Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930117-703-78685924742.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig127 Length=365
Score E Sequences producing significant alignments: (Bits) Value gi|55976189|sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 >gi|... 221 6e-58 gi|13359453|dbj|BAB33422.1| putative senescence-associated prote 213 1e-55 gi|77999273|gb|ABB16983.1| unknown [Solanum tuberosum] 212 3e-55 gi|21592804|gb|AAM64753.1| ribosomal protein, putative [Arabidop 211 6e-55 gi|18404552|ref|NP_566767.1| ATL5 (A. THALIANA RIBOSOMAL PROT... 211 6e-55 gi|15242467|ref|NP_198790.1| 5S rRNA binding / structural con... 211 6e-55 gi|115441607|ref|NP_001045083.1| Os01g0896800 [Oryza sativa (... 206 3e-53 gi|21952858|dbj|BAC06273.1| putative 60S ribosomal protein L5... 206 3e-53 gi|115441605|ref|NP_001045082.1| Os01g0896700 [Oryza sativa (... 204 1e-52 gi|56785264|dbj|BAD82173.1| putative ribosomal protein L5 [Or... 204 1e-52 gi|55976534|sp|Q8L4L4|RL52_ORYSA 60S ribosomal protein L5-2 >... 204 1e-52 gi|6094086|sp|O65353|RL5_HELAN 60S ribosomal protein L5 >gi|3... 144 1e-34 gi|6094085|sp|O22608|RL5_DUNSA 60S ribosomal protein L5 >gi|2... 144 1e-34 gi|116055139|emb|CAL57535.1| 60S ribosomal protein L5 (ISS) [Ost 128 7e-30 gi|3914771|sp|P93779|RL5_SOLME 60S ribosomal protein L5 >gi|1... 64.3 1e-10 gi|92892587|gb|ABE91305.1| NLI interacting factor-like phosph... 30.4 1.9 gi|34485804|gb|AAQ73284.1| NBS-LRR resistance gene-like protein 30.4 1.9 gi|30684152|ref|NP_568283.2| oxoglutarate:malate antiporter [... 30.0 2.5 gi|51507327|emb|CAH17550.1| beta-1,3-glucanase [Olea europaea] 28.9 5.7 gi|46948256|gb|AAT07082.1| resistance protein [Rosa roxburghii] 28.1 9.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 270 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 365 Length of database: 101054579 Length adjustment: 88 Effective length of query: 277 Effective length of database: 76119867 Effective search space: 2511955611 Effective search space used: 2511955611 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)