RID=1168939099-9169-129929869195.BLASTQ1, Contig226

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939099-9169-129929869195.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
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Score E Sequences producing significant alignments: (Bits) Value gi|15239811|ref|NP_199137.1| unknown protein [Arabidopsis tha... 33.1 0.30

gi|92881887|gb|ABE86446.1| reverse transcriptase - beet retro... 29.3 4.3 gi|92868542|gb|ABE78547.1| RNA-directed DNA polymerase (Rever... 28.9 5.6

Alignments

 

>gi|15239811|ref|NP_199137.1|  unknown protein [Arabidopsis thaliana]
 gi|10177385|dbj|BAB10586.1|  unnamed protein product [Arabidopsis thaliana]
Length=628

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 14/19 (73%), Positives = 15/19 (78%), Gaps = 0/19 (0%)
 Frame = -1

Query  182  GKGGRNVVRYQLLREIWKD  126
            G G R  VRYQLLREIWK+
Sbjct  606  GYGRRKTVRYQLLREIWKE  624


>gi|92881887|gb|ABE86446.1|  reverse transcriptase - beet retrotransposon (fragment)-related 
[Medicago truncatula]
 gi|92884012|gb|ABE87155.1|  reverse transcriptase - beet retrotransposon (fragment)-related 
[Medicago truncatula]
Length=322

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 0/32 (0%)
 Frame = +1

Query  25   SAQLQQNSPTLTRQPIITCIYTKTCSA*KGGC  120
            S  L  N PTL R+ I+ C+ T T S    GC
Sbjct  252  SVMLNMNFPTLWRKWIMECVGTATASVLANGC  283


>gi|92868542|gb|ABE78547.1|  RNA-directed DNA polymerase (Reverse transcriptase) [Medicago 
truncatula]
 gi|92868647|gb|ABE78648.1|  RNA-directed DNA polymerase (Reverse transcriptase) [Medicago 
truncatula]
Length=807

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = +1

Query  34   LQQNSPTLTRQPIITCIYTKTCSA*KGGC  120
            L  N PTL R+ I+ C+ T T SA   GC
Sbjct  255  LNMNFPTLWRKWIMECVGTATASALVNGC  283

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 149 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 185 Length of database: 101054579 Length adjustment: 34 Effective length of query: 151 Effective length of database: 91420713 Effective search space: 2468359251 Effective search space used: 2468359251 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 3 Blast Hits on the Query Sequence