Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938551-11662-88433844446.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig220 Length=253
Score E Sequences producing significant alignments: (Bits) Value gi|32351008|gb|AAP76508.1| cyclophilin [Triticum aestivum] >g... 62.4 5e-10 gi|21554007|gb|AAM63088.1| cyclophilin [Arabidopsis thaliana] 61.2 1e-09 gi|2443755|gb|AAB71401.1| cyclophilin [Arabidopsis thaliana] 61.2 1e-09 gi|15227674|ref|NP_180557.1| CYP5; peptidyl-prolyl cis-trans ... 61.2 1e-09 gi|115469872|ref|NP_001058535.1| Os06g0708500 [Oryza sativa (... 60.1 2e-09 gi|53792606|dbj|BAD53621.1| putative cyclophilin [Oryza sativ... 60.1 2e-09 gi|113202130|gb|ABI33223.1| cyclophilin [Camellia sinensis] 59.3 4e-09 gi|15237739|ref|NP_200679.1| ROC7; peptidyl-prolyl cis-trans ... 58.9 5e-09 gi|115469870|ref|NP_001058534.1| Os06g0708400 [Oryza sativa (... 53.9 2e-07 gi|83700346|gb|ABC41019.1| ER-localized cyclophilin [Aegilops ta 53.5 2e-07 gi|82547216|gb|ABB82363.1| cyclophilin [Triticum aestivum] >g... 53.5 2e-07 gi|82547214|gb|ABB82362.1| cyclophilin [Triticum aestivum] 53.5 2e-07 gi|56694218|gb|AAW22880.1| putative cyclophilin [Lycopersicon es 53.1 3e-07 gi|92893217|gb|ABE91669.1| Peptidyl-prolyl cis-trans isomeras... 47.0 2e-05 gi|82621146|gb|ABB86261.1| cyclophilin ROC7-like [Solanum tubero 44.3 1e-04 gi|7573487|emb|CAB87846.1| cyclophilin-like protein [Arabidopsis 42.4 5e-04 gi|18410386|ref|NP_567029.1| peptidyl-prolyl cis-trans isomer... 42.4 5e-04 gi|51971164|dbj|BAD44274.1| cyclophilin (AtCYP21-2) [Arabidopsis 42.4 5e-04 gi|115480397|ref|NP_001063792.1| Os09g0537600 [Oryza sativa (... 39.7 0.003 gi|15236227|ref|NP_195222.1| peptidyl-prolyl cis-trans isomer... 37.0 0.021 gi|116058302|emb|CAL53491.1| HSP90 co-chaperone CPR7/Cyclophilin 36.2 0.035 gi|14334173|gb|AAK60569.1|AF384147_1 cyclophilin [Triticum aesti 35.8 0.046 gi|13925731|gb|AAK49426.1|AF262982_1 cyclophilin A-1 [Triticu... 35.4 0.060 gi|42493201|gb|AAS17068.1| cyclophilin A [Triticum aestivum] ... 35.4 0.060 gi|13925734|gb|AAK49427.1|AF262983_1 cyclophilin A-2 [Triticu... 35.4 0.060 gi|83700350|gb|ABC41021.1| ER-localized cyclophilin [Triticum ur 34.3 0.13 gi|116059591|emb|CAL55298.1| HSP90 co-chaperone CPR7/Cyclophilin 33.9 0.17 gi|15226467|ref|NP_179709.1| peptidyl-prolyl cis-trans isomer... 33.9 0.17 gi|2443757|gb|AAB71402.1| cyclophilin [Arabidopsis thaliana] 33.5 0.23 gi|37788312|gb|AAP44537.1| cyclophilin-like protein [Triticum ae 33.1 0.30 gi|1563719|emb|CAA69622.1| cyclophylin [Digitalis lanata] 33.1 0.30 gi|461902|sp|P34887|CYPH_ALLCE Peptidyl-prolyl cis-trans isom... 32.3 0.51 gi|37722431|gb|AAN72439.1| cyclophilin [Kandelia candel] 32.0 0.66 gi|32401097|gb|AAP80745.1| cyclophilin [Kandelia candel] 32.0 0.66 gi|1561575|emb|CAA69598.1| cyclophilin [Digitalis lanata] 32.0 0.66 gi|115461585|ref|NP_001054392.1| Os05g0103200 [Oryza sativa (... 32.0 0.66 gi|15234781|ref|NP_195585.1| ROC1; peptidyl-prolyl cis-trans ... 32.0 0.66 gi|118103|sp|P21568|CYPH_LYCES Peptidyl-prolyl cis-trans isom... 32.0 0.66 gi|38708272|gb|AAR27291.1| cyclophilin [Thellungiella halophila] 31.2 1.1 gi|37788308|gb|AAP44535.1| cyclophilin-like protein [Triticum ae 31.2 1.1 gi|600769|gb|AAA57046.1| cyclophilin 2 31.2 1.1 gi|115443875|ref|NP_001045717.1| Os02g0121300 [Oryza sativa (... 31.2 1.1 gi|119367479|gb|ABL67655.1| putative cyclophilin [Citrus cv. Shi 30.8 1.5 gi|116058882|emb|CAL54589.1| Cyclophilin-type peptidyl-prolyl... 30.8 1.5 gi|118104|sp|P21569|CYPH_MAIZE Peptidyl-prolyl cis-trans isom... 30.8 1.5 gi|117372731|gb|ABK34279.1| cyclophilin [Solanum sogarandinum] 30.4 1.9 gi|62529356|gb|AAX84975.1| cyclophilin [Solanum tuberosum] 30.4 1.9 gi|1928939|gb|AAB51386.1| stress responsive cyclophilin [Solanum 30.4 1.9 gi|4559302|gb|AAD22975.1|AF126551_1 cyclophilin [Solanum tube... 30.4 1.9 gi|52788398|gb|AAU87301.1| cyclophilin [Pinus halepensis] 30.0 2.5 gi|108773415|ref|YP_635934.1| ribosomal protein S3 [Helicospo... 29.6 3.3 gi|90704803|dbj|BAE92296.1| putative peptidyl-prolyl cis-tran... 28.9 5.6 gi|21886603|emb|CAC84116.1| peptidylprolyl isomerase (cyclophili 28.9 5.6 gi|11994725|dbj|BAB03041.1| unnamed protein product [Arabidopsis 28.9 5.6 gi|6014889|sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans iso... 28.9 5.6 gi|2959712|gb|AAC05639.1| cyclophilin 1 [Chlamydomonas reinhardt 28.5 7.3 gi|62728587|gb|AAX94775.1| cyclophilin [Cucumis sativus] 28.5 7.3 gi|15227259|ref|NP_179251.1| ROC3; peptidyl-prolyl cis-trans ... 28.5 7.3 gi|92885334|gb|ABE87769.1| Zinc finger, CCHC-type [Medicago trun 28.1 9.5 gi|38566732|emb|CAE76635.1| cyclophilin-type peptidyl-prolyl ... 28.1 9.5 gi|18076088|emb|CAC80550.1| cyclophilin [Ricinus communis] 28.1 9.5
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 169 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 253 Length of database: 101054579 Length adjustment: 55 Effective length of query: 198 Effective length of database: 85470384 Effective search space: 2478641136 Effective search space used: 2478641136 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)