Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939452-17124-63000217724.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig242 Length=650
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanu 294 2e-79 gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein 294 2e-79 gi|15235029|ref|NP_192772.1| LHCB5 (LIGHT HARVESTING COMPLEX ... 293 3e-79 gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like 292 6e-79 gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, ... 289 5e-78 gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa (... 289 5e-78 gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium ... 281 1e-75 gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium ... 281 1e-75 gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 281 2e-75 gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 281 2e-75 gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxip 280 2e-75 gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa] 280 3e-75 gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens 280 4e-75 gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii] 280 4e-75 gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll ... 280 4e-75 gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 280 4e-75 gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii] 278 1e-74 gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillard 278 1e-74 gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium san 277 3e-74 gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifoli 275 1e-73 gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris] >gi... 275 1e-73 gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP... 186 8e-47 gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii] 161 1e-42 gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetra 151 3e-38 gi|115820|sp|P15194|CB2B_PINSY Chlorophyll a-b binding protei... 145 5e-37 gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-bindin 148 5e-37 gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus 147 6e-37 gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pin 147 6e-37 gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b bin... 147 6e-37 gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll... 146 1e-36 gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-b... 146 1e-36 gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-b... 146 1e-36 gi|115798|sp|P04781|CB23_PETSP Chlorophyll a-b binding protei... 146 1e-36 gi|14423661|sp|P92919|CB23_APIGR Chlorophyll a-b binding prot... 146 1e-36 gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cice 146 1e-36 gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll... 145 1e-36 gi|115817|sp|P15193|CB2A_PINSY Chlorophyll a-b binding protei... 145 2e-36 gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b b... 147 2e-36 gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-... 146 3e-36 gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein pr... 146 3e-36 gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein 145 3e-36 gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagu 145 3e-36 gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding prot 145 3e-36 gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein; LHCPII 145 4e-36 gi|115814|sp|P27490|CB28_PEA Chlorophyll a-b binding protein ... 146 4e-36 gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (... 145 4e-36 gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesem 145 4e-36 gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (... 145 4e-36 gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trif 145 4e-36 gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medic 145 4e-36 gi|115804|sp|P04782|CB24_PETSP Chlorophyll a-b binding protei... 145 4e-36 gi|227139|prf||1615137B chlorophyll a/b binding protein P27 145 4e-36 gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-b... 144 5e-36 gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [A... 145 5e-36 gi|15220615|ref|NP_174286.1| CAB1 (CHLOROPHYLL A/B BINDING PR... 145 5e-36 gi|18397286|ref|NP_564339.1| CAB3 (CHLOROPHYLL A/B BINDING PR... 145 5e-36 gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a... 144 5e-36 gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-b 144 5e-36 gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa (... 144 5e-36 gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa (... 144 5e-36 gi|115768|sp|P08221|CB21_CUCSA Chlorophyll a-b binding protei... 144 5e-36 gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding ... 145 5e-36 gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHC... 145 5e-36 gi|115818|sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protei... 144 7e-36 gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-... 145 7e-36 gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b bindin... 144 7e-36 gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesem 144 7e-36 gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protei 144 7e-36 gi|224927|prf||1204205B protein 1B,chlorophyll binding 144 7e-36 gi|115819|sp|P07370|CB2B_LYCES Chlorophyll a-b binding protei... 144 7e-36 gi|115771|sp|P12329|CB21_MAIZE Chlorophyll a-b binding protei... 144 7e-36 gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlor... 144 7e-36 gi|115829|sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein... 143 7e-36 gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata] 144 7e-36 gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago 144 7e-36 gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B bindin... 144 7e-36 gi|115788|sp|P07371|CB22_PEA Chlorophyll a-b binding protein ... 145 9e-36 gi|115832|sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein... 145 9e-36 gi|115805|sp|P27495|CB24_TOBAC Chlorophyll a-b binding protei... 144 9e-36 gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-b... 144 9e-36 gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-b... 144 9e-36 gi|21592428|gb|AAM64379.1| putative photosystem II type I chl... 145 9e-36 gi|18403549|ref|NP_565787.1| LHB1B1; chlorophyll binding [Ara... 145 9e-36 gi|18403546|ref|NP_565786.1| LHB1B2; chlorophyll binding [Ara... 145 9e-36 gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (... 144 9e-36 gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (... 144 9e-36 gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-b... 144 9e-36 gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-b... 144 9e-36 gi|115807|sp|P12470|CB25_NICPL Chlorophyll a-b binding protei... 144 9e-36 gi|115781|sp|P27492|CB21_TOBAC Chlorophyll a-b binding protei... 144 9e-36 gi|115792|sp|P27493|CB22_TOBAC Chlorophyll a-b binding protei... 144 9e-36 gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-b... 144 9e-36 gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-b... 144 9e-36 gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlor... 144 9e-36 gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex... 145 9e-36 gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Li... 145 9e-36 gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesem 145 1e-35 gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-li 143 1e-35 gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein 143 1e-35 gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting c... 143 1e-35
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 431 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 650 Length of database: 101054579 Length adjustment: 109 Effective length of query: 541 Effective length of database: 70169538 Effective search space: 7508140566 Effective search space used: 7508140566 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 65 (29.6 bits)