHFRLNIDPKYN
Sbjct  104  LVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYN  163

Query  417  DQQLRATVNLPKGTGQTVKVA  479
            DQQLRATV+LPKGTGQTV VA
Sbjct  164  DQQLRATVSLPKGTGQTVIVA  184


>gi|1350625|sp|P49208|RK1_PEA  50S ribosomal protein L1, chloroplast precursor (CL1)
 gi|577089|emb|CAA58020.1|  chloroplast ribosomal protein L1 [Pisum sativum]
Length=208

 Score =  130 bits (328),  Expect = 2e-30
 Identities = 65/79 (82%), Positives = 70/79 (88%), Gaps = 0/79 (0%)
 Frame = +3

Query  243  LKRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYNDQ  422
            LK DR RSKRFLEIQKLRE KKEYDLKTAISL+KE    KFVE+ EAHFRLNIDPKYNDQ
Sbjct  50   LKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQ  109

Query  423  QLRATVNLPKGTGQTVKVA  479
            QLRATV+LPKGTG+ +KVA
Sbjct  110  QLRATVSLPKGTGKPIKVA  128


>gi|116060894|emb|CAL57372.1|  50S ribosomal protein L1 (ISS) [Ostreococcus tauri]
Length=304

 Score = 48.1 bits (113),  Expect = 1e-05
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query  297  ENKKEYDLKTAISLLK-EMTSAKFVESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVK  473
            E +  + L  A+  +K    S +FVES E    L +DPK +D  +R  V LP GTG+TV+
Sbjct  74   ERRPTHGLLDAVRWVKANAKSERFVESVELAVHLGVDPKRSDMIVRGAVRLPNGTGKTVR  133

Query  474  VA  479
            VA
Sbjct  134  VA  135


>gi|4512681|gb|AAD21735.1|  hypothetical protein [Arabidopsis thaliana]
 gi|20198079|gb|AAM15388.1|  hypothetical protein [Arabidopsis thaliana]
Length=286

 Score = 42.4 bits (98),  Expect = 8e-04
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query  288  KLRENKKE-YDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ  464
            +L+  KK  +DL  AI  +K    AKF E+ EAH RL I+   ++  +R T+ LP    +
Sbjct  179  ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK  238

Query  465  TVKVA  479
             VKVA
Sbjct  239  DVKVA  243


>gi|30689119|ref|NP_850375.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
 gi|20268740|gb|AAM14073.1|  unknown protein [Arabidopsis thaliana]
 gi|21280899|gb|AAM45043.1|  unknown protein [Arabidopsis thaliana]
 gi|26451659|dbj|BAC42926.1|  unknown protein [Arabidopsis thaliana]
Length=415

 Score = 42.4 bits (98),  Expect = 8e-04
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query  288  KLRENKKE-YDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ  464
            +L+  KK  +DL  AI  +K    AKF E+ EAH RL I+   ++  +R T+ LP    +
Sbjct  179  ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK  238

Query  465  TVKVA  479
             VKVA
Sbjct  239  DVKVA  243


>gi|19920112|gb|AAM08544.1|AC079935_16  Hypothetical protein with similarity to putative retroelement 
[Oryza sativa]
 gi|31431695|gb|AAP53434.1|  hypothetical protein LOC_Os10g23110 [Oryza sativa (japonica cultivar-group)]
Length=1414

 Score = 30.8 bits (68),  Expect = 2.4
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query  261  RSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFR-LNIDPKYNDQQL-RA  434
            R+K F EI     NK      +  + ++E   A+F+ + E+H+R   +D  Y    + R 
Sbjct  158  RTKAFFEISGNASNKTSESSTSPRNEIQECIDARFLSTCESHWRAFELDIHYRMPSVERL  217

Query  435  TVNLP  449
            TV+LP
Sbjct  218  TVHLP  222


>gi|92877258|gb|ABE84421.1|  hypothetical protein MtrDRAFT_AC122168g19v1 [Medicago truncatula]
Length=80

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 0/41 (0%)
 Frame = +3

Query  324  TAISLLKEMTSAKFVESAEAHFRLNIDPKYNDQQLRATVNL  446
            T+ISL K++ +AK+ +S+   F+ NID  ++ Q  R  + +
Sbjct  14   TSISLPKQVGNAKWTKSSIGGFKCNIDASFSKQTNRVGIGV  54


>gi|71912269|gb|AAZ53206.1|  AG2 [Eschscholzia californica]
Length=236

 Score = 28.9 bits (63),  Expect = 9.0
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +3

Query  255  RTRSKR----FLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYND  419
            R RSK+    F EI+ ++  K+E DL+     L+   + K  E AE H RL    +YND
Sbjct  152  RIRSKKNELLFAEIELMQ--KREIDLQNHNMYLRSKIAEK--ERAEQHMRLTPGNEYND  206

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 237
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 481
Length of database: 101054579
Length adjustment: 104
Effective length of query: 377
Effective length of database: 71586283
Effective search space: 4008831848
Effective search space used: 4008831848
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)