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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168931509-28532-195775997835.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig173
Length=315

Distribution of 29 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|12372|emb|CAA33618.1|  unnamed protein product [Triticum aesti  30.0    2.5  
gi|41688710|sp|Q8MAJ0|RPOA_AEGUN  DNA-directed RNA polymerase ...  30.0    2.5  
gi|7388093|sp|P93964|RPOA_SECST  DNA-directed RNA polymerase a...  30.0    2.5  
gi|14017603|ref|NP_114289.1|  RNA polymerase alpha chain [Trit...  30.0    2.5   Gene info
gi|87162502|gb|ABD28297.1|  conserved hypothetical protein [Medic  29.6    3.3  
gi|22657270|gb|AAM97438.1|  RNA polymerase alpha subunit [Elym...  29.3    4.3  
gi|51859683|gb|AAU11121.1|  RNA polymerase alpha subunit [Psat...  29.3    4.3  
gi|22657314|gb|AAM97460.1|  RNA polymerase alpha subunit [Heteran  28.5    7.3  
gi|73747868|gb|AAZ82835.1|  RNA polymerase subunit a [Elymus dent  28.5    7.3  
gi|73747870|gb|AAZ82836.1|  RNA polymerase subunit a [Elymus muta  28.5    7.3  
gi|51859695|gb|AAU11127.1|  RNA polymerase alpha subunit [Psathyr  28.5    7.3  
gi|51859691|gb|AAU11125.1|  RNA polymerase alpha subunit [Psathyr  28.5    7.3  
gi|51859679|gb|AAU11119.1|  RNA polymerase alpha subunit [Psathyr  28.5    7.3  
gi|68053189|sp|Q7H6G1|RPOA_PSEPI  DNA-directed RNA polymerase ...  28.5    7.3  
gi|7388090|sp|P93956|RPOA_FESSE  DNA-directed RNA polymerase a...  28.5    7.3  
gi|3122775|sp|P92392|RPOA_HORVU  DNA-directed RNA polymerase a...  28.5    7.3  
gi|7388092|sp|P93962|RPOA_PSAST  DNA-directed RNA polymerase a...  28.5    7.3  
gi|41688708|sp|Q8MAI8|RPOA_ELYHY  DNA-directed RNA polymerase ...  28.5    7.3  
gi|7388080|sp|P93993|RPOA_AUSVE  DNA-directed RNA polymerase a...  28.5    7.3  
gi|68053188|sp|Q7H6F6|RPOA_PSAJU  DNA-directed RNA polymerase ...  28.5    7.3  
gi|3122776|sp|P92439|RPOA_THIBE  DNA-directed RNA polymerase a...  28.5    7.3  
gi|118430418|ref|YP_874684.1|  RNA polymerase alpha subunit [H...  28.5    7.3   Gene info
gi|2500619|sp|P92418|RPOA_PSAFR  DNA-directed RNA polymerase a...  28.5    7.3  
gi|7388079|sp|P92209|RPOA_AGRCR  DNA-directed RNA polymerase a...  28.5    7.3  
gi|7388094|sp|P93968|RPOA_FESFE  DNA-directed RNA polymerase a...  28.5    7.3  
gi|41688709|sp|Q8MAI9|RPOA_ELYCL  DNA-directed RNA polymerase ...  28.5    7.3  
gi|51859681|gb|AAU11120.1|  RNA polymerase alpha subunit [Psathyr  28.1    9.6  
gi|115473537|ref|NP_001060367.1|  Os07g0632600 [Oryza sativa (...  28.1    9.6   Gene info
gi|7388088|sp|P92225|RPOA_CRIDE  DNA-directed RNA polymerase a...  28.1    9.6
Alignments

>gi|12372|emb|CAA33618.1|  unnamed protein product [Triticum aestivum]
Length=339

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++ ASF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGASFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|41688710|sp|Q8MAJ0|RPOA_AEGUN  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|22657234|gb|AAM97420.1|  RNA polymerase alpha subunit [Aegilops uniaristata]
Length=339

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++ ASF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGASFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|7388093|sp|P93964|RPOA_SECST  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1771726|emb|CAB01374.1|  alpha subunit of RNA polymerase [Secale strictum]
Length=339

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++ ASF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGASFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|14017603|ref|NP_114289.1| Gene info RNA polymerase alpha chain [Triticum aestivum]
 gi|17380278|sp|P12073|RPOA_WHEAT Gene info DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053005|sp|P92892|RPOA_AEGSP  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053170|sp|Q6YLW2|RPOA_SECCE  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053185|sp|Q7GED0|RPOA_TAECM  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053186|sp|Q7GED9|RPOA_AEGCM  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1769857|emb|CAB01345.1|  alpha subunit of RNA polymerase [Amblyopyrum muticum]
 gi|1770118|emb|CAB01303.1|  alpha subunit of RNA polymerase [Aegilops comosa]
 gi|1770176|emb|CAB01348.1|  alpha subunit of RNA polymerase [Crithodium monococcum]
 gi|1771730|emb|CAB01375.1|  alpha subunit of RNA polymerase [Aegilops speltoides]
 gi|1771811|emb|CAB01357.1|  alpha subunit of RNA polymerase [Taeniatherum caput-medusae]
 gi|13928236|dbj|BAB47065.1| Gene info RNA polymerase alpha subunit [Triticum aestivum]
 gi|22657228|gb|AAM97417.1|  RNA polymerase alpha subunit [Aegilops markgrafii]
 gi|22657230|gb|AAM97418.1|  RNA polymerase alpha subunit [Aegilops speltoides]
 gi|22657332|gb|AAM97469.1|  RNA polymerase alpha subunit [Secale montanum]
 gi|22657334|gb|AAM97470.1|  RNA polymerase alpha subunit [Secale cereale]
 gi|22657336|gb|AAM97471.1|  RNA polymerase alpha subunit [Secale montanum]
 gi|22657338|gb|AAM97472.1|  RNA polymerase alpha subunit [Taeniatherum caput-medusae]
Length=339

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++ ASF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGASFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|87162502|gb|ABD28297.1|  conserved hypothetical protein [Medicago truncatula]
Length=654

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query  28   RELQKSASFSAKMEKFFQTRILSHG-SQNKNSLPLPCLKVQSHTTNSQQYHCLLKTSC  198
            R ++ + ++S K+E    T +     + N+ +LP+ CL+ ++  +N Q  H  L+  C
Sbjct  564  RPVELTGNYSDKLESHISTEVQCESKAANQVNLPVRCLQEENLRSNQQLSHIGLEDPC  621


>gi|22657270|gb|AAM97438.1|  RNA polymerase alpha subunit [Elymus canadensis]
 gi|22657294|gb|AAM97450.1|  RNA polymerase alpha subunit [Elymus virginicus]
 gi|22657296|gb|AAM97451.1|  RNA polymerase alpha subunit [Elymus virginicus]
 gi|22657298|gb|AAM97452.1|  RNA polymerase alpha subunit [Elymus virginicus]
Length=339

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNPKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|51859683|gb|AAU11121.1|  RNA polymerase alpha subunit [Psathyrostachys fragilis subsp. 
secaliformis]
Length=339

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIXIDQLELTSRTYNCLKRAN  291


>gi|22657314|gb|AAM97460.1|  RNA polymerase alpha subunit [Heteranthelium piliferum]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|73747868|gb|AAZ82835.1|  RNA polymerase subunit a [Elymus dentatus]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|73747870|gb|AAZ82836.1|  RNA polymerase subunit a [Elymus mutabilis]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|51859695|gb|AAU11127.1|  RNA polymerase alpha subunit [Psathyrostachys caduca]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|51859691|gb|AAU11125.1|  RNA polymerase alpha subunit [Psathyrostachys caduca]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|51859679|gb|AAU11119.1|  RNA polymerase alpha subunit [Psathyrostachys lanuginosa]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|68053189|sp|Q7H6G1|RPOA_PSEPI  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053190|sp|Q7H6I5|RPOA_ELYCA  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1769861|emb|CAB01378.1|  alpha subunit of RNA polymerase [Australopyrum retrofractum]
 gi|1770228|emb|CAB01300.1|  alpha subunit of RNA polymerase [Haynaldia villosa]
 gi|1770247|emb|CAB01316.1|  alpha subunit of RNA polymerase [Eremopyrum triticeum]
 gi|1770348|emb|CAB01321.1|  alpha subunit of RNA polymerase [Henrardia persica]
 gi|1771184|emb|CAB01306.1|  alpha subunit of RNA polymerase [Lophopyrum elongatum]
 gi|1771497|emb|CAB01309.1|  alpha subunit of RNA polymerase [Pseudoroegneria spicata]
 gi|1771501|emb|CAB01324.1|  alpha subunit of RNA polymerase [Peridictyon sanctum]
 gi|22657242|gb|AAM97424.1|  RNA polymerase alpha subunit [Australopyrum retrofractum]
 gi|22657244|gb|AAM97425.1|  RNA polymerase alpha subunit [Australopyrum velutinum]
 gi|22657264|gb|AAM97435.1|  RNA polymerase alpha subunit [Haynaldia villosa]
 gi|22657268|gb|AAM97437.1|  RNA polymerase alpha subunit [Elymus canadensis]
 gi|22657272|gb|AAM97439.1|  RNA polymerase alpha subunit [Elymus canadensis]
 gi|22657274|gb|AAM97440.1|  RNA polymerase alpha subunit [Elymus ciliaris]
 gi|22657276|gb|AAM97441.1|  RNA polymerase alpha subunit [Elymus elymoides]
 gi|22657278|gb|AAM97442.1|  RNA polymerase alpha subunit [Elymus glaucus]
 gi|22657280|gb|AAM97443.1|  RNA polymerase alpha subunit [Elymus glaucus]
 gi|22657282|gb|AAM97444.1|  RNA polymerase alpha subunit [Elymus glaucus]
 gi|22657286|gb|AAM97446.1|  RNA polymerase alpha subunit [Elymus lanceolatus]
 gi|22657288|gb|AAM97447.1|  RNA polymerase alpha subunit [Elymus lanceolatus]
 gi|22657290|gb|AAM97448.1|  RNA polymerase alpha subunit [Elymus trachycaulus]
 gi|22657292|gb|AAM97449.1|  RNA polymerase alpha subunit [Elymus trachycaulus]
 gi|22657300|gb|AAM97453.1|  RNA polymerase alpha subunit [Elymus wawawaiensis]
 gi|22657302|gb|AAM97454.1|  RNA polymerase alpha subunit [Elymus wawawaiensis]
 gi|22657304|gb|AAM97455.1|  RNA polymerase alpha subunit [Eremopyrum bonaepartis]
 gi|22657306|gb|AAM97456.1|  RNA polymerase alpha subunit [Eremopyrum bonaepartis]
 gi|22657310|gb|AAM97458.1|  RNA polymerase alpha subunit [Eremopyrum orientale]
 gi|22657312|gb|AAM97459.1|  RNA polymerase alpha subunit [Henrardia persica]
 gi|22657316|gb|AAM97461.1|  RNA polymerase alpha subunit [Peridictyon sanctum]
 gi|22657318|gb|AAM97462.1|  RNA polymerase alpha subunit [Pseudoroegneria strigosa]
 gi|22657320|gb|AAM97463.1|  RNA polymerase alpha subunit [Pseudoroegneria strigosa]
 gi|22657322|gb|AAM97464.1|  RNA polymerase alpha subunit [Pseudoroegneria libanotica]
 gi|22657324|gb|AAM97465.1|  RNA polymerase alpha subunit [Pseudoroegneria spicata]
 gi|22657326|gb|AAM97466.1|  RNA polymerase alpha subunit [Pseudoroegneria spicata]
 gi|22657328|gb|AAM97467.1|  RNA polymerase alpha subunit [Pseudoroegneria spicata]
 gi|22657330|gb|AAM97468.1|  RNA polymerase alpha subunit [Pseudoroegneria spicata]
 gi|34329585|gb|AAQ63942.1|  RNA polymerase alpha subunit [Elymus repens]
 gi|34329587|gb|AAQ63943.1|  RNA polymerase alpha subunit [Elymus repens]
 gi|34329589|gb|AAQ63944.1|  RNA polymerase alpha subunit [Elymus repens]
 gi|34329591|gb|AAQ63945.1|  RNA polymerase alpha subunit [Elymus repens]
 gi|34329593|gb|AAQ63946.1|  RNA polymerase alpha subunit [Elymus repens]
 gi|34329595|gb|AAQ63947.1|  RNA polymerase alpha subunit [Elymus repens]
 gi|73747864|gb|AAZ82833.1|  RNA polymerase subunit a [Elymus abolinii]
 gi|73747866|gb|AAZ82834.1|  RNA polymerase subunit a [Elymus caucasicus]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|7388090|sp|P93956|RPOA_FESSE  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1770282|emb|CAB01778.1|  alpha subunit of RNA polymerase [Festucopsis serpentini]
 gi|22657262|gb|AAM97434.1|  RNA polymerase alpha subunit [Haynaldia villosa]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|3122775|sp|P92392|RPOA_HORVU  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1771084|emb|CAB01369.1|  alpha subunit of RNA polymerase [Hordeum vulgare subsp. spontaneum]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|7388092|sp|P93962|RPOA_PSAST  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1771505|emb|CAB01339.1|  alpha subunit of RNA polymerase [Psathyrostachys stoloniformis]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|41688708|sp|Q8MAI8|RPOA_ELYHY  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|22657284|gb|AAM97445.1|  RNA polymerase alpha subunit [Elymus hystrix]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|7388080|sp|P93993|RPOA_AUSVE  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1769912|emb|CAB01381.1|  alpha subunit of RNA polymerase [Australopyrum velutinum]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|68053188|sp|Q7H6F6|RPOA_PSAJU  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1770335|emb|CAB01363.1|  alpha subunit of RNA polymerase [Hordeum murinum subsp. glaucum]
 gi|1771433|emb|CAB01336.1|  alpha subunit of RNA polymerase [Psathyrostachys fragilis]
 gi|22657248|gb|AAM97427.1|  RNA polymerase alpha subunit [Hordeum brevisubulatum]
 gi|22657256|gb|AAM97431.1|  RNA polymerase alpha subunit [Hordeum murinum]
 gi|22657258|gb|AAM97432.1|  RNA polymerase alpha subunit [Hordeum murinum]
 gi|22657346|gb|AAM97476.1|  RNA polymerase alpha subunit [Psathyrostachys fragilis]
 gi|22657348|gb|AAM97477.1|  RNA polymerase alpha subunit [Psathyrostachys juncea]
 gi|51859675|gb|AAU11117.1|  RNA polymerase alpha subunit [Psathyrostachys juncea]
 gi|51859677|gb|AAU11118.1|  RNA polymerase alpha subunit [Psathyrostachys lanuginosa]
 gi|51859685|gb|AAU11122.1|  RNA polymerase alpha subunit [Psathyrostachys fragilis subsp. 
villosus]
 gi|51859687|gb|AAU11123.1|  RNA polymerase alpha subunit [Psathyrostachys fragilis subsp. 
villosus]
 gi|51859689|gb|AAU11124.1|  RNA polymerase alpha subunit [Psathyrostachys huashanica]
 gi|51859693|gb|AAU11126.1|  RNA polymerase alpha subunit [Psathyrostachys rupestris subsp. 
rupestris]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|3122776|sp|P92439|RPOA_THIBE  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1771793|emb|CAB01384.1|  alpha subunit of RNA polymerase [Thinopyrum bessarabicum]
 gi|22657340|gb|AAM97473.1|  RNA polymerase alpha subunit [Thinopyrum bessarabicum]
 gi|22657344|gb|AAM97475.1|  RNA polymerase alpha subunit [Thinopyrum scirpeum]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPPFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|118430418|ref|YP_874684.1| Gene info RNA polymerase alpha subunit [Hordeum vulgare subsp. vulgare]
 gi|68053191|sp|Q7H6J0|RPOA_HORMA  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053192|sp|Q7H6J1|RPOA_HORJU  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|68053193|sp|Q7H6J2|RPOA_HORBU  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1770313|emb|CAB01360.1|  alpha subunit of RNA polymerase [Hordeum brachyantherum subsp. 
californicum]
 gi|1770331|emb|CAB01774.1|  alpha subunit of RNA polymerase [Hordeum erectifolium]
 gi|1770339|emb|CAB01366.1|  alpha subunit of RNA polymerase [Hordeum marinum subsp. gussoneanum]
 gi|22657246|gb|AAM97426.1|  RNA polymerase alpha subunit [Hordeum brachyantherum]
 gi|22657250|gb|AAM97428.1|  RNA polymerase alpha subunit [Hordeum bulbosum]
 gi|22657252|gb|AAM97429.1|  RNA polymerase alpha subunit [Hordeum jubatum]
 gi|22657254|gb|AAM97430.1|  RNA polymerase alpha subunit [Hordeum marinum]
 gi|22657260|gb|AAM97433.1|  RNA polymerase alpha subunit [Hordeum pusillum]
 gi|118201072|gb|ABK79443.1| Gene info RNA polymerase alpha subunit [Hordeum vulgare subsp. vulgare]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|2500619|sp|P92418|RPOA_PSAFR  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1771429|emb|CAB01333.1|  alpha subunit of RNA polymerase [Psathyrostachys fragilis]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|7388079|sp|P92209|RPOA_AGRCR  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1769834|emb|CAB01390.1|  alpha subunit of RNA polymerase [Agropyron cristatum]
 gi|22657236|gb|AAM97421.1|  RNA polymerase alpha subunit [Agropyron cristatum]
 gi|22657238|gb|AAM97422.1|  RNA polymerase alpha subunit [Agropyron cristatum]
 gi|22657240|gb|AAM97423.1|  RNA polymerase alpha subunit [Agropyron mongolicum]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|7388094|sp|P93968|RPOA_FESFE  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1770264|emb|CAB01387.1|  alpha subunit of RNA polymerase [Festucopsis festucoides]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|41688709|sp|Q8MAI9|RPOA_ELYCL  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|22657266|gb|AAM97436.1|  RNA polymerase alpha subunit [Elymus californicus]
Length=339

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN  291


>gi|51859681|gb|AAU11120.1|  RNA polymerase alpha subunit [Psathyrostachys lanuginosa]
Length=339

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHCLLKTS  195
            ++  SF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+CL + +
Sbjct  234  EEGTSFEENKNRFTPPLLTFQKR-LTNLKKNKKGIPLNCIFIXQLELTSRTYNCLKRAN  291


>gi|115473537|ref|NP_001060367.1| Gene info Os07g0632600 [Oryza sativa (japonica cultivar-group)]
 gi|33146896|dbj|BAC79895.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113611903|dbj|BAF22281.1| Gene info Os07g0632600 [Oryza sativa (japonica cultivar-group)]
Length=688

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
 Frame = -3

Query  142  PSSMGEAGSFYSENHEIGSSFERISPFLR*MMHFFATLFSFSFIHYK  2
            P  +G++G    +     S+ ER +PFLR     ++T  SF+F+ +K
Sbjct  268  PEFIGKSGHHKVKVIFFSSTGERAAPFLRQAAQEYSTYASFAFVLWK  314


>gi|7388088|sp|P92225|RPOA_CRIDE  DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded 
RNA polymerase subunit alpha) (RNA polymerase subunit alpha)
 gi|1770151|emb|CAB01330.1|  alpha subunit of RNA polymerase [Crithopsis delileana]
Length=339

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +1

Query  37   QKSASFSAKMEKF------FQTRILSHGSQNKNSLPLPCLKVQSHTTNSQQYHC  180
            ++ ASF     +F      FQ R L++  +NK  +PL C+ +      S+ Y+C
Sbjct  234  EEGASFEENKNRFTPPLFTFQKR-LTNLKKNKKGIPLNCIFIDQLELTSRTYNC  286







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 266
Number of extensions: 8
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 315
Length of database: 101054579
Length adjustment: 74
Effective length of query: 241
Effective length of database: 80086753
Effective search space: 2482689343
Effective search space used: 2482689343
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)