Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939342-27995-72435536854.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig236 Length=697
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|18483235|gb|AAL73979.1|AF466201_8 methionine synthase protein 348 1e-99 gi|974782|emb|CAA89019.1| cobalamine-independent methionine s... 343 2e-98 gi|8134569|sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltrig... 343 2e-98 gi|115361539|gb|ABI95860.1| methionine synthase [Nicotiana suave 343 5e-98 gi|8134570|sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltrig... 342 6e-98 gi|8134568|sp|P93263|METE_MESCR 5-methyltetrahydropteroyltrig... 345 1e-97 gi|14532772|gb|AAK64167.1| putative methionine synthase [Arabido 343 1e-97 gi|15228634|ref|NP_187028.1| 5-methyltetrahydropteroyltriglut... 343 1e-97 gi|8439545|gb|AAF74983.1|AF082893_1 methionine synthase [Solanum 342 1e-97 gi|115489652|ref|NP_001067313.1| Os12g0623900 [Oryza sativa (... 341 1e-97 gi|108862990|gb|ABG22093.1| 5-methyltetrahydropteroyltrigluta... 341 1e-97 gi|71000469|dbj|BAE07181.1| methionine synthase [Beta vulgaris] 343 3e-97 gi|68655500|emb|CAJ01714.1| methionine synthase 2 enzyme [Hordeu 339 5e-97 gi|108862992|gb|ABG22095.1| 5-methyltetrahydropteroyltrigluta... 338 9e-97 gi|115489654|ref|NP_001067314.1| Os12g0624000 [Oryza sativa (... 338 9e-97 gi|68655495|emb|CAJ01713.1| methionine synthase 1 enzyme [Hordeu 336 6e-96 gi|50897038|dbj|BAD34660.1| methionine synthase [Hordeum vulgare 336 6e-96 gi|23397103|gb|AAN31836.1| putative 5-methyltetrahydropteroyl... 337 7e-96 gi|15982743|gb|AAL09712.1| AT5g17920/MPI7_60 [Arabidopsis thalia 337 7e-96 gi|47600741|emb|CAE55863.1| cobalamin-independent methionine ... 337 7e-96 gi|15238686|ref|NP_197294.1| ATCIMS (COBALAMIN-INDEPENDENT ME... 337 7e-96 gi|17017263|gb|AAL33589.1| methionine synthase [Zea mays] 336 2e-95 gi|33325957|gb|AAQ08403.1| methionine synthase [Glycine max] 327 7e-93 gi|30688090|ref|NP_197598.2| 5-methyltetrahydropteroyltriglut... 327 1e-91 gi|110738301|dbj|BAF01079.1| 5-methyltetrahydropteroyltriglut... 327 1e-91 gi|6716760|gb|AAF26735.1| methionine synthase [Coffea arabica] 321 1e-91 gi|47600745|emb|CAE55865.1| cobalamin-independent methionine ... 325 4e-91 gi|55670112|pdb|1U1H|A Chain A, A. Thaliana Cobalamine Indepe... 323 5e-91 gi|92873141|gb|ABE81639.1| 5-methyltetrahydropteroyltriglutam... 320 2e-90 gi|50727380|gb|AAT81296.1| methionine synthase [Medicago sativa] 285 2e-80 gi|82569023|emb|CAJ43618.1| methionine synthase [Plantago major] 207 9e-58 gi|3334258|sp|Q39586|METE_CHLRE 5-methyltetrahydropteroyltrig... 172 1e-42 gi|4098359|gb|AAD00267.1| cobalamin independent methionine sy... 154 4e-37 gi|108862994|gb|ABG22097.1| 5-methyltetrahydropteroyltrigluta... 129 1e-29 gi|2695943|emb|CAA10990.1| cobalamine-independent methionine ... 65.1 2e-10 gi|5669652|gb|AAD46411.1|AF096261_1 ethylene-responsive methi... 42.4 3e-07 gi|53689767|gb|AAU89777.1| gag-pol polyprotein-like [Solanum tub 34.3 0.46 gi|15231932|ref|NP_187467.1| KOB1 (KOBITO) [Arabidopsis thali... 31.6 3.0 gi|115461837|ref|NP_001054518.1| Os05g0125200 [Oryza sativa (... 31.2 3.9
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 477 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 697 Length of database: 101054579 Length adjustment: 109 Effective length of query: 588 Effective length of database: 70169538 Effective search space: 8630853174 Effective search space used: 8630853174 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 66 (30.0 bits)