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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168926745-13028-78057962281.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig19
Length=671

Distribution of 199 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|46277275|gb|AAS86828.1|  RNA polymerase II second largest subu   329    6e-117
gi|40644994|emb|CAD88980.1|  DNA-directed RNA polymerase subunit    327    6e-117
gi|11134656|sp|Q42877|RPB2_LYCES  DNA-directed RNA polymerase ...   326    1e-116 Gene info
gi|68300810|gb|AAY89346.1|  RNA polymerase II second largest subu   326    1e-116
gi|40644720|emb|CAD92662.1|  RNA polymerase II [Solanum lycopersi   326    1e-116
gi|68300812|gb|AAY89347.1|  RNA polymerase II second largest subu   326    7e-116
gi|16488|emb|CAA79527.1|  RNA polymerase II second largest subuni   328    2e-115 UniGene info
gi|16486|emb|CAA79528.1|  RNA polymerase II second largest subuni   328    2e-115
gi|15234572|ref|NP_193902.1|  NRPB2; DNA binding [Arabidopsis ...   328    2e-115 UniGene infoGene info
gi|40645025|emb|CAD92461.1|  RNA polymerase II [Valeriana officin   323    3e-115
gi|40643998|emb|CAD91516.1|  RNA polymerase II second largest sub   322    5e-115
gi|40644555|emb|CAD89596.1|  RNA polymerase II, second largest su   322    5e-115
gi|70794966|gb|AAZ08457.1|  RNA polymerase II second largest s...   322    1e-114
gi|46277261|gb|AAS86821.1|  RNA polymerase II second largest subu   322    1e-114
gi|40642974|emb|CAD89599.1|  RNA polymerase II, second largest su   320    2e-114
gi|46277257|gb|AAS86819.1|  RNA polymerase II second largest s...   321    2e-114
gi|40642972|emb|CAD89598.1|  RNA polymerase II, second largest su   320    2e-114
gi|68300814|gb|AAY89348.1|  RNA polymerase II second largest subu   319    4e-114
gi|46277271|gb|AAS86826.1|  RNA polymerase II second largest subu   319    4e-114
gi|46277251|gb|AAS86816.1|  RNA polymerase II second largest subu   317    1e-113
gi|108710089|gb|ABF97884.1|  DNA-directed RNA polymerase II 13...   318    1e-113
gi|115454339|ref|NP_001050770.1|  Os03g0646800 [Oryza sativa (...   318    1e-113 Gene info
gi|68300804|gb|AAY89344.1|  RNA polymerase II second largest subu   318    3e-112
gi|40644545|emb|CAD88975.1|  DNA-directed RNA polymerase subunit    312    5e-112
gi|40644549|emb|CAD89106.1|  RNA polymerase II, second largest su   332    6e-112
gi|40644726|emb|CAD92665.1|  RNA polymerase II [Mimulus guttatus]   315    1e-111
gi|68300799|gb|AAY89342.1|  RNA polymerase II second largest subu   315    5e-111
gi|46277253|gb|AAS86817.1|  RNA polymerase II second largest subu   308    7e-111
gi|40643888|emb|CAD88887.1|  DNA-directed RNA polymerase subunit    308    7e-111
gi|68300807|gb|AAY89345.1|  RNA polymerase II second largest s...   314    4e-110
gi|46277289|gb|AAS86835.1|  RNA polymerase II second largest subu   308    4e-110
gi|40644724|emb|CAD92664.1|  RNA polymerase II [Solanum lycopersi   314    4e-110
gi|40644039|emb|CAD92460.1|  RNA polymerase II [Escallonia sp. Ox   325    6e-110
gi|40643905|emb|CAD89691.1|  RNA polymerase II, second largest...   325    6e-110
gi|70794986|gb|AAZ08467.1|  RNA polymerase II second largest s...   308    7e-110
gi|40644547|emb|CAD88888.1|  DNA-directed RNA polymerase subunit    324    9e-110
gi|40644998|emb|CAD89358.1|  RNA polymerase II, second largest su   323    1e-109
gi|40643899|emb|CAD89688.1|  RNA polymerase II, second largest su   310    1e-109
gi|46277259|gb|AAS86820.1|  RNA polymerase II second largest s...   322    4e-109
gi|3002819|gb|AAC08937.1|  RPB140 [Chloranthus spicatus]            323    5e-109
gi|3002941|gb|AAC08961.1|  RNA polymerase II second largest subun   320    8e-109
gi|50058765|gb|AAT69135.1|  RNA polymerase II [Schizanthus pinnat   323    1e-108
gi|40643994|emb|CAD90166.1|  DNA-directed RNA polymerase II la...   313    2e-108
gi|3002939|gb|AAC08960.1|  RNA polymerase II second largest subun   317    4e-108
gi|70794968|gb|AAZ08458.1|  RNA polymerase II second largest s...   307    1e-107
gi|46277283|gb|AAS86832.1|  RNA polymerase II second largest s...   307    1e-107
gi|2736117|gb|AAB94059.1|  RPB140 [Hordeum vulgare]                 318    1e-107 UniGene infoGene info
gi|67810699|gb|AAY82002.1|  RNA polymerase II second largest s...   297    3e-107
gi|67810650|gb|AAY82001.1|  RNA polymerase II second largest subu   298    7e-107
gi|67810752|gb|AAY82003.1|  RNA polymerase II second largest subu   298    7e-107
gi|2736121|gb|AAB94061.1|  RPB140 [Magnolia virginiana]             315    1e-106
gi|68131834|gb|AAY85195.1|  RNA polymerase II second largest s...   330    5e-106
gi|2736119|gb|AAB94060.1|  RPB140 [Spinacia oleracea]               313    5e-106
gi|68300802|gb|AAY89343.1|  RNA polymerase II second largest subu   296    6e-106
gi|46277273|gb|AAS86827.1|  RNA polymerase II second largest subu   296    6e-106
gi|40643897|emb|CAD89687.1|  RNA polymerase II, second largest su   326    3e-105
gi|40641904|emb|CAD88602.1|  RNA polymerase II second largest ...   327    4e-105
gi|40643911|emb|CAD89878.1|  RNA polymerase II, second largest su   321    7e-105
gi|46277279|gb|AAS86830.1|  RPB140 [Liquidambar acalycina]          325    1e-104
gi|68131914|gb|AAY85235.1|  RNA polymerase II second largest subu   323    1e-104
gi|70794976|gb|AAZ08462.1|  RNA polymerase II second largest subu   324    2e-104
gi|46277269|gb|AAS86825.1|  RNA polymerase II second largest subu   324    2e-104
gi|40642976|emb|CAD90163.1|  DNA-directed RNA polymerase II la...   324    2e-104
gi|70794970|gb|AAZ08459.1|  RNA polymerase II second largest s...   323    3e-104
gi|68131916|gb|AAY85236.1|  RNA polymerase II second largest subu   323    3e-104
gi|46277277|gb|AAS86829.1|  RNA polymerase II second largest subu   323    3e-104
gi|40644041|emb|CAD92463.1|  RNA polymerase II [Evolvulus sp. Ste   323    4e-104
gi|68131844|gb|AAY85200.1|  RNA polymerase II second largest subu   322    7e-104
gi|70794974|gb|AAZ08461.1|  RNA polymerase II second largest s...   322    7e-104
gi|46277263|gb|AAS86822.1|  RNA polymerase II second largest s...   322    7e-104
gi|68131842|gb|AAY85199.1|  RNA polymerase II second largest subu   322    1e-103
gi|70794972|gb|AAZ08460.1|  RNA polymerase II second largest s...   322    1e-103
gi|46277267|gb|AAS86824.1|  RNA polymerase II second largest s...   322    1e-103
gi|2736125|gb|AAB94063.1|  RPB140 [Ginkgo biloba]                   306    2e-103
gi|68131848|gb|AAY85202.1|  RNA polymerase II second largest s...   323    3e-103
gi|46277291|gb|AAS86836.1|  RNA polymerase II second largest subu   320    4e-103
gi|40644996|emb|CAD88981.1|  DNA-directed RNA polymerase subunit    281    4e-103
gi|40644582|emb|CAD89877.1|  RNA polymerase II, second largest...   319    6e-103
gi|2736127|gb|AAB94064.1|  RPB140 [Marchantia polymorpha]           306    8e-103
gi|40643996|emb|CAD91515.1|  RNA polymerase II second largest sub   318    8e-103
gi|46277255|gb|AAS86818.1|  RNA polymerase II second largest subu   299    1e-102
gi|46277287|gb|AAS86834.1|  RNA polymerase II second largest subu   318    1e-102
gi|40644557|emb|CAD89597.1|  RNA polymerase II, second largest su   316    9e-102
gi|46277249|gb|AAS86815.1|  RNA polymerase II second largest subu   297    2e-101
gi|47156741|gb|AAT12267.1|  RNA polymerase II second largest subu   315    7e-101
gi|4867854|emb|CAB43082.1|  RNA polymerase II [Retzia capensis]     273    4e-100
gi|68131884|gb|AAY85220.1|  RNA polymerase II second largest subu   310    8e-100
gi|4867856|emb|CAB43079.1|  RNA polymerase II [Peltanthera florib   271    2e-99 
gi|2736123|gb|AAB94062.1|  RPB140 [Aristolochia gigantea]           291    3e-98 
gi|56675894|emb|CAD98811.2|  RNA polymerase II, second largest...   310    3e-98 
gi|46277281|gb|AAS86831.1|  RNA polymerase II second largest s...   306    4e-98 
gi|40643907|emb|CAD89692.1|  RNA polymerase II, second largest...   303    4e-98 
gi|120407526|gb|AAY82000.2|  RNA polymerase II second largest sub   271    6e-98 
gi|67810558|gb|AAY81998.1|  RNA polymerase II second largest s...   273    6e-98 
gi|47156743|gb|AAT12268.1|  RNA polymerase II second largest subu   311    6e-98 
gi|40642970|emb|CAD88979.1|  DNA-directed RNA polymerase subunit    301    1e-97 
gi|4867793|emb|CAB43061.1|  RNA polymerase II [Buddleja asiatica]   266    1e-97 
gi|56675892|emb|CAD89518.2|  RNA polymerase II second largest sub   328    2e-97 
gi|4867893|emb|CAB43087.1|  RNA polymerase II [Sanango racemosum]   263    6e-97 
gi|67810584|gb|AAY81999.1|  RNA polymerase II second largest subu   264    4e-95
Alignments

>gi|46277275|gb|AAS86828.1|  RNA polymerase II second largest subunit [Acer circinatum]
Length=580

 Score =  329 bits (844),  Expect(2) = 6e-117
 Identities = 162/168 (96%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q+EAQGQ+SRY+RRDHSISLRHSETGIVDQ
Sbjct  344  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQSSRYTRRDHSISLRHSETGIVDQ  403

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  404  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  463

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  464  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  511


 Score =  112 bits (279),  Expect(2) = 6e-117
 Identities = 51/55 (92%), Positives = 51/55 (92%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  512  HKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  566


>gi|40644994|emb|CAD88980.1|  DNA-directed RNA polymerase subunit B [Vicia sativa]
Length=401

 Score =  327 bits (839),  Expect(2) = 6e-117
 Identities = 161/168 (95%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            Y+KLDDDGLA PGTRVSGEDVIIGKTTP+SQEEAQGQA+RYS+RDHSISLRHSE GIVDQ
Sbjct  118  YEKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDHSISLRHSENGIVDQ  177

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  178  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  237

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  238  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  285


 Score =  114 bits (284),  Expect(2) = 6e-117
 Identities = 52/55 (94%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  286  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  340


>gi|11134656|sp|Q42877|RPB2_LYCES Gene info DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase 
II subunit 2)
 gi|1049068|gb|AAC49273.1| UniGene infoGene info RNA polymerase II subunit 2
Length=1191

 Score =  326 bits (836),  Expect(2) = 1e-116
 Identities = 160/168 (95%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ++AQGQASRY+R+DHS SLRHSETG+VDQ
Sbjct  852   YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQ  911

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  912   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  971

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  972   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1019


 Score =  114 bits (284),  Expect(2) = 1e-116
 Identities = 52/55 (94%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1020  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1074


>gi|68300810|gb|AAY89346.1|  RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length=1087

 Score =  326 bits (836),  Expect(2) = 1e-116
 Identities = 160/168 (95%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ++AQGQASRY+R+DHS SLRHSETG+VDQ
Sbjct  755  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQ  814

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  815  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  874

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  875  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  922


 Score =  114 bits (284),  Expect(2) = 1e-116
 Identities = 52/55 (94%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  923  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  977


>gi|40644720|emb|CAD92662.1|  RNA polymerase II [Solanum lycopersicum]
Length=396

 Score =  326 bits (836),  Expect(2) = 1e-116
 Identities = 160/168 (95%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ++AQGQASRY+R+DHS SLRHSETG+VDQ
Sbjct  106  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQ  165

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  166  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  225

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  226  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  273


 Score =  114 bits (284),  Expect(2) = 1e-116
 Identities = 52/55 (94%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  274  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  328


>gi|68300812|gb|AAY89347.1|  RNA polymerase II second largest subunit [Petunia x hybrida]
Length=1195

 Score =  326 bits (835),  Expect(2) = 7e-116
 Identities = 159/168 (94%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ++AQGQASRY+R+DHS SLRHSETG+VDQ
Sbjct  856   YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQ  915

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDII
Sbjct  916   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDII  975

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  976   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1023


 Score =  112 bits (279),  Expect(2) = 7e-116
 Identities = 51/55 (92%), Positives = 51/55 (92%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFETMYNGHTGRRL AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1024  HKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1078


>gi|16488|emb|CAA79527.1| UniGene info RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length=1188

 Score =  328 bits (842),  Expect(2) = 2e-115
 Identities = 160/168 (95%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ+EAQGQ+SRY+RRDHSISLRHSETG+VDQ
Sbjct  853   YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQ  912

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG+TPDII
Sbjct  913   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDII  972

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  973   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1020


 Score =  107 bits (268),  Expect(2) = 2e-115
 Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFE MYNGHTGR L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1021  HKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1075


>gi|16486|emb|CAA79528.1|  RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length=1188

 Score =  328 bits (842),  Expect(2) = 2e-115
 Identities = 160/168 (95%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ+EAQGQ+SRY+RRDHSISLRHSETG+VDQ
Sbjct  853   YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQ  912

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG+TPDII
Sbjct  913   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDII  972

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  973   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1020


 Score =  107 bits (268),  Expect(2) = 2e-115
 Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFE MYNGHTGR L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1021  HKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1075


>gi|15234572|ref|NP_193902.1| UniGene infoGene info NRPB2; DNA binding [Arabidopsis thaliana]
 gi|21542437|sp|P38420|RPB2_ARATH Gene info DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase 
II subunit 2)
 gi|4455279|emb|CAB36815.1| Gene info DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain 
[Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| Gene info DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain 
[Arabidopsis thaliana]
Length=1188

 Score =  328 bits (842),  Expect(2) = 2e-115
 Identities = 160/168 (95%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ+EAQGQ+SRY+RRDHSISLRHSETG+VDQ
Sbjct  853   YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQ  912

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG+TPDII
Sbjct  913   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDII  972

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  973   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1020


 Score =  107 bits (268),  Expect(2) = 2e-115
 Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFE MYNGHTGR L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1021  HKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1075


>gi|40645025|emb|CAD92461.1|  RNA polymerase II [Valeriana officinalis]
Length=364

 Score =  323 bits (828),  Expect(2) = 3e-115
 Identities = 159/168 (94%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA  GTRVSGEDVIIGKTTPI+Q++AQGQASRY+RRDHS SLRHSETG+VDQ
Sbjct  126  YDKLDDDGLAPAGTRVSGEDVIIGKTTPIAQDDAQGQASRYTRRDHSTSLRHSETGMVDQ  185

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  186  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  245

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  246  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  293


 Score =  112 bits (281),  Expect(2) = 3e-115
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  294  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  348


>gi|40643998|emb|CAD91516.1|  RNA polymerase II second largest subunit [Garrya elliptica]
Length=576

 Score =  322 bits (826),  Expect(2) = 5e-115
 Identities = 156/168 (92%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q+++QGQASRY++RDHS SLRHSETG+VDQ
Sbjct  332  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQASRYTKRDHSTSLRHSETGMVDQ  391

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPWT+EGITPDII
Sbjct  392  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTLEGITPDII  451

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  452  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  499


 Score =  112 bits (281),  Expect(2) = 5e-115
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  500  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  554


>gi|40644555|emb|CAD89596.1|  RNA polymerase II, second largest subunit [Myoporum insulare]
Length=350

 Score =  322 bits (826),  Expect(2) = 5e-115
 Identities = 157/168 (93%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+ E+AQGQA+RY++RDHS SLRHSETGIVDQ
Sbjct  66   YDKLDDDGLAPPGTRVSGEDVIIGKTTPINPEDAQGQAARYTKRDHSTSLRHSETGIVDQ  125

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDII
Sbjct  126  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDII  185

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  186  VNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL  233


 Score =  112 bits (281),  Expect(2) = 5e-115
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  234  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  288


>gi|70794966|gb|AAZ08457.1|  RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length=1191

 Score =  322 bits (826),  Expect(2) = 1e-114
 Identities = 157/168 (93%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDV+IGKTTPI+Q+EAQG A+RY+RRDHS SLRHSETG+VDQ
Sbjct  852   YDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQ  911

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDII
Sbjct  912   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDII  971

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  972   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1019


 Score =  111 bits (278),  Expect(2) = 1e-114
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFETMYNGHTGRRL++MIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1020  HKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1074


>gi|46277261|gb|AAS86821.1|  RNA polymerase II second largest subunit [Akebia longeracemosa]
Length=575

 Score =  322 bits (826),  Expect(2) = 1e-114
 Identities = 158/168 (94%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PG RVSGEDVIIGKTTPI+QEE+QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  337  YDKLDDDGLAPPGIRVSGEDVIIGKTTPIAQEESQGQASRYTRRDHSTSLRHSESGMVDQ  396

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  397  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  456

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  457  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  504


 Score =  111 bits (278),  Expect(2) = 1e-114
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGR+L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  505  HKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  559


>gi|40642974|emb|CAD89599.1|  RNA polymerase II, second largest subunit [Borago officinalis]
Length=355

 Score =  320 bits (821),  Expect(2) = 2e-114
 Identities = 156/168 (92%), Positives = 164/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRV+GEDVIIGKTTPI+Q+EAQGQASRY+RRDHS S+RHSE G+VDQ
Sbjct  118  YDKLDDDGLAPPGTRVAGEDVIIGKTTPINQDEAQGQASRYTRRDHSTSMRHSENGMVDQ  177

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG TPDII
Sbjct  178  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGTTPDII  237

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  238  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  285


 Score =  112 bits (281),  Expect(2) = 2e-114
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  286  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  340


>gi|46277257|gb|AAS86819.1|  RNA polymerase II second largest subunit [Dioscorea sansibarensis]
Length=572

 Score =  321 bits (823),  Expect(2) = 2e-114
 Identities = 157/168 (93%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKT+PI Q+E+QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  335  YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDESQGQASRYTRRDHSTSLRHSESGMVDQ  394

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  395  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  454

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  455  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  502


 Score =  111 bits (278),  Expect(2) = 2e-114
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGR+L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  503  HKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  557


>gi|40642972|emb|CAD89598.1|  RNA polymerase II, second largest subunit [Borago officinalis]
Length=355

 Score =  320 bits (820),  Expect(2) = 2e-114
 Identities = 156/168 (92%), Positives = 164/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRV+GEDVIIG TTPI+Q+EAQGQASRY+RRDHS S+RHSE G+VDQ
Sbjct  118  YDKLDDDGLAPPGTRVAGEDVIIGXTTPINQDEAQGQASRYTRRDHSTSMRHSENGMVDQ  177

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  178  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  237

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  238  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  285


 Score =  112 bits (281),  Expect(2) = 2e-114
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  286  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  340


>gi|68300814|gb|AAY89348.1|  RNA polymerase II second largest subunit [Antirrhinum majus]
Length=1200

 Score =  319 bits (818),  Expect(2) = 4e-114
 Identities = 156/168 (92%), Positives = 164/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTR SGEDVIIGKTTPIS ++AQGQA+RY++RDHS SLRHSETG+VDQ
Sbjct  861   YDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQ  920

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDII
Sbjct  921   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDII  980

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  981   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1028


 Score =  112 bits (281),  Expect(2) = 4e-114
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFETMYNGHTGRRLS+MIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1029  HKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1083


>gi|46277271|gb|AAS86826.1|  RNA polymerase II second largest subunit [Antirrhinum majus]
Length=575

 Score =  319 bits (818),  Expect(2) = 4e-114
 Identities = 156/168 (92%), Positives = 164/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTR SGEDVIIGKTTPIS ++AQGQA+RY++RDHS SLRHSETG+VDQ
Sbjct  337  YDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQ  396

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDII
Sbjct  397  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDII  456

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  457  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  504


 Score =  112 bits (281),  Expect(2) = 4e-114
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRLS+MIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  505  HKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  559


>gi|46277251|gb|AAS86816.1|  RNA polymerase II second largest subunit [Cycas revoluta]
Length=567

 Score =  317 bits (811),  Expect(2) = 1e-113
 Identities = 155/168 (92%), Positives = 164/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q+EA GQA+RY++RD S SLRHSE+G+VDQ
Sbjct  337  YDKLDDDGLAPPGTRVSGEDVIIGKTTPITQDEAGGQAARYTKRDQSTSLRHSESGMVDQ  396

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  397  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  456

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  457  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  504


 Score =  114 bits (284),  Expect(2) = 1e-113
 Identities = 52/55 (94%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  505  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  559


>gi|108710089|gb|ABF97884.1|  DNA-directed RNA polymerase II 135 kDa polypeptide, putative, 
expressed [Oryza sativa (japonica cultivar-group)]
Length=1222

 Score =  318 bits (816),  Expect(2) = 1e-113
 Identities = 154/168 (91%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDGLA PGTRVSGEDVIIGKT+PI Q++AQGQA+RY++RDHS SLRHSE+G+VDQ
Sbjct  885   YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQ  944

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDII
Sbjct  945   VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDII  1004

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  1005  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1052


 Score =  111 bits (278),  Expect(2) = 1e-113
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFETMYNGHTGR+L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1053  HKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1107


>gi|115454339|ref|NP_001050770.1| Gene info Os03g0646800 [Oryza sativa (japonica cultivar-group)]
 gi|113549241|dbj|BAF12684.1| Gene info Os03g0646800 [Oryza sativa (japonica cultivar-group)]
Length=368

 Score =  318 bits (816),  Expect(2) = 1e-113
 Identities = 154/168 (91%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKT+PI Q++AQGQA+RY++RDHS SLRHSE+G+VDQ
Sbjct  31   YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQ  90

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDII
Sbjct  91   VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDII  150

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  151  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  198


 Score =  111 bits (278),  Expect(2) = 1e-113
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGR+L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  199  HKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  253


>gi|68300804|gb|AAY89344.1|  RNA polymerase II second largest subunit [Petunia x hybrida]
Length=1203

 Score =  318 bits (816),  Expect(2) = 3e-112
 Identities = 151/168 (89%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDG A PGTRVSG+DVIIGKTTPISQ++AQGQ++RY+R+DHS SLRHSETGIVDQ
Sbjct  866   YDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQSARYTRKDHSTSLRHSETGIVDQ  925

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPWT+EGITPDII
Sbjct  926   VLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEGITPDII  985

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQL+EC+MGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  986   VNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPFTDVTVDNISKAL  1033


 Score =  107 bits (267),  Expect(2) = 3e-112
 Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFE MYNGHTGR L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1034  HKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1088


>gi|40644545|emb|CAD88975.1|  DNA-directed RNA polymerase subunit B [Myrtus communis]
Length=572

 Score =  312 bits (800),  Expect(2) = 5e-112
 Identities = 158/169 (93%), Positives = 160/169 (94%), Gaps = 1/169 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQ-GQASRYSRRDHSISLRHSETGIVD  179
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+      G ASRYSRRDHSISLRHSETGIVD
Sbjct  340  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAXXXXXXGXASRYSRRDHSISLRHSETGIVD  399

Query  180  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI  359
            QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI
Sbjct  400  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI  459

Query  360  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            IVNPHAIPSRMTIGQLI CIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  460  IVNPHAIPSRMTIGQLIXCIMGKVAAHMGKEGDATPFTDVTVDNISKAL  508


 Score =  112 bits (281),  Expect(2) = 5e-112
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  509  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  563


>gi|40644549|emb|CAD89106.1|  RNA polymerase II, second largest subunit [Tephrosia purpurea]
Length=550

 Score =  332 bits (852),  Expect(2) = 6e-112
 Identities = 164/168 (97%), Positives = 167/168 (99%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPISQEEAQGQASRY+RRDHSISLRHSETGIVDQ
Sbjct  336  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYTRRDHSISLRHSETGIVDQ  395

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  396  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  455

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  456  VNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL  503


 Score = 92.4 bits (228),  Expect(2) = 6e-112
 Identities = 40/45 (88%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRL++MIFLG TYY RLKHM DDKIH
Sbjct  504  HKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIH  548


>gi|40644726|emb|CAD92665.1|  RNA polymerase II [Mimulus guttatus]
Length=629

 Score =  315 bits (806),  Expect(2) = 1e-111
 Identities = 155/169 (91%), Positives = 164/169 (97%), Gaps = 1/169 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQAS-RYSRRDHSISLRHSETGIVD  179
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+ +EAQGQA+ RY++RDHS SLRHSETG+VD
Sbjct  337  YDKLDDDGLAPPGTRVSGEDVIIGKTTPITPDEAQGQANARYTKRDHSTSLRHSETGMVD  396

Query  180  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI  359
            QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDI
Sbjct  397  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDI  456

Query  360  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            IVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  457  IVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL  505


 Score =  109 bits (272),  Expect(2) = 1e-111
 Identities = 48/55 (87%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRG+ETMYNGHTGR+L++MIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  506  HKCGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  560


>gi|68300799|gb|AAY89342.1|  RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length=1203

 Score =  315 bits (808),  Expect(2) = 5e-111
 Identities = 150/168 (89%), Positives = 163/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDG A PGTRVSG+DVIIGKTTPISQ++AQGQ +RY+++DHS SLRHSETGIVDQ
Sbjct  866   YDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQPARYTQKDHSTSLRHSETGIVDQ  925

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPW +EGITPDII
Sbjct  926   VLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWNIEGITPDII  985

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQL+ECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  986   VNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1033


 Score =  106 bits (264),  Expect(2) = 5e-111
 Identities = 48/55 (87%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             H+CGYQMRGFE MYNGHTGR L+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1034  HRCGYQMRGFERMYNGHTGRVLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1088


>gi|46277253|gb|AAS86817.1|  RNA polymerase II second largest subunit [Sequoia sempervirens]
Length=556

 Score =  308 bits (790),  Expect(2) = 7e-111
 Identities = 150/168 (89%), Positives = 161/168 (95%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q+++ GQ S+Y +RD S SLRHSE+G+VDQ
Sbjct  319  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVSKYPKRDQSTSLRHSESGMVDQ  378

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  379  VLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  438

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+IS+AL
Sbjct  439  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKAL  486


 Score =  112 bits (281),  Expect(2) = 7e-111
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGR+LSAMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  487  HKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  541


>gi|40643888|emb|CAD88887.1|  DNA-directed RNA polymerase subunit B [Fagonia lahovarii]
Length=484

 Score =  308 bits (790),  Expect(2) = 7e-111
 Identities = 152/168 (90%), Positives = 159/168 (94%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            Y+KLD DGLA PGTRVSGEDVIIGKTTPIS E AQG A+R +RRDHSISLRHSETGIVDQ
Sbjct  247  YEKLDGDGLAPPGTRVSGEDVIIGKTTPISXEXAQGAAARXTRRDHSISLRHSETGIVDQ  306

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLR VKVRV SVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPWT+EGITPDII
Sbjct  307  VLLTTNADGLRXVKVRVXSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEGITPDII  366

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGD TPFTDVTVDNIS+AL
Sbjct  367  VNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDXTPFTDVTVDNISKAL  414


 Score =  112 bits (281),  Expect(2) = 7e-111
 Identities = 51/55 (92%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  415  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  469


>gi|68300807|gb|AAY89345.1|  RNA polymerase II second largest subunit [Lycopersicon esculentum]
Length=1205

 Score =  314 bits (804),  Expect(2) = 4e-110
 Identities = 150/170 (88%), Positives = 164/170 (96%), Gaps = 0/170 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKL+DDG A PGTRVSG+DVIIGKTTPISQ+EAQGQ++RY+R+DHS SLRHSETGIVDQ
Sbjct  871   YDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDEAQGQSARYTRKDHSTSLRHSETGIVDQ  930

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPW+ EGITPDII
Sbjct  931   VLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDII  990

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALIN  512
             VNPHAIPSRMTIGQL+ECIMGKVAAH+GKEGDATPFTDVTVD+ISR L N
Sbjct  991   VNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDSISRTLHN  1040


 Score =  104 bits (260),  Expect(2) = 4e-110
 Identities = 48/55 (87%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             H CGYQMRGFE MYNGHTGR L AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1039  HNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1093


>gi|46277289|gb|AAS86835.1|  RNA polymerase II second largest subunit [Camellia japonica]
Length=591

 Score =  308 bits (790),  Expect(2) = 4e-110
 Identities = 148/168 (88%), Positives = 162/168 (96%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTP+  EE QG +SRY+RRDHS +LRHSE+G+VDQ
Sbjct  356  YDKLDDDGLAPPGTRVSGEDVIIGKTTPMVPEETQGPSSRYTRRDHSTALRHSESGMVDQ  415

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW++EGITPDII
Sbjct  416  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWSIEGITPDII  475

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMT+GQLIECIMGKVAAH+GK+GDATPFTDVT+DNIS+AL
Sbjct  476  VNPHAIPSRMTVGQLIECIMGKVAAHVGKKGDATPFTDVTLDNISKAL  523


 Score =  110 bits (274),  Expect(2) = 4e-110
 Identities = 49/55 (89%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGR+L++MIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  524  HKCGYQMRGFETMYNGHTGRQLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  578


>gi|40644724|emb|CAD92664.1|  RNA polymerase II [Solanum lycopersicum]
Length=342

 Score =  314 bits (804),  Expect(2) = 4e-110
 Identities = 150/170 (88%), Positives = 164/170 (96%), Gaps = 0/170 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKL+DDG A PGTRVSG+DVIIGKTTPISQ+EAQGQ++RY+R+DHS SLRHSETGIVDQ
Sbjct  108  YDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDEAQGQSARYTRKDHSTSLRHSETGIVDQ  167

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPW+ EGITPDII
Sbjct  168  VLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDII  227

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALIN  512
            VNPHAIPSRMTIGQL+ECIMGKVAAH+GKEGDATPFTDVTVD+ISR L N
Sbjct  228  VNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDSISRTLHN  277


 Score =  104 bits (260),  Expect(2) = 4e-110
 Identities = 48/55 (87%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            H CGYQMRGFE MYNGHTGR L AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  276  HNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  330


>gi|40644039|emb|CAD92460.1|  RNA polymerase II [Escallonia sp. Oxelman 2340]
Length=543

 Score =  325 bits (832),  Expect(2) = 6e-110
 Identities = 159/168 (94%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q++AQGQASRYS+RDHS SLRHSETG+VDQ
Sbjct  331  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQASRYSKRDHSTSLRHSETGMVDQ  390

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDII
Sbjct  391  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDII  450

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  451  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  498


 Score = 93.6 bits (231),  Expect(2) = 6e-110
 Identities = 41/45 (91%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIH
Sbjct  499  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH  543


>gi|40643905|emb|CAD89691.1|  RNA polymerase II, second largest subunit [Escallonia sp. Oxelman 
2340]
Length=508

 Score =  325 bits (832),  Expect(2) = 6e-110
 Identities = 159/168 (94%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q++AQGQASRYS+RDHS SLRHSETG+VDQ
Sbjct  274  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQASRYSKRDHSTSLRHSETGMVDQ  333

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDII
Sbjct  334  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDII  393

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  394  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  441


 Score = 93.6 bits (231),  Expect(2) = 6e-110
 Identities = 41/45 (91%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIH
Sbjct  442  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH  486


>gi|70794986|gb|AAZ08467.1|  RNA polymerase II second largest subunit [Linanthus californicus]
Length=733

 Score =  308 bits (789),  Expect(2) = 7e-110
 Identities = 154/170 (90%), Positives = 161/170 (94%), Gaps = 2/170 (1%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQ--GQASRYSRRDHSISLRHSETGIV  176
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+ +EA   G A+RY++RDHS SLRHSETGIV
Sbjct  394  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEATQGGPAARYTKRDHSTSLRHSETGIV  453

Query  177  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD  356
            DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PD
Sbjct  454  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGICPD  513

Query  357  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            IIVNPHAIPSRMTIGQLIECIMGKVAA MGKEGDATPFTDVTVDNIS+AL
Sbjct  514  IIVNPHAIPSRMTIGQLIECIMGKVAAXMGKEGDATPFTDVTVDNISKAL  563


 Score =  109 bits (273),  Expect(2) = 7e-110
 Identities = 50/55 (90%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL A IFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  564  HKCGYQMRGFETMYNGHTGRRLPAXIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  618


>gi|40644547|emb|CAD88888.1|  DNA-directed RNA polymerase subunit B [Maytenus arbutifolia]
Length=459

 Score =  324 bits (830),  Expect(2) = 9e-110
 Identities = 159/168 (94%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+QE+AQGQ SRY+RRDHSISLRHSETG+VDQ
Sbjct  247  YDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEDAQGQGSRYTRRDHSISLRHSETGMVDQ  306

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLR VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  307  VLLTTNADGLRSVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  366

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  367  VNPHAIPSRMTIGQLIECLMGKVAAHMGKEGDATPFTDVTVDNISKAL  414


 Score = 93.6 bits (231),  Expect(2) = 9e-110
 Identities = 41/45 (91%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIH
Sbjct  415  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH  459


>gi|40644998|emb|CAD89358.1|  RNA polymerase II, second largest subunit [Vitis piasezkii]
Length=551

 Score =  323 bits (829),  Expect(2) = 1e-109
 Identities = 158/168 (94%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPISQ+++QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  339  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQ  398

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  399  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  458

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  459  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  506


 Score = 93.6 bits (231),  Expect(2) = 1e-109
 Identities = 41/45 (91%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIH
Sbjct  507  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH  551


>gi|40643899|emb|CAD89688.1|  RNA polymerase II, second largest subunit [Ilex x meserveae]
Length=356

 Score =  310 bits (793),  Expect(2) = 1e-109
 Identities = 149/168 (88%), Positives = 161/168 (95%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YD+LDDDG A PGT+VSG+DVIIG TTPI+Q++AQGQASRY+RRDHS SLRHSE GIVDQ
Sbjct  118  YDRLDDDGFAPPGTKVSGDDVIIGXTTPIAQDDAQGQASRYTRRDHSTSLRHSEHGIVDQ  177

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVR+PQIGDKFSSRHGQ GTVGMTY QED+PWT+EGITPDII
Sbjct  178  VLLTTNADGLRFVKVRMRSVRLPQIGDKFSSRHGQXGTVGMTYNQEDLPWTIEGITPDII  237

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  238  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  285


 Score =  107 bits (267),  Expect(2) = 1e-109
 Identities = 48/55 (87%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFET YNGHTGR++ AMIFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  286  HKCGYQMRGFETTYNGHTGRQIPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  340


>gi|46277259|gb|AAS86820.1|  RNA polymerase II second largest subunit [Trochodendron aralioides]
Length=547

 Score =  322 bits (825),  Expect(2) = 4e-109
 Identities = 157/168 (93%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q+E+QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  335  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQ  394

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDII
Sbjct  395  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDII  454

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  455  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  502


 Score = 93.6 bits (231),  Expect(2) = 4e-109
 Identities = 41/45 (91%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRL+AMIFLG TYY RLKHM DDKIH
Sbjct  503  HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH  547


>gi|3002819|gb|AAC08937.1|  RPB140 [Chloranthus spicatus]
Length=533

 Score =  323 bits (827),  Expect(2) = 5e-109
 Identities = 157/168 (93%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKTTPI+Q+E QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  321  YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDETQGQASRYTRRDHSTSLRHSESGMVDQ  380

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVR+PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  381  VLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  440

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  441  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  488


 Score = 92.4 bits (228),  Expect(2) = 5e-109
 Identities = 40/45 (88%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGR+L+AMIFLG TYY RLKHM DDKIH
Sbjct  489  HKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH  533


>gi|3002941|gb|AAC08961.1|  RNA polymerase II second largest subunit [Nymphaea odorata]
Length=555

 Score =  320 bits (819),  Expect(2) = 8e-109
 Identities = 156/168 (92%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKT+PISQ+++QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  343  YDKLDDDGLAPPGTRVSGEDVIIGKTSPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQ  402

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDII
Sbjct  403  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDII  462

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  463  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  510


 Score = 94.7 bits (234),  Expect(2) = 8e-109
 Identities = 42/45 (93%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIH
Sbjct  511  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH  555


>gi|50058765|gb|AAT69135.1|  RNA polymerase II [Schizanthus pinnatus]
Length=272

 Score =  323 bits (827),  Expect(2) = 1e-108
 Identities = 156/168 (92%), Positives = 166/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDG+A PGTRVSGEDVIIGKTTPI+Q++AQGQA+RY++RDHS SLRHSETG+VDQ
Sbjct  58   YDKLDDDGIAPPGTRVSGEDVIIGKTTPIAQDDAQGQATRYTKRDHSTSLRHSETGMVDQ  117

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII
Sbjct  118  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  177

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  178  VNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKAL  225


 Score = 90.9 bits (224),  Expect(2) = 1e-108
 Identities = 40/45 (88%), Positives = 41/45 (91%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGR L+AMIFLG TYY RLKHM DDKIH
Sbjct  226  HKCGYQMRGFETMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIH  270


>gi|40643994|emb|CAD90166.1|  DNA-directed RNA polymerase II largest subunit [Gardenia sp. 
Oxelman 2319]
Length=627

 Score =  313 bits (801),  Expect(2) = 2e-108
 Identities = 153/168 (91%), Positives = 161/168 (95%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLD DG A PGTRVSGEDVIIGKTT + Q+EAQGQASRY+RRDHS SLRHSE+GIVDQ
Sbjct  338  YDKLDADGFAPPGTRVSGEDVIIGKTTSLPQDEAQGQASRYTRRDHSTSLRHSESGIVDQ  397

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            V LTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDII
Sbjct  398  VALTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDII  457

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  458  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  505


 Score =  100 bits (249),  Expect(2) = 2e-108
 Identities = 44/55 (80%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFE +YNGHTGR +  +IF+G TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  506  HKCGYQMRGFERVYNGHTGRIMGDLIFMGPTYYQRLKHMVDDKIHSRGRGPVQIL  560


>gi|3002939|gb|AAC08960.1|  RNA polymerase II second largest subunit [Peperomia caperata]
Length=554

 Score =  317 bits (813),  Expect(2) = 4e-108
 Identities = 155/168 (92%), Positives = 164/168 (97%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKT+PI+Q+E+QGQASRY+RRDHS SLRHSE+G+VDQ
Sbjct  342  YDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQGQASRYNRRDHSTSLRHSESGMVDQ  401

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDII
Sbjct  402  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDII  461

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VN HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  462  VNQHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  509


 Score = 94.7 bits (234),  Expect(2) = 4e-108
 Identities = 42/45 (93%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGRRLSAMIFLG TYY RLKHM DDKIH
Sbjct  510  HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH  554


>gi|70794968|gb|AAZ08458.1|  RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length=1207

 Score =  307 bits (787),  Expect(2) = 1e-107
 Identities = 146/168 (86%), Positives = 160/168 (95%), Gaps = 0/168 (0%)
 Frame = +3

Query  3     YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
             YDKLDDDG A PGTRV+GEDVIIGKTTPI+ ++AQGQ +RY+RRDHS  LRHSE+G+VDQ
Sbjct  870   YDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQ  929

Query  183   VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
             VLLTTNADGLRFVK+R+RS+RIPQIGDKFSSRHGQKGT+GM YTQEDMPWT+EGI PDII
Sbjct  930   VLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDII  989

Query  363   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
             VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  990   VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  1037


 Score =  103 bits (256),  Expect(2) = 1e-107
 Identities = 47/55 (85%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = +2

Query  506   HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
             HKCGYQMRGFE MYNGHTGR L+  IFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  1038  HKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  1092


>gi|46277283|gb|AAS86832.1|  RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length=580

 Score =  307 bits (787),  Expect(2) = 1e-107
 Identities = 146/168 (86%), Positives = 160/168 (95%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDG A PGTRV+GEDVIIGKTTPI+ ++AQGQ +RY+RRDHS  LRHSE+G+VDQ
Sbjct  337  YDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQ  396

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVK+R+RS+RIPQIGDKFSSRHGQKGT+GM YTQEDMPWT+EGI PDII
Sbjct  397  VLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDII  456

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct  457  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL  504


 Score =  103 bits (256),  Expect(2) = 1e-107
 Identities = 47/55 (85%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFE MYNGHTGR L+  IFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  505  HKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL  559


>gi|2736117|gb|AAB94059.1| UniGene infoGene info RPB140 [Hordeum vulgare]
Length=555

 Score =  318 bits (814),  Expect(2) = 1e-107
 Identities = 154/168 (91%), Positives = 165/168 (98%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGLA PGTRVSGEDVIIGKT+PI Q++AQGQA+RYS+RDHS SLRHSE+G+VDQ
Sbjct  343  YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQ  402

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDII
Sbjct  403  VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDII  462

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+IS+AL
Sbjct  463  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDHISKAL  510


 Score = 92.4 bits (228),  Expect(2) = 1e-107
 Identities = 40/45 (88%), Positives = 42/45 (93%), Gaps = 0/45 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIH  640
            HKCGYQMRGFETMYNGHTGR+L+AMIFLG TYY RLKHM DDKIH
Sbjct  511  HKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH  555


>gi|67810699|gb|AAY82002.1|  RNA polymerase II second largest subunit [Selaginella erythropus]
Length=581

 Score =  297 bits (761),  Expect(2) = 3e-107
 Identities = 144/168 (85%), Positives = 157/168 (93%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDG+A PGTRVSGEDVIIGKTTP++Q+E   QA RY++RD S  LRHSE+G++DQ
Sbjct  343  YDKLDDDGIAPPGTRVSGEDVIIGKTTPVTQDETSTQAQRYTKRDQSTCLRHSESGMIDQ  402

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVK RVRS+RIPQIGDKFSSRHGQKGT+GMTYTQEDMP+T EGITPDII
Sbjct  403  VLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDII  462

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAA MGKEGDATPFTDVTVDNIS+AL
Sbjct  463  VNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKAL  510


 Score =  112 bits (279),  Expect(2) = 3e-107
 Identities = 50/55 (90%), Positives = 52/55 (94%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFETMYNGHTGRRL+AMIF+G TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  511  HKCGYQMRGFETMYNGHTGRRLNAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQIL  565


>gi|67810650|gb|AAY82001.1|  RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
Length=704

 Score =  298 bits (764),  Expect(2) = 7e-107
 Identities = 144/168 (85%), Positives = 156/168 (92%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YD+LDDDGLA PGTRVSGEDVIIGKTTP+ Q++   QA RY++RD S  LRHSE+G++DQ
Sbjct  343  YDELDDDGLAPPGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQ  402

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVK+RVRS+RIPQIGDKFSSRHGQK TVGMTYTQEDMPWT EGITPDII
Sbjct  403  VLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDII  462

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD TVDNIS+AL
Sbjct  463  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDATVDNISKAL  510


 Score =  109 bits (272),  Expect(2) = 7e-107
 Identities = 50/55 (90%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
 Frame = +2

Query  506  HKCGYQMRGFETMYNGHTGRRLSAMIFLGXTYYPRLKHMXDDKIHSRGRGPVQIL  670
            HKCGYQMRGFE MYNGHTGRRLSA IFLG TYY RLKHM DDKIHSRGRGPVQIL
Sbjct  511  HKCGYQMRGFEVMYNGHTGRRLSAHIFLGPTYYQRLKHMMDDKIHSRGRGPVQIL  565


>gi|67810752|gb|AAY82003.1|  RNA polymerase II second largest subunit [Psilotum nudum]
Length=614

 Score =  298 bits (764),  Expect(2) = 7e-107
 Identities = 143/168 (85%), Positives = 157/168 (93%), Gaps = 0/168 (0%)
 Frame = +3

Query  3    YDKLDDDGLASPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQ  182
            YDKLDDDGL  PGTRVSGEDVIIGKTTP+SQ++   QA RYS+RD S  LR SE+G++DQ
Sbjct  343  YDKLDDDGLTPPGTRVSGEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQ  402

Query  183  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII  362
            VLLTTNADGLRFVK+RVRS+R+PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGI+PDII
Sbjct  403  VLLTTNADGLRFVKIRVRSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDII  462

Query  363  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL  506
            VNPHAIPSRMTIGQLIECIMGKVAAHMG+EGDATPFTDVTVD+IS+AL
Sbjct  463  VNPHAIPSRMTIGQLIECIMGKVAAHMGREGDATPFTDVTVDSISKAL  510







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 444
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 671
Length of database: 101054579
Length adjustment: 109
Effective length of query: 562
Effective length of database: 70169538
Effective search space: 7999327332
Effective search space used: 7999327332
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 65 (29.6 bits)