Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168937533-18789-121484597410.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig197 Length=515
Score E Sequences producing significant alignments: (Bits) Value gi|21554192|gb|AAM63271.1| unknown [Arabidopsis thaliana] 202 1e-54 gi|2760349|gb|AAB95252.1| ubiquitin [Arabidopsis thaliana] 202 2e-54 gi|84796035|gb|ABC66105.1| putative pentameric polyubiquitin [Zi 205 6e-53 gi|40287484|gb|AAR83856.1| hexameric polyubiquitin 6PU11 [Capsic 205 6e-53 gi|33327286|gb|AAQ08999.1| polyubiquitin 2 [Phaseolus vulgaris] 205 6e-53 gi|29836445|gb|AAM78180.1| putative polyubiquitin [Gossypium ... 205 6e-53 gi|21592581|gb|AAM64530.1| ubiquitin homolog [Arabidopsis thalia 205 6e-53 gi|16071|emb|CAA48140.1| ubiquitin [Antirrhinum majus] 205 6e-53 gi|15982787|gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thal 205 6e-53 gi|170354|gb|AAA34124.1| pentameric polyubiquitin 205 6e-53 gi|1684855|gb|AAB36545.1| ubiquitin-like protein [Phaseolus vulg 205 6e-53 gi|1800281|gb|AAB68045.1| polyubiquitin [Fragaria x ananassa] 205 6e-53 gi|6118549|gb|AAF04147.1| ubiquitin precursor [Hevea brasiliensi 205 6e-53 gi|87240493|gb|ABD32351.1| Ubiquitin [Medicago truncatula] 205 6e-53 gi|170352|gb|AAA34123.1| hexameric polyubiquitin >gi|870792|g... 205 6e-53 gi|20589|emb|CAA34886.1| unnamed protein product [Pisum sativ... 205 6e-53 gi|18412785|ref|NP_567286.1| UBQ11 (UBIQUITIN 11); protein bi... 205 6e-53 gi|18412077|ref|NP_567247.1| UBQ14; protein binding [Arabidop... 205 6e-53 gi|2995949|gb|AAC08400.1| ubiquitin [Mesembryanthemum crystallin 204 1e-52 gi|902586|gb|AAC49014.1| ubiquitin 204 1e-52 gi|61889379|emb|CAI51312.2| polyubiquitin [Capsicum chinense] 204 2e-52 gi|3603456|gb|AAC35858.1| polyubiquitin [Capsicum chinense] 204 2e-52 gi|17016983|gb|AAL33551.1|AF436850_1 polyubiquitin [Cucumis melo 202 3e-52 gi|6114876|dbj|BAA85750.1| polyubiquitin [Cucumis melo] 202 3e-52 gi|68160568|gb|AAY86773.1| polyubiquitin [Thlaspi caerulescens] 203 3e-52 gi|116312012|emb|CAJ86369.1| OSIGBa0117N13.13 [Oryza sativa (... 203 3e-52 gi|116060737|emb|CAL57215.1| Ubiquitin/60s ribosomal protein ... 203 3e-52 gi|115187323|gb|ABI84246.1| polyubiquitin 10 [Arachis hypogaea] 203 3e-52 gi|115460714|ref|NP_001053957.1| Os04g0628100 [Oryza sativa (... 203 3e-52 gi|110736490|dbj|BAF00213.1| polyubiquitin 4 UBQ4 [Arabidopsis t 203 3e-52 gi|93278214|gb|ABF06579.1| polyubiquitin [Gladiolus grandiflorus 203 3e-52 gi|61223100|gb|AAX40652.1| polyubiquitin [Oryza sativa (japonica 203 3e-52 gi|57282601|emb|CAD27944.1| polyubiquitin-like [Oryza sativa] 203 3e-52 gi|39939489|gb|AAR32784.1| polyubiquitin [Clusia minor] 203 3e-52 gi|35187449|gb|AAQ84316.1| fiber polyubiquitin [Gossypium barbad 203 3e-52 gi|30523391|gb|AAP31578.1| ubiquitin [Hevea brasiliensis] 203 3e-52 gi|28394784|gb|AAO42469.1| putative polyubiquitin [Arabidopsis l 203 3e-52 gi|755763|emb|CAA27751.1| unnamed protein product [Hordeum vulga 203 3e-52 gi|1332579|emb|CAA66667.1| polyubiquitin [Pinus sylvestris] 203 3e-52 gi|312160|emb|CAA51679.1| ubiquitin [Solanum lycopersicum] 203 3e-52 gi|14596193|gb|AAK68824.1| Unknown protein [Arabidopsis thaliana 203 3e-52 gi|18824|emb|CAA40324.1| hexaubiquitin protein [Helianthus an... 203 3e-52 gi|16660462|gb|AAL27564.1|AF429430_1 polyubiquitin OUB2 [Olea eu 203 3e-52 gi|4115337|gb|AAD03343.1| ubiquitin [Pisum sativum] 203 3e-52 gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis t 203 3e-52 gi|3126967|gb|AAC16012.1| polyubiquitin [Elaeagnus umbellata] 203 3e-52 gi|30680052|ref|NP_849299.1| UBQ10 (POLYUBIQUITIN 10); protei... 203 3e-52 gi|18803|emb|CAA40323.1| polyubiquitin protein [Helianthus annuu 203 3e-52 gi|602076|emb|CAA54603.1| pentameric polyubiquitin [Nicotiana ta 203 3e-52 gi|23397122|gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabi 203 3e-52 gi|16660459|gb|AAL27563.1|AF429429_1 polyubiquitin OUB1 [Olea eu 203 3e-52 gi|4809266|gb|AAD30173.1|AF148448_1 polyubiquitin [Sporobolus... 203 3e-52 gi|899608|gb|AAC49025.1| polyubiquitin 203 3e-52 gi|6934302|gb|AAF31707.1|AF221858_1 polyubiquitin [Euphorbia esu 203 3e-52 gi|1684857|gb|AAB36546.1| polyubiquitin [Phaseolus vulgaris] 203 3e-52 gi|168304|gb|AAA33401.1| ubiquitin 203 3e-52 gi|902584|gb|AAC49013.1| polyubiquitin containing 7 ubiquitin mo 203 3e-52 gi|2760345|gb|AAB95250.1| ubiquitin [Arabidopsis thaliana] 203 3e-52 gi|2760347|gb|AAB95251.1| ubiquitin [Arabidopsis thaliana] 203 3e-52 gi|71534894|gb|AAZ32851.1| pentameric polyubiquitin [Medicago sa 203 3e-52 gi|42572839|ref|NP_974516.1| UBQ10 (POLYUBIQUITIN 10); protei... 203 3e-52 gi|33323472|gb|AAQ07453.1| ubiquitin [Musa acuminata] 203 3e-52 gi|18412930|ref|NP_567291.1| UBQ10 (POLYUBIQUITIN 10); protei... 203 3e-52 gi|53850089|emb|CAH59739.1| polyubiquitin [Plantago major] 203 3e-52 gi|53850091|emb|CAH59740.1| polyubiquitin [Plantago major] 203 3e-52 gi|39546234|emb|CAE04243.3| OSJNBa0089N06.4 [Oryza sativa (japon 203 3e-52 gi|82512|pir||PS0380 ubiquitin precursor - rice (fragment) >g... 203 3e-52 gi|18420267|ref|NP_568397.1| UBQ4; protein binding [Arabidops... 203 3e-52 gi|226763|prf||1604470A poly-ubiquitin 203 3e-52 gi|115444401|ref|NP_001045980.1| Os02g0161900 [Oryza sativa (... 203 3e-52 gi|248337|gb|AAB21993.1| polyubiquitin [Zea mays] >gi|248339|... 203 3e-52 gi|30679945|ref|NP_851029.1| UBQ3 (POLYUBIQUITIN 3); protein ... 203 3e-52 gi|418854|pir||S30151 polyubiquitin 6 - parsley >gi|288112|em... 203 3e-52 gi|28804499|dbj|BAC57955.1| polyubiquitin [Aster tripolium] 203 3e-52 gi|320608|pir||S28426 polyubiquitin 4 - wild oat >gi|15989|em... 203 3e-52 gi|30983942|gb|AAP40646.1| putative polyubiquitin [Gossypium bar 202 5e-52 gi|89114278|gb|ABD61727.1| polyubiquitin [Lupinus albus] 202 5e-52 gi|73747822|gb|AAZ82816.1| ubiquitin monomer protein [Morus mong 202 5e-52 gi|37542506|gb|AAL25813.1| polyubiquitin [Prunus avium] 202 7e-52 gi|28436479|gb|AAO43306.1| putative polyubiquitin [Arabidopsis t 202 7e-52 gi|2894308|emb|CAA11269.1| polyubiquitin [Nicotiana tabacum] 202 7e-52 gi|395295|emb|CAA52290.1| polyubiquitin [Volvox carteri f. nagar 201 9e-52 gi|70780322|gb|AAZ08412.1| polyubiquitin [Populus alba] 201 1e-51 gi|3789940|gb|AAC67551.1| tetra-ubiquitin [Saccharum hybrid cult 201 1e-51 gi|3789942|gb|AAC67552.1| polyubiquitin [Saccharum hybrid cultiv 201 1e-51 gi|102655942|gb|AAY33920.2| polyubiquitin [Euphorbia characias] 201 2e-51 gi|28436476|gb|AAO43305.1| putative polyubiquitin [Arabidopsis t 200 2e-51 gi|28436474|gb|AAO43304.1| putative polyubiquitin [Arabidopsis t 200 2e-51 gi|28436485|gb|AAO43309.1| putative polyubiquitin [Arabidopsis t 200 3e-51 gi|28436483|gb|AAO43308.1| putative polyubiquitin [Arabidopsis t 200 3e-51 gi|433970|emb|CAA82268.1| polyubiquitin [Acetabularia peniculus] 200 3e-51 gi|28436487|gb|AAO43310.1| putative polyubiquitin [Arabidopsis t 199 3e-51 gi|2894304|emb|CAA11267.1| polyubiquitin [Nicotiana tabacum] 199 3e-51 gi|28436472|gb|AAO43303.1| putative polyubiquitin [Arabidopsis t 198 8e-51 gi|3158372|gb|AAC39466.1| polyubiquitin [Arabidopsis thaliana] 197 1e-50 gi|18405196|ref|NP_564675.1| UBQ12 (UBIQUITIN 12) [Arabidopsis t 197 2e-50 gi|19715913|emb|CAC84144.1| polyubiquitin-like protein [Nicotian 196 3e-50 gi|52077254|dbj|BAD46297.1| pentameric polyubiquitin-like [Or... 196 4e-50 gi|15218646|ref|NP_176714.1| UBQ13 [Arabidopsis thaliana] 196 5e-50 gi|7439572|pir||T02358 ubiquitin homolog T8F5.13 - Arabidopsi... 196 5e-50
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 839 Number of extensions: 27 Number of successful extensions: 9 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 8 Number of HSP's successfully gapped: 8 Length of query: 515 Length of database: 101054579 Length adjustment: 105 Effective length of query: 410 Effective length of database: 71302934 Effective search space: 4705993644 Effective search space used: 4705993644 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)