>gi|115436644|ref|NP_001043080.1|  Os01g0375500 [Oryza sativa (japonica cultivar-group)]
 gi|113532611|dbj|BAF04994.1|  Os01g0375500 [Oryza sativa (japonica cultivar-group)]
Length=321

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 0/23 (0%)
 Frame = +1

Query  358  SPCFAGFICSELYPVTSLQCCNE  426
            SP F+GF CS  + V ++QCC+E
Sbjct  102  SPDFSGFSCSLPFKVDAVQCCHE  124


>gi|115436640|ref|NP_001043078.1|  Os01g0375200 [Oryza sativa (japonica cultivar-group)]
 gi|113532609|dbj|BAF04992.1|  Os01g0375200 [Oryza sativa (japonica cultivar-group)]
Length=572

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 0/23 (0%)
 Frame = +1

Query  358  SPCFAGFICSELYPVTSLQCCNE  426
            SP F+GF CS  + V ++QCC+E
Sbjct  343  SPDFSGFSCSLPFKVDAVQCCHE  365


>gi|54290768|dbj|BAD61389.1|  putative dehydroquinate dehydratase [Oryza sativa (japonica cultivar-group)]
Length=657

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 0/23 (0%)
 Frame = +1

Query  358  SPCFAGFICSELYPVTSLQCCNE  426
            SP F+GF CS  + V ++QCC+E
Sbjct  364  SPDFSGFSCSLPFKVDAVQCCHE  386


>gi|54290767|dbj|BAD61388.1|  putative dehydroquinate dehydratase [Oryza sativa (japonica cultivar-group)]
Length=509

 Score = 30.8 bits (68),  Expect = 1.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 0/23 (0%)
 Frame = +1

Query  358  SPCFAGFICSELYPVTSLQCCNE  426
            SP F+GF CS  + V ++QCC+E
Sbjct  280  SPDFSGFSCSLPFKVDAVQCCHE  302


>gi|16494|emb|CAA36735.1|  DNA-directed RNA polymerase [Arabidopsis thaliana]
Length=1860

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 0/30 (0%)
 Frame = -2

Query  297   WPKPMKARR*TWNCQKQPQLQ*LLITSIHP  208
             WP P+  +R  WN QK  ++    I+ +HP
Sbjct  995   WPLPVNIKRHIWNAQKTFKIDLRKISDMHP  1024


>gi|16505|emb|CAA37130.1|  RNA polymerase II [Arabidopsis thaliana]
Length=1841

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 0/30 (0%)
 Frame = -2

Query  297  WPKPMKARR*TWNCQKQPQLQ*LLITSIHP  208
            WP P+  +R  WN QK  ++    I+ +HP
Sbjct  969  WPLPVNIKRHIWNAQKTFKIDLRKISDMHP  998


>gi|15233338|ref|NP_195305.1|  NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed 
RNA polymerase [Arabidopsis thaliana]
 gi|12644149|sp|P18616|RPB1_ARATH  DNA-directed RNA polymerase II largest subunit
 gi|4883421|emb|CAA21466.2|  DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Arabidopsis 
thaliana]
 gi|7270532|emb|CAB81489.1|  DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Arabidopsis 
thaliana]
Length=1840

 Score = 28.9 bits (63),  Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 0/30 (0%)
 Frame = -2

Query  297   WPKPMKARR*TWNCQKQPQLQ*LLITSIHP  208
             WP P+  +R  WN QK  ++    I+ +HP
Sbjct  975   WPLPVNIKRHIWNAQKTFKIDLRKISDMHP  1004


>gi|89329716|gb|ABD67495.1|  RAMOSUS4 [Pisum sativum]
Length=708

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 0/41 (0%)
 Frame = +2

Query  101  PSSTQFGVYPLLVLPSLSRF*TQCSTRDGWVFCFPQGWIEV  223
            P+ ++FG+  L   P LS+    C    G+V+  P G +++
Sbjct  557  PAVSEFGLSILTCYPQLSKMQLDCGDTRGYVYTAPSGQMDL  597


>gi|77552110|gb|ABA94907.1|  retrotransposon protein, putative, Ty3-gypsy subclass [Oryza 
sativa (japonica cultivar-group)]
Length=811

 Score = 28.5 bits (62),  Expect = 9.5
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = -1

Query  259  LPKATTTTMTLNNFNPPLRKTEDPTITCRTLSSKT*KTR*NQQWINSK-LGTGRANIK--  89
            +PK  T++   ++ +P   K  DP +T + +      T  NQ    S+  GT  +  +  
Sbjct  383  MPKIRTSSRKPSDIDPS-GKDPDPAMTEQNIPKDPEPTAENQPTAESQPTGTHASGDRAD  441

Query  88   -KELSPSRNEQGYAKTPCASTQQT*NHKDA  2
              +LSP+RN+    +T       T N  DA
Sbjct  442  PSDLSPTRNQSATTETATTQEPPTGNQSDA  471