RID=1168938084-6017-168966313122.BLASTQ1, Contig204

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938084-6017-168966313122.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig204
Length=357

Distribution of 11 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15237742|ref|NP_200682.1|  unknown protein [Arabidopsis tha...   117    9e-27 
gi|8843794|dbj|BAA97342.1|  unnamed protein product [Arabidopsis    117    9e-27
gi|115439067|ref|NP_001043813.1|  Os01g0668000 [Oryza sativa (...   112    4e-25 
gi|116057367|emb|CAL51794.1|  Nuclear distribution protein NUDC (  55.1    7e-08
gi|15234308|ref|NP_194518.1|  unknown protein [Arabidopsis tha...  32.7    0.40  
gi|9295736|gb|AAF87042.1|AC006535_20  T24P13.14 [Arabidopsis thal  29.6    3.3  
gi|6634765|gb|AAF19745.1|AC009917_4  Contains a Transcription ...  29.6    3.3  
gi|15223346|ref|NP_173998.1|  unknown protein [Arabidopsis thalia  29.6    3.3   
gi|30524691|emb|CAC85247.1|  salt tolerance protein 5 [Beta vulga  29.3    4.4  
gi|77553108|gb|ABA95904.1|  transposon protein, putative, uncl...  28.5    7.5  
gi|15225411|ref|NP_182035.1|  RNA polymerase II transcription ...  28.1    9.7

Alignments

 

>gi|15237742|ref|NP_200682.1|  unknown protein [Arabidopsis thaliana]
 gi|18389274|gb|AAL67080.1|  unknown protein [Arabidopsis thaliana]
 gi|21436159|gb|AAM51326.1|  unknown protein [Arabidopsis thaliana]
Length=158

 Score =  117 bits (294),  Expect = 9e-27
 Identities = 54/57 (94%), Positives = 57/57 (100%), Gaps = 0/57 (0%)
 Frame = -2

Query  356  SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD  186
            SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQF+G+CPDPR+FMGGIRSD
Sbjct  102  SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRSD  158


>gi|8843794|dbj|BAA97342.1|  unnamed protein product [Arabidopsis thaliana]
Length=72

 Score =  117 bits (294),  Expect = 9e-27
 Identities = 54/57 (94%), Positives = 57/57 (100%), Gaps = 0/57 (0%)
 Frame = -2

Query  356  SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD  186
            SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQF+G+CPDPR+FMGGIRSD
Sbjct  16   SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRSD  72


>gi|115439067|ref|NP_001043813.1|  Os01g0668000 [Oryza sativa (japonica cultivar-group)]
 gi|18461297|dbj|BAB84492.1|  nuclear movement protein-like [Oryza sativa (japonica cultivar-group)]
 gi|20161589|dbj|BAB90510.1|  nuclear movement protein-like [Oryza sativa (japonica cultivar-group)]
 gi|113533344|dbj|BAF05727.1|  Os01g0668000 [Oryza sativa (japonica cultivar-group)]
Length=158

 Score =  112 bits (280),  Expect = 4e-25
 Identities = 52/57 (91%), Positives = 53/57 (92%), Gaps = 0/57 (0%)
 Frame = -2

Query  356  SPILGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD  186
            SPI GQG LDPYA D EQKRLMLQRFQEENPGFDFSQAQFTG+CPDPRTFMGGIRSD
Sbjct  102  SPIQGQGSLDPYAADQEQKRLMLQRFQEENPGFDFSQAQFTGTCPDPRTFMGGIRSD  158


>gi|116057367|emb|CAL51794.1|  Nuclear distribution protein NUDC (ISS) [Ostreococcus tauri]
Length=158

 Score = 55.1 bits (131),  Expect = 7e-08
 Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 0/40 (0%)
 Frame = -2

Query  314  DLEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGI  195
            + + +RLML+RFQ ENPGFDFS A F    PD  TFMGG+
Sbjct  117  EADSRRLMLERFQRENPGFDFSDATFDKPPPDASTFMGGV  156


>gi|15234308|ref|NP_194518.1|  unknown protein [Arabidopsis thaliana]
 gi|4972120|emb|CAB43977.1|  putative protein [Arabidopsis thaliana]
 gi|7269642|emb|CAB81438.1|  putative protein [Arabidopsis thaliana]
 gi|23296480|gb|AAN13067.1|  unknown protein [Arabidopsis thaliana]
Length=293

 Score = 32.7 bits (73),  Expect = 0.40
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 0/35 (0%)
 Frame = -2

Query  341  QGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQF  237
            Q Q+    +D  +K+ ML++F  +NPG DFS A+F
Sbjct  258  QKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKF  292


>gi|9295736|gb|AAF87042.1|AC006535_20  T24P13.14 [Arabidopsis thaliana]
Length=969

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
 Frame = -2

Query  332  LDPYATD-LEQKRLMLQR-----FQEENPGFDFSQ---AQFTGSCPDPRTFMGGI  195
            LDP A+D LE   + +++     FQ +   FD S    ++F G CP+   F+G I
Sbjct  560  LDPQASDNLETVTVYIEKCKKLEFQAKTGAFDLSDWILSEFRGKCPELAEFIGSI  614


>gi|6634765|gb|AAF19745.1|AC009917_4  Contains a Transcription factor TFIIB repeat PF|00382. [Arabidopsis 
thaliana]
Length=294

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 0/41 (0%)
 Frame = -2

Query  347  LGQGQLDPYATDLEQKRLMLQRFQEENPGFDFSQAQFTGSC  225
            L  G+LD Y  + ++  L+   F  ENPG+D  +A    +C
Sbjct  153  LDDGELDCYFRNPKEVHLVEIIFDHENPGYDEKEAAALNAC  193


>gi|15223346|ref|NP_173998.1|  unknown protein [Arabidopsis thaliana]
Length=967

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
 Frame = -2

Query  332  LDPYATD-LEQKRLMLQR-----FQEENPGFDFSQ---AQFTGSCPDPRTFMGGI  195
            LDP A+D LE   + +++     FQ +   FD S    ++F G CP+   F+G I
Sbjct  558  LDPQASDNLETVTVYIEKCKKLEFQAKTGAFDLSDWILSEFRGKCPELAEFIGSI  612


>gi|30524691|emb|CAC85247.1|  salt tolerance protein 5 [Beta vulgaris]
Length=295

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
 Frame = -2

Query  317  TDLEQKRLMLQRFQEENPGFDFSQAQF  237
            +D  QK+ ML++F  E+P  DFS A+F
Sbjct  268  SDDMQKQDMLKKFMSEHPEMDFSNAKF  294


>gi|77553108|gb|ABA95904.1|  transposon protein, putative, unclassified [Oryza sativa (japonica 
cultivar-group)]
Length=537

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 0/18 (0%)
 Frame = +3

Query  198  TTHKSPWIRTTPCKLSLR  251
            +TH+ PW+R  PC+  LR
Sbjct  174  STHRHPWLRALPCRPPLR  191


>gi|15225411|ref|NP_182035.1|  RNA polymerase II transcription factor/ transcription factor/ 
zinc ion binding [Arabidopsis thaliana]
 gi|4895242|gb|AAD32827.1|AC007659_9  putative transcription factor IIIB 70 KD subunit (TFIIIB) [Arabidopsis 
thaliana]
Length=565

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
 Frame = -2

Query  335  QLDPYATDLEQKRLMLQRFQEENPGFDFSQA  243
            QLD Y    E+ RL+   F  ENPG+D  +A
Sbjct  385  QLDCYFRTPEEVRLVKIFFDHENPGYDEKEA  415

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 222
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 357
Length of database: 101054579
Length adjustment: 86
Effective length of query: 271
Effective length of database: 76686565
Effective search space: 2530656645
Effective search space used: 2530656645
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)