RID=1168937345-3682-68003970019.BLASTQ1, Contig190

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168937345-3682-68003970019.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig190
Length=351

Distribution of 16 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15240715|ref|NP_201538.1|  unknown protein [Arabidopsis tha...   129    3e-30 
gi|92880615|gb|ABE85761.1|  Protein of unknown function DUF1230 [   127    1e-29
gi|115453707|ref|NP_001050454.1|  Os03g0439700 [Oryza sativa (...   104    1e-22 
gi|40736997|gb|AAR89010.1|  expressed protein [Oryza sativa (japo   104    1e-22 
gi|39546230|emb|CAE04479.3|  OSJNBa0029L02.20 [Oryza sativa (japo  37.4    0.016 
gi|15239796|ref|NP_196745.1|  unknown protein [Arabidopsis tha...  34.3    0.14  
gi|116056054|emb|CAL58587.1|  unnamed protein product [Ostreococc  33.1    0.30 
gi|108864295|gb|ABA92890.2|  retrotransposon protein, putative...  32.7    0.40 
gi|62734702|gb|AAX96811.1|  retrotransposon protein, putative,...  32.7    0.40 
gi|51038182|gb|AAT93985.1|  putative polyprotein [Oryza sativa (j  32.3    0.52 
gi|77554643|gb|ABA97439.1|  retrotransposon protein, putative,...  30.4    2.0  
gi|62734676|gb|AAX96785.1|  retrotransposon protein, putative,...  30.4    2.0  
gi|77553999|gb|ABA96795.1|  retrotransposon protein, putative,...  30.0    2.6  
gi|15240355|ref|NP_200988.1|  unknown protein [Arabidopsis tha...  30.0    2.6   
gi|50300501|gb|AAT73644.1|  hypothetical protein [Oryza sativa (j  28.9    5.8  
gi|115451255|ref|NP_001049228.1|  Os03g0190800 [Oryza sativa (...  28.5    7.5

Alignments

 

>gi|15240715|ref|NP_201538.1|  unknown protein [Arabidopsis thaliana]
 gi|13430430|gb|AAK25837.1|AF360127_1  unknown protein [Arabidopsis thaliana]
 gi|9758436|dbj|BAB09022.1|  unnamed protein product [Arabidopsis thaliana]
 gi|15293189|gb|AAK93705.1|  unknown protein [Arabidopsis thaliana]
Length=327

 Score =  129 bits (324),  Expect = 3e-30
 Identities = 89/116 (76%), Positives = 100/116 (86%), Gaps = 0/116 (0%)
 Frame = -3

Query  349  VLARDRLLGSYKVKPVIKLLKQtlvgtgallvttvflFIFATPVEDFFRTTFSANETPSN  170
            VLARDRLLGSYKVKPVIK+LKQTL+GTGALLV+   LF+FATPVEDFF+TT  + E    
Sbjct  202  VLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVLFVFATPVEDFFKTTLGSTENQPE  261

Query  169  VLASKTKAKFNIRKEELLQLPVEVKadddlaaaaaeaaDGRPVYCRDRFYRALAGG  2
            V  S+T  KFNIRKE+LL+LPV+V  DDDLAAAAAEAADGRPVYCRDR+YRALAGG
Sbjct  262  VSISRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEAADGRPVYCRDRYYRALAGG  317


>gi|92880615|gb|ABE85761.1|  Protein of unknown function DUF1230 [Medicago truncatula]
Length=312

 Score =  127 bits (319),  Expect = 1e-29
 Identities = 90/116 (77%), Positives = 100/116 (86%), Gaps = 0/116 (0%)
 Frame = -3

Query  349  VLARDRLLGSYKVKPVIKLLKQtlvgtgallvttvflFIFATPVEDFFRTTFSANETPSN  170
            +LARDRLLGSYKVKPV+KLLKQTLVGTGALLVT V LFIFATPVE+F  +TF+  E  S 
Sbjct  187  ILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFLHSTFTTEENKST  246

Query  169  VLASKTKAKFNIRKEELLQLPVEVKadddlaaaaaeaaDGRPVYCRDRFYRALAGG  2
            V   K   K+N+RKEELL+LP +VKADD+LAAAAAEAADGRPVYCRDRFYRALAGG
Sbjct  247  VQVPKVNTKYNLRKEELLKLPADVKADDNLAAAAAEAADGRPVYCRDRFYRALAGG  302


>gi|115453707|ref|NP_001050454.1|  Os03g0439700 [Oryza sativa (japonica cultivar-group)]
 gi|108709042|gb|ABF96837.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113548925|dbj|BAF12368.1|  Os03g0439700 [Oryza sativa (japonica cultivar-group)]
Length=312

 Score =  104 bits (259),  Expect = 1e-22
 Identities = 85/116 (73%), Positives = 92/116 (79%), Gaps = 8/116 (6%)
 Frame = -3

Query  349  VLARDRLLGSYKVKPVIKLLKQtlvgtgallvttvflFIFATPVEDFFRTTFSANETPSN  170
            VLARDRLLGSYKVKPVI LLKQTLVGTGALLV  V LF FA PVEDF     S N  PS 
Sbjct  195  VLARDRLLGSYKVKPVINLLKQTLVGTGALLVGAVSLFAFAAPVEDFLH---SVNAPPS-  250

Query  169  VLASKTKAKFNIRKEELLQLPVEVKadddlaaaaaeaaDGRPVYCRDRFYRALAGG  2
                   +K ++R+EELL+LPVEV+ DDDLAAAAAEAADGRPVYCRDR+YRALAGG
Sbjct  251  ----AASSKPSLRREELLRLPVEVRQDDDLAAAAAEAADGRPVYCRDRYYRALAGG  302


>gi|40736997|gb|AAR89010.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
Length=262

 Score =  104 bits (259),  Expect = 1e-22
 Identities = 85/116 (73%), Positives = 92/116 (79%), Gaps = 8/116 (6%)
 Frame = -3

Query  349  VLARDRLLGSYKVKPVIKLLKQtlvgtgallvttvflFIFATPVEDFFRTTFSANETPSN  170
            VLARDRLLGSYKVKPVI LLKQTLVGTGALLV  V LF FA PVEDF     S N  PS 
Sbjct  145  VLARDRLLGSYKVKPVINLLKQTLVGTGALLVGAVSLFAFAAPVEDFLH---SVNAPPS-  200

Query  169  VLASKTKAKFNIRKEELLQLPVEVKadddlaaaaaeaaDGRPVYCRDRFYRALAGG  2
                   +K ++R+EELL+LPVEV+ DDDLAAAAAEAADGRPVYCRDR+YRALAGG
Sbjct  201  ----AASSKPSLRREELLRLPVEVRQDDDLAAAAAEAADGRPVYCRDRYYRALAGG  252


>gi|39546230|emb|CAE04479.3|  OSJNBa0029L02.20 [Oryza sativa (japonica cultivar-group)]
Length=1518

 Score = 37.4 bits (85),  Expect = 0.016
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 0/38 (0%)
 Frame = +3

Query  189  AEKVVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            ++ +VLKK   GV K NR+   TSKAP  T+V FN L+
Sbjct  198  SKMIVLKKPEVGVWKENRSGASTSKAPRKTKVTFNMLL  235


>gi|15239796|ref|NP_196745.1|  unknown protein [Arabidopsis thaliana]
 gi|7573351|emb|CAB87657.1|  putative protein [Arabidopsis thaliana]
Length=255

 Score = 34.3 bits (77),  Expect = 0.14
 Identities = 16/21 (76%), Positives = 18/21 (85%), Gaps = 0/21 (0%)
 Frame = -3

Query  349  VLARDRLLGSYKVKPVIKLLK  287
            VLARDRLLGS+ VKPV+  LK
Sbjct  170  VLARDRLLGSFSVKPVLARLK  190


>gi|116056054|emb|CAL58587.1|  unnamed protein product [Ostreococcus tauri]
Length=266

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 13/22 (59%), Positives = 20/22 (90%), Gaps = 0/22 (0%)
 Frame = -3

Query  349  VLARDRLLGSYKVKPVIKLLKQ  284
            +LARDRLLG+Y  +PV++LL++
Sbjct  174  MLARDRLLGTYTARPVVELLRK  195


>gi|108864295|gb|ABA92890.2|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1321

 Score = 32.7 bits (73),  Expect = 0.40
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 0/42 (0%)
 Frame = +3

Query  177  GVSFAEKVVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            G +  + +V KK   GV K NR+   TSKAP  T+V F+ L+
Sbjct  134  GEARPKMIVPKKPEVGVWKENRSGASTSKAPRKTKVTFDMLL  175


>gi|62734702|gb|AAX96811.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1237

 Score = 32.7 bits (73),  Expect = 0.40
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 0/42 (0%)
 Frame = +3

Query  177  GVSFAEKVVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            G +  + +V KK   GV K NR+   TSKAP  T+V F+ L+
Sbjct  134  GEARPKMIVPKKPEVGVWKENRSGASTSKAPRKTKVTFDMLL  175


>gi|51038182|gb|AAT93985.1|  putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length=1941

 Score = 32.3 bits (72),  Expect = 0.52
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
 Frame = +3

Query  198  VVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            +V KK   GV K NR+   TSKAP  T+V F+ L+
Sbjct  644  IVPKKPEVGVWKENRSGASTSKAPRKTKVTFDMLL  678


>gi|77554643|gb|ABA97439.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=938

 Score = 30.4 bits (67),  Expect = 2.0
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
 Frame = +3

Query  198  VVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            +V K    GV K NR+ V TSKAP  T+V F+ L+
Sbjct  2    MVPKNPVFGVWKENRSEVSTSKAPKKTKVTFDMLL  36


>gi|62734676|gb|AAX96785.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
 gi|77549750|gb|ABA92547.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=977

 Score = 30.4 bits (67),  Expect = 2.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 0/42 (0%)
 Frame = +3

Query  177  GVSFAEKVVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            G S  + +V K    GV K NR+   +SKAP   +V FN L+
Sbjct  382  GESRPKMMVPKNPEVGVWKENRSEASSSKAPKKAKVTFNMLL  423


>gi|77553999|gb|ABA96795.1|  retrotransposon protein, putative, unclassified [Oryza sativa 
(japonica cultivar-group)]
Length=1371

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
 Frame = +3

Query  198  VVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLI  302
            +V K    GV K NR+  ++SKAP  T+V F+ L+
Sbjct  465  MVPKNPKVGVWKENRSEALSSKAPKKTKVTFDMLL  499


>gi|15240355|ref|NP_200988.1|  unknown protein [Arabidopsis thaliana]
 gi|10176873|dbj|BAB10080.1|  unnamed protein product [Arabidopsis thaliana]
Length=499

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 0/59 (0%)
 Frame = +3

Query  171  FDGVSFAEKVVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLITGLTL*EPSNLSRAR  347
            F  V FA   +   +S     ++  T V      P+  CFN +I   TL EPS+LS  R
Sbjct  43   FANVLFAITSISPSASASKEVVSYATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKR  101


>gi|50300501|gb|AAT73644.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=596

 Score = 28.9 bits (63),  Expect = 5.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 0/46 (0%)
 Frame = +3

Query  198  VVLKKSSTGVAKINRNTVVTSKAPVPTRVCFNNLITGLTL*EPSNL  335
            +V K    GV K NR+   +SKAP  T+V F+ L+        SNL
Sbjct  122  MVPKNPEVGVWKENRSGASSSKAPKKTKVTFDMLLDKYEKQSGSNL  167


>gi|115451255|ref|NP_001049228.1|  Os03g0190800 [Oryza sativa (japonica cultivar-group)]
 gi|24756890|gb|AAN64154.1|  Putative ubiquitin-specific protease 3 [Oryza sativa (japonica 
cultivar-group)]
 gi|108706601|gb|ABF94396.1|  Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113547699|dbj|BAF11142.1|  Os03g0190800 [Oryza sativa (japonica cultivar-group)]
Length=366

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query  192  EKVVLKKSSTGVAKINRNTVVTSKAPVPTRV--CFNNLITGLT  314
            E   LKK+S G   +  N   T K PVPT V  CF  ++T  T
Sbjct  140  ENSSLKKNSNGPINVQLNG--TKKEPVPTLVHKCFQGILTNET  180

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 181
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 351
Length of database: 101054579
Length adjustment: 84
Effective length of query: 267
Effective length of database: 77253263
Effective search space: 2549357679
Effective search space used: 2549357679
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)