RID=1168931545-17276-8550901328.BLASTQ1, Contig175

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168931545-17276-8550901328.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig175
Length=375

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|20805344|gb|AAM28676.1|  NADH dehydrogenase subunit F [Valeria  31.6    0.86 
gi|6424814|gb|AAF08149.1|  NADH dehydrogenase subunit F [Abeli...  31.6    0.86 
gi|20805320|gb|AAM28664.1|  NADH dehydrogenase subunit F [Kolkwit  31.6    0.86 
gi|12232579|gb|AAF18382.2|AF161294_1  NADH dehydrogenase subunit   31.6    0.86 
gi|8954305|gb|AAC64356.2|  NADH dehydrogenase subunit F [Linnaea   31.2    1.1  
gi|20805318|gb|AAM28663.1|  NADH dehydrogenase subunit F [Linnaea  31.2    1.1  
gi|20805316|gb|AAM28662.1|  NADH dehydrogenase subunit F [Dipelta  31.2    1.1  
gi|12232581|gb|AAF18383.2|AF161295_1  NADH dehydrogenase subunit   31.2    1.1  
gi|6424813|gb|AAF08148.1|  NADH dehydrogenase subunit F [Valerian  30.8    1.5  
gi|40068112|gb|AAR38801.1|  NADH dehydrogenase subunit F [Valeria  30.0    2.5  
gi|19912031|dbj|BAB88327.1|  BLE2 protein [Oryza sativa]           30.0    2.5   
gi|115473771|ref|NP_001060484.1|  Os07g0650600 [Oryza sativa (...  30.0    2.5   
gi|44953113|gb|AAS49488.1|  NADH dehydrogenase subunit F [Morina   29.6    3.3  
gi|40068106|gb|AAR38800.1|  NADH dehydrogenase subunit F [Valeria  29.6    3.3  
gi|20805336|gb|AAM28672.1|  NADH dehydrogenase subunit F [Valeria  29.6    3.3  
gi|20805338|gb|AAM28673.1|  NADH dehydrogenase subunit F [Patrini  29.6    3.3  
gi|28172974|gb|AAO32652.1|  NADH dehydrogenase subunit F [Nardost  29.6    3.3  
gi|12232583|gb|AAF18384.2|AF161296_1  NADH dehydrogenase subunit   29.6    3.3  
gi|22796551|emb|CAD23108.1|  NADH dehydrogenase subunit F [Morina  29.6    3.3  
gi|40068101|gb|AAR38799.1|  NADH dehydrogenase subunit F [Valeria  28.9    5.6  
gi|20805340|gb|AAM28674.1|  NADH dehydrogenase subunit F [Valeria  28.9    5.6  
gi|19525548|gb|AAL79680.1|  NADH dehydrogenase subunit F [Valeria  28.9    5.6  
gi|8954284|gb|AAF18385.2|AF161297_1  NADH dehydrogenase subuni...  28.9    5.6  
gi|33146575|dbj|BAC79771.1|  putative BLE2 protein [Oryza sativa   28.5    7.3   
gi|20805334|gb|AAM28671.1|  NADH dehydrogenase subunit F [Triplos  28.1    9.5

Alignments

 

>gi|20805344|gb|AAM28676.1|  NADH dehydrogenase subunit F [Valerianella locusta]
Length=667

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTIL  260
            TN S   +NS ++  H++ W +N  F  +  Y    + TI+
Sbjct  47   TNLSIQQINSNFIFQHVWSWMINSNFCLEFGYLIDPLTTIM  87


>gi|6424814|gb|AAF08149.1|  NADH dehydrogenase subunit F [Abelia x grandiflora]
 gi|20805314|gb|AAM28661.1|  NADH dehydrogenase subunit F [Abelia x grandiflora]
Length=722

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSSFIYQHIWSWMINNDFSLEFGYLIDPLTTIMS  88


>gi|20805320|gb|AAM28664.1|  NADH dehydrogenase subunit F [Kolkwitzia amabilis]
Length=670

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSSFIYQHIWSWMINNDFSLEFGYLIDPLTTIMS  88


>gi|12232579|gb|AAF18382.2|AF161294_1  NADH dehydrogenase subunit F [Kolkwitzia amabilis]
Length=686

 Score = 31.6 bits (70),  Expect = 0.86
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSSFIYQHIWSWMINNDFSLEFGYLIDPLTTIMS  88


>gi|8954305|gb|AAC64356.2|  NADH dehydrogenase subunit F [Linnaea borealis]
Length=686

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  35   TNLSIQQINSSFIYQHVWSWMINNDFSLEFGYLIDPLTTIMS  76


>gi|20805318|gb|AAM28663.1|  NADH dehydrogenase subunit F [Linnaea borealis]
Length=656

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  34   TNLSIQQINSSFIYQHVWSWMINNDFSLEFGYLIDPLTTIMS  75


>gi|20805316|gb|AAM28662.1|  NADH dehydrogenase subunit F [Dipelta yunnanensis]
Length=653

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSNFIYQHIWSWMINNDFSLEFGYLIDPLTTIMS  88


>gi|12232581|gb|AAF18383.2|AF161295_1  NADH dehydrogenase subunit F [Dipelta ventricosa]
Length=699

 Score = 31.2 bits (69),  Expect = 1.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSNFIYQHIWSWMINNDFSLEFGYLIDPLTTIMS  88


>gi|6424813|gb|AAF08148.1|  NADH dehydrogenase subunit F [Valeriana fauriei]
Length=721

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  46   TNLSIQQINSKFIYQHVWSWTINSNFSFEFGYLIDPLTTIMS  87


>gi|40068112|gb|AAR38801.1|  NADH dehydrogenase subunit F [Valeriana urticifolia]
Length=670

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTIL  260
            TN S   +NS ++  H++ W +N  F  +  Y    + TI+
Sbjct  37   TNLSIQQINSNFIYQHVWSWIINSNFCLEFGYLIDPLSTIM  77


>gi|19912031|dbj|BAB88327.1|  BLE2 protein [Oryza sativa]
Length=761

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query  84   AYNYS-YLSGTYFV-RHASMTNFSSNNLNSVYLITHLYGWQLN*KFLKQG  227
            AY Y  Y+ G  F  +  S++NF+ ++LNS      LYG Q+   FL+ G
Sbjct  371  AYAYDKYMEGGLFAPKRISLSNFAMDSLNSDLSKNQLYGVQMMHIFLQNG  420


>gi|115473771|ref|NP_001060484.1|  Os07g0650600 [Oryza sativa (japonica cultivar-group)]
 gi|23503758|dbj|BAC20065.2|  BLE2 protein [Oryza sativa (japonica cultivar-group)]
 gi|50509040|dbj|BAD32037.1|  BLE2 protein [Oryza sativa (japonica cultivar-group)]
 gi|113612020|dbj|BAF22398.1|  Os07g0650600 [Oryza sativa (japonica cultivar-group)]
Length=955

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query  84   AYNYS-YLSGTYFV-RHASMTNFSSNNLNSVYLITHLYGWQLN*KFLKQG  227
            AY Y  Y+ G  F  +  S++NF+ ++LNS      LYG Q+   FL+ G
Sbjct  371  AYAYDKYMEGGLFAPKRISLSNFAMDSLNSDLSKNQLYGVQMMHIFLQNG  420


>gi|44953113|gb|AAS49488.1|  NADH dehydrogenase subunit F [Morina longifolia]
Length=684

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSSFVYQHVWSWIINNDFSLEFGYLIDPLTTIMS  88


>gi|40068106|gb|AAR38800.1|  NADH dehydrogenase subunit F [Valeriana celtica]
Length=682

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  36   TNLSIQQINSHFIYQHVWSWIVNNNFSLEFGYLIDPLTTIMS  77


>gi|20805336|gb|AAM28672.1|  NADH dehydrogenase subunit F [Valeriana jatamansi]
Length=659

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSSFIYQHVWSWIVNNDFSLEFGYLIDPLTTIMS  88


>gi|20805338|gb|AAM28673.1|  NADH dehydrogenase subunit F [Patrinia triloba]
Length=682

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSRFIYQHVWSWIINNDFSLEFGYLIDPLTTIMS  88


>gi|28172974|gb|AAO32652.1|  NADH dehydrogenase subunit F [Nardostachys chinensis]
Length=693

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  52   TNLSIQQINSSFIYQHVWSWIVNNDFSLEFGYLIDPLTTIMS  93


>gi|12232583|gb|AAF18384.2|AF161296_1  NADH dehydrogenase subunit F [Patrinia triloba]
Length=692

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSRFIYQHVWSWIINNDFSLEFGYLIDPLTTIMS  88


>gi|22796551|emb|CAD23108.1|  NADH dehydrogenase subunit F [Morina longifolia]
Length=694

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  42   TNLSIQQINSSFVYQHVWSWIINNDFSLEFGYLIDPLTTIMS  83


>gi|40068101|gb|AAR38799.1|  NADH dehydrogenase subunit F [Valeriana sitchensis]
Length=680

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS  +  H++ W +N  F  +  Y    + TI++
Sbjct  35   TNLSIQQINSNLIYQHVWSWIINSNFCLEFGYLIDPLTTIMS  76


>gi|20805340|gb|AAM28674.1|  NADH dehydrogenase subunit F [Valeriana minutiflora]
Length=709

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS  +  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSNLIYQHVWSWIINSNFCLEFGYLIDPLTTIMS  88


>gi|19525548|gb|AAL79680.1|  NADH dehydrogenase subunit F [Valerianella locusta]
Length=678

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
 Frame = +3

Query  141  NFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            N S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  48   NLSIQQINSNFMYQHIWSWIINSNFCLEFGYLIDPLSTIMS  88


>gi|8954284|gb|AAF18385.2|AF161297_1  NADH dehydrogenase subunit F [Centranthus ruber]
 gi|20805348|gb|AAM28678.1|  NADH dehydrogenase subunit F [Centranthus ruber]
Length=694

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 0/42 (0%)
 Frame = +3

Query  138  TNFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            TN S   +NS  +  H++ W +N  F  +  Y    + TI++
Sbjct  47   TNLSIQQINSNLIYQHVWSWIINSNFCLEFGYLIDPLTTIMS  88


>gi|33146575|dbj|BAC79771.1|  putative BLE2 protein [Oryza sativa (japonica cultivar-group)]
Length=737

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query  87   YNYSY---LSGTYFV-RHASMTNFSSNNLNSVYLITHLYGWQL  203
            Y Y++   + G  FV +  S++NF+ N+LNS     H YG QL
Sbjct  392  YAYAFEKCMGGAVFVPKKISLSNFAINSLNSDSPKNHFYGIQL  434


>gi|20805334|gb|AAM28671.1|  NADH dehydrogenase subunit F [Triplostegia glandulifera]
Length=660

 Score = 28.1 bits (61),  Expect = 9.5
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
 Frame = +3

Query  141  NFSSNNLNSVYLITHLYGWQLN*KFLKQGAYFSSKICTILN  263
            N S   +NS ++  H++ W +N  F  +  Y    + TI++
Sbjct  48   NLSIQQINSSFIYQHVWSWIINNDFSLEFGYLIDPLTTIMS  88

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 270
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 375
Length of database: 101054579
Length adjustment: 92
Effective length of query: 283
Effective length of database: 74986471
Effective search space: 2474553543
Effective search space used: 2474553543
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)

Distribution of 25 Blast Hits on the Query Sequence