Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168931328-17977-40785500564.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig163 Length=196
Score E Sequences producing significant alignments: (Bits) Value gi|92872596|gb|ABE81200.1| conserved hypothetical protein [Medic 85.5 5e-17 gi|18395162|ref|NP_564181.1| unknown protein [Arabidopsis tha... 75.9 4e-14 gi|30692973|ref|NP_174663.2| unknown protein [Arabidopsis tha... 65.1 7e-11 gi|2505872|emb|CAA72910.1| hypothetical protein [Arabidopsis tha 53.5 2e-07 gi|3287680|gb|AAC25508.1|AAC25508 T22J18.4 [Arabidopsis thaliana 53.5 2e-07 gi|42571885|ref|NP_974033.1| unknown protein [Arabidopsis tha... 48.9 5e-06 gi|10086475|gb|AAG12535.1|AC015446_16 Unknown protein [Arabidops 47.0 2e-05 gi|10092447|gb|AAG12850.1|AC079286_7 unknown protein; 15226-1472 47.0 2e-05 gi|53792252|dbj|BAD52885.1| light stress-responsive one-helix... 44.3 1e-04 gi|115438048|ref|NP_001043445.1| Os01g0589700 [Oryza sativa (... 43.9 2e-04 gi|115455889|ref|NP_001051545.1| Os03g0795100 [Oryza sativa (... 43.9 2e-04 gi|34394450|dbj|BAC83624.1| unknown protein [Oryza sativa (japon 43.1 3e-04 gi|79400459|ref|NP_187957.2| unknown protein [Arabidopsis thalia 41.2 0.001 gi|9280300|dbj|BAB01755.1| unnamed protein product [Arabidopsis 37.0 0.021 gi|15226104|ref|NP_180897.1| unknown protein [Arabidopsis tha... 35.8 0.047 gi|49389023|dbj|BAD26266.1| hypothetical protein [Oryza sativa ( 34.7 0.10 gi|115434834|ref|NP_001042175.1| Os01g0175700 [Oryza sativa (... 31.2 1.2 gi|115443781|ref|NP_001045670.1| Os02g0114700 [Oryza sativa (... 30.0 2.6 gi|87043768|gb|ABD16790.1| probable ATPase [Oenothera organensis 29.6 3.4 gi|62318648|dbj|BAD95120.1| hypothetical protein [Arabidopsis th 29.6 3.4 gi|22830968|dbj|BAC15832.1| hypothetical protein [Oryza sativa ( 29.6 3.4 gi|15230124|ref|NP_189092.1| transcription factor [Arabidopsi... 29.6 3.4 gi|2150000|gb|AAB58718.1| aleurone ribonuclease [Hordeum vulgare 29.3 4.4 gi|115442533|ref|NP_001045546.1| Os01g0973300 [Oryza sativa (... 28.5 7.5 gi|57899225|dbj|BAD87374.1| putative adaptor-related protein ... 28.5 7.5 gi|13877739|gb|AAK43947.1|AF370132_1 unknown protein [Arabidopsi 28.5 7.5 gi|51535190|dbj|BAD38163.1| NHL repeat-containing protein-lik... 28.5 7.5 gi|87043747|gb|ABD16775.1| probable ATPase [Clarkia lewisii] 28.1 9.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 115 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 196 Length of database: 101054579 Length adjustment: 37 Effective length of query: 159 Effective length of database: 90570666 Effective search space: 2535978648 Effective search space used: 2535978648 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)