Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940282-11589-52299109419.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig252 Length=612
Score E Sequences producing significant alignments: (Bits) Value gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein 167 9e-52 gi|15235029|ref|NP_192772.1| LHCB5 (LIGHT HARVESTING COMPLEX ... 167 9e-52 gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like 167 2e-51 gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanu 162 7e-51 gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa (... 163 2e-50 gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, ... 163 2e-50 gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium ... 156 3e-49 gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium ... 156 3e-49 gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 159 6e-49 gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 159 6e-49 gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxip 155 7e-49 gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa] 155 8e-49 gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens 156 1e-48 gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii] 154 1e-48 gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 158 1e-48 gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillard 156 3e-48 gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii] 153 3e-48 gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium san 155 7e-48 gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll ... 154 3e-47 gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifoli 153 3e-47 gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris] >gi... 157 4e-46 gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP... 163 3e-41 gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii] 115 1e-25 gi|59710172|gb|AAW88575.1| light harvesting protein [Eleusine co 113 6e-25 gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetra 108 1e-23 gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-b... 107 4e-23 gi|14423661|sp|P92919|CB23_APIGR Chlorophyll a-b binding prot... 107 4e-23 gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus 106 6e-23 gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pin 106 6e-23 gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex 106 8e-23 gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [A... 106 8e-23 gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding pro 106 8e-23 gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-bindin 106 8e-23 gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b bin... 106 8e-23 gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding ... 106 8e-23 gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amara 106 8e-23 gi|115817|sp|P15193|CB2A_PINSY Chlorophyll a-b binding protei... 106 8e-23 gi|15220615|ref|NP_174286.1| CAB1 (CHLOROPHYLL A/B BINDING PR... 106 8e-23 gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHC... 106 8e-23 gi|18397286|ref|NP_564339.1| CAB3 (CHLOROPHYLL A/B BINDING PR... 106 8e-23 gi|115778|sp|P13851|CB21_SINAL Chlorophyll a-b binding protei... 106 8e-23 gi|77799163|gb|ABB03724.1| putative chloroplast chlorophyll A... 105 1e-22 gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding 105 1e-22 gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b b... 105 1e-22 gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesem 105 1e-22 gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesem 105 1e-22 gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll ... 105 1e-22 gi|115820|sp|P15194|CB2B_PINSY Chlorophyll a-b binding protei... 105 1e-22 gi|21592428|gb|AAM64379.1| putative photosystem II type I chl... 105 1e-22 gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thal 105 1e-22 gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-... 105 1e-22 gi|30686051|ref|NP_850231.1| LHB1B2 [Arabidopsis thaliana] 105 1e-22 gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein 105 1e-22 gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein 105 1e-22 gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-b... 105 1e-22 gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-b... 105 1e-22 gi|224927|prf||1204205B protein 1B,chlorophyll binding 105 1e-22 gi|18403549|ref|NP_565787.1| LHB1B1; chlorophyll binding [Ara... 105 1e-22 gi|115816|sp|P14274|CB2A_LYCES Chlorophyll a-b binding protei... 105 1e-22 gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-b... 105 1e-22 gi|18403546|ref|NP_565786.1| LHB1B2; chlorophyll binding [Ara... 105 1e-22 gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-b... 105 1e-22 gi|115807|sp|P12470|CB25_NICPL Chlorophyll a-b binding protei... 105 1e-22 gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta 105 1e-22 gi|115822|sp|P10707|CB2D_LYCES Chlorophyll a-b binding protei... 105 1e-22 gi|115805|sp|P27495|CB24_TOBAC Chlorophyll a-b binding protei... 105 1e-22 gi|115795|sp|P12469|CB23_NICPL Chlorophyll a-b binding protei... 105 1e-22 gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precu... 105 1e-22 gi|115821|sp|P14275|CB2C_LYCES Chlorophyll a-b binding protei... 105 1e-22 gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cice 105 1e-22 gi|227139|prf||1615137B chlorophyll a/b binding protein P27 105 1e-22 gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-b... 105 1e-22 gi|115781|sp|P27492|CB21_TOBAC Chlorophyll a-b binding protei... 105 1e-22 gi|115819|sp|P07370|CB2B_LYCES Chlorophyll a-b binding protei... 105 1e-22 gi|224928|prf||1204205C protein 1C,chlorophyll binding 105 1e-22 gi|115792|sp|P27493|CB22_TOBAC Chlorophyll a-b binding protei... 105 1e-22 gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-b... 105 1e-22 gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-b... 105 1e-22 gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-b... 105 1e-22 gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll... 105 2e-22 gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll... 105 2e-22 gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (... 105 2e-22 gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (... 105 2e-22 gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein; LHCPII 105 2e-22 gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCA... 105 2e-22 gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesem 105 2e-22 gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida] 105 2e-22 gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-... 105 2e-22 gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein pr... 105 2e-22 gi|115814|sp|P27490|CB28_PEA Chlorophyll a-b binding protein ... 105 2e-22 gi|115798|sp|P04781|CB23_PETSP Chlorophyll a-b binding protei... 105 2e-22 gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata] 104 2e-22 gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B bindin... 104 2e-22 gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa (... 104 2e-22 gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding prot 104 2e-22 gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-li 104 2e-22 gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein 104 2e-22 gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa (... 104 2e-22 gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-lik... 104 2e-22 gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago 104 2e-22
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 387 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 612 Length of database: 101054579 Length adjustment: 108 Effective length of query: 504 Effective length of database: 70452887 Effective search space: 6763477152 Effective search space used: 6763477152 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 65 (29.6 bits)
