Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168930230-20033-92159164864.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig133 Length=517
Score E Sequences producing significant alignments: (Bits) Value gi|312160|emb|CAA51679.1| ubiquitin [Solanum lycopersicum] 228 3e-83 gi|1332579|emb|CAA66667.1| polyubiquitin [Pinus sylvestris] 231 5e-83 gi|902584|gb|AAC49013.1| polyubiquitin containing 7 ubiquitin mo 231 5e-83 gi|87240493|gb|ABD32351.1| Ubiquitin [Medicago truncatula] 231 5e-83 gi|248337|gb|AAB21993.1| polyubiquitin [Zea mays] >gi|248339|... 231 5e-83 gi|30680052|ref|NP_849299.1| UBQ10 (POLYUBIQUITIN 10); protei... 231 5e-83 gi|23397122|gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabi 231 5e-83 gi|3126967|gb|AAC16012.1| polyubiquitin [Elaeagnus umbellata] 231 5e-83 gi|418854|pir||S30151 polyubiquitin 6 - parsley >gi|288112|em... 231 5e-83 gi|18824|emb|CAA40324.1| hexaubiquitin protein [Helianthus an... 231 5e-83 gi|16660462|gb|AAL27564.1|AF429430_1 polyubiquitin OUB2 [Olea eu 231 5e-83 gi|4115337|gb|AAD03343.1| ubiquitin [Pisum sativum] 231 5e-83 gi|2760347|gb|AAB95251.1| ubiquitin [Arabidopsis thaliana] 231 5e-83 gi|170352|gb|AAA34123.1| hexameric polyubiquitin >gi|870792|g... 231 5e-83 gi|115444401|ref|NP_001045980.1| Os02g0161900 [Oryza sativa (... 231 5e-83 gi|1684855|gb|AAB36545.1| ubiquitin-like protein [Phaseolus vulg 231 5e-83 gi|115460714|ref|NP_001053957.1| Os04g0628100 [Oryza sativa (... 231 5e-83 gi|18412930|ref|NP_567291.1| UBQ10 (POLYUBIQUITIN 10); protei... 231 5e-83 gi|68160568|gb|AAY86773.1| polyubiquitin [Thlaspi caerulescens] 231 5e-83 gi|116312012|emb|CAJ86369.1| OSIGBa0117N13.13 [Oryza sativa (... 231 5e-83 gi|61223100|gb|AAX40652.1| polyubiquitin [Oryza sativa (japonica 231 5e-83 gi|15982787|gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thal 231 5e-83 gi|902586|gb|AAC49014.1| ubiquitin 231 5e-83 gi|4809266|gb|AAD30173.1|AF148448_1 polyubiquitin [Sporobolus... 231 5e-83 gi|899608|gb|AAC49025.1| polyubiquitin 231 5e-83 gi|2760349|gb|AAB95252.1| ubiquitin [Arabidopsis thaliana] 231 5e-83 gi|1800281|gb|AAB68045.1| polyubiquitin [Fragaria x ananassa] 231 5e-83 gi|33323472|gb|AAQ07453.1| ubiquitin [Musa acuminata] 231 5e-83 gi|39546234|emb|CAE04243.3| OSJNBa0089N06.4 [Oryza sativa (japon 231 5e-83 gi|20589|emb|CAA34886.1| unnamed protein product [Pisum sativ... 231 5e-83 gi|18420267|ref|NP_568397.1| UBQ4; protein binding [Arabidops... 231 5e-83 gi|170354|gb|AAA34124.1| pentameric polyubiquitin 231 5e-83 gi|602076|emb|CAA54603.1| pentameric polyubiquitin [Nicotiana ta 231 5e-83 gi|18803|emb|CAA40323.1| polyubiquitin protein [Helianthus annuu 231 5e-83 gi|42572839|ref|NP_974516.1| UBQ10 (POLYUBIQUITIN 10); protei... 231 5e-83 gi|16660459|gb|AAL27563.1|AF429429_1 polyubiquitin OUB1 [Olea eu 231 5e-83 gi|168304|gb|AAA33401.1| ubiquitin 231 5e-83 gi|53850091|emb|CAH59740.1| polyubiquitin [Plantago major] 231 5e-83 gi|30679945|ref|NP_851029.1| UBQ3 (POLYUBIQUITIN 3); protein ... 231 5e-83 gi|320608|pir||S28426 polyubiquitin 4 - wild oat >gi|15989|em... 231 5e-83 gi|18412077|ref|NP_567247.1| UBQ14; protein binding [Arabidop... 231 5e-83 gi|16071|emb|CAA48140.1| ubiquitin [Antirrhinum majus] 231 5e-83 gi|116060737|emb|CAL57215.1| Ubiquitin/60s ribosomal protein ... 231 5e-83 gi|28394784|gb|AAO42469.1| putative polyubiquitin [Arabidopsis l 231 5e-83 gi|226763|prf||1604470A poly-ubiquitin 231 5e-83 gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis t 231 5e-83 gi|30523391|gb|AAP31578.1| ubiquitin [Hevea brasiliensis] 231 5e-83 gi|53850089|emb|CAH59739.1| polyubiquitin [Plantago major] 231 5e-83 gi|35187449|gb|AAQ84316.1| fiber polyubiquitin [Gossypium barbad 231 5e-83 gi|28804499|dbj|BAC57955.1| polyubiquitin [Aster tripolium] 231 5e-83 gi|18412785|ref|NP_567286.1| UBQ11 (UBIQUITIN 11); protein bi... 231 5e-83 gi|6934302|gb|AAF31707.1|AF221858_1 polyubiquitin [Euphorbia esu 231 5e-83 gi|1684857|gb|AAB36546.1| polyubiquitin [Phaseolus vulgaris] 231 5e-83 gi|29836445|gb|AAM78180.1| putative polyubiquitin [Gossypium ... 231 5e-83 gi|2760345|gb|AAB95250.1| ubiquitin [Arabidopsis thaliana] 231 1e-82 gi|3603456|gb|AAC35858.1| polyubiquitin [Capsicum chinense] 229 1e-82 gi|3789942|gb|AAC67552.1| polyubiquitin [Saccharum hybrid cultiv 229 2e-82 gi|21592581|gb|AAM64530.1| ubiquitin homolog [Arabidopsis thalia 231 2e-82 gi|395295|emb|CAA52290.1| polyubiquitin [Volvox carteri f. nagar 228 4e-82 gi|28436483|gb|AAO43308.1| putative polyubiquitin [Arabidopsis t 228 4e-82 gi|2894304|emb|CAA11267.1| polyubiquitin [Nicotiana tabacum] 227 1e-81 gi|28436485|gb|AAO43309.1| putative polyubiquitin [Arabidopsis t 226 1e-81 gi|14596193|gb|AAK68824.1| Unknown protein [Arabidopsis thaliana 226 1e-81 gi|28436487|gb|AAO43310.1| putative polyubiquitin [Arabidopsis t 227 2e-81 gi|102655942|gb|AAY33920.2| polyubiquitin [Euphorbia characias] 227 2e-81 gi|433970|emb|CAA82268.1| polyubiquitin [Acetabularia peniculus] 224 3e-81 gi|28436479|gb|AAO43306.1| putative polyubiquitin [Arabidopsis t 226 3e-81 gi|2894308|emb|CAA11269.1| polyubiquitin [Nicotiana tabacum] 224 5e-81 gi|28436476|gb|AAO43305.1| putative polyubiquitin [Arabidopsis t 223 7e-81 gi|28436472|gb|AAO43303.1| putative polyubiquitin [Arabidopsis t 220 6e-80 gi|28436474|gb|AAO43304.1| putative polyubiquitin [Arabidopsis t 220 6e-80 gi|7439572|pir||T02358 ubiquitin homolog T8F5.13 - Arabidopsi... 220 6e-80 gi|15218646|ref|NP_176714.1| UBQ13 [Arabidopsis thaliana] 220 6e-80 gi|6118549|gb|AAF04147.1| ubiquitin precursor [Hevea brasiliensi 218 2e-79 gi|57282601|emb|CAD27944.1| polyubiquitin-like [Oryza sativa] 218 3e-79 gi|82512|pir||PS0380 ubiquitin precursor - rice (fragment) >g... 231 5e-79 gi|3789940|gb|AAC67551.1| tetra-ubiquitin [Saccharum hybrid cult 225 6e-79 gi|18405196|ref|NP_564675.1| UBQ12 (UBIQUITIN 12) [Arabidopsis t 224 1e-78 gi|18421671|ref|NP_568552.1| UBQ9 [Arabidopsis thaliana] >gi|... 212 2e-77 gi|110736490|dbj|BAF00213.1| polyubiquitin 4 UBQ4 [Arabidopsis t 209 1e-76 gi|115187323|gb|ABI84246.1| polyubiquitin 10 [Arachis hypogaea] 208 3e-76 gi|39939489|gb|AAR32784.1| polyubiquitin [Clusia minor] 231 2e-74 gi|71534894|gb|AAZ32851.1| pentameric polyubiquitin [Medicago sa 231 6e-71 gi|755763|emb|CAA27751.1| unnamed protein product [Hordeum vulga 231 9e-69 gi|18398638|ref|NP_566357.1| UBQ8 [Arabidopsis thaliana] >gi|... 187 1e-67 gi|17016983|gb|AAL33551.1|AF436850_1 polyubiquitin [Cucumis melo 183 8e-67 gi|111140007|gb|ABH06365.1| ubiquitin [Sorbus aucuparia] 221 7e-66 gi|3158372|gb|AAC39466.1| polyubiquitin [Arabidopsis thaliana] 191 1e-62 gi|70780322|gb|AAZ08412.1| polyubiquitin [Populus alba] 184 1e-61 gi|93278214|gb|ABF06579.1| polyubiquitin [Gladiolus grandiflorus 231 1e-60 gi|40287484|gb|AAR83856.1| hexameric polyubiquitin 6PU11 [Capsic 231 1e-60 gi|73747822|gb|AAZ82816.1| ubiquitin monomer protein [Morus mong 231 1e-60 gi|37542506|gb|AAL25813.1| polyubiquitin [Prunus avium] 229 3e-60 gi|89114278|gb|ABD61727.1| polyubiquitin [Lupinus albus] 172 3e-60 gi|61889379|emb|CAI51312.2| polyubiquitin [Capsicum chinense] 229 4e-60 gi|21554192|gb|AAM63271.1| unknown [Arabidopsis thaliana] 228 7e-60 gi|115469478|ref|NP_001058338.1| Os06g0673500 [Oryza sativa (... 223 2e-58 gi|52077254|dbj|BAD46297.1| pentameric polyubiquitin-like [Or... 223 2e-58 gi|6114876|dbj|BAA85750.1| polyubiquitin [Cucumis melo] 154 4e-58 gi|33327286|gb|AAQ08999.1| polyubiquitin 2 [Phaseolus vulgaris] 215 8e-56
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 997 Number of extensions: 25 Number of successful extensions: 10 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 9 Length of query: 517 Length of database: 101054579 Length adjustment: 105 Effective length of query: 412 Effective length of database: 71302934 Effective search space: 4777296578 Effective search space used: 4777296578 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)