Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940294-12492-48760412209.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig253 Length=334
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (... 159 2e-39 gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (... 159 2e-39 gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa (... 159 2e-39 gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein 159 2e-39 gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa (... 159 2e-39 gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-lik... 159 2e-39 gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-b... 159 2e-39 gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a... 159 4e-39 gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medic 159 4e-39 gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-b 159 4e-39 gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b 159 4e-39 gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein 159 4e-39 gi|115784|sp|P08222|CB22_CUCSA Chlorophyll a-b binding protei... 159 4e-39 gi|115768|sp|P08221|CB21_CUCSA Chlorophyll a-b binding protei... 159 4e-39 gi|169193|gb|AAA33700.1| Major Cab protein [Petunia x hybrida] 158 5e-39 gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein 158 5e-39 gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa (... 158 5e-39 gi|115808|sp|P04783|CB25_PETSP Chlorophyll a-b binding protei... 158 5e-39 gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (... 158 5e-39 gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-b... 158 5e-39 gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-b... 158 5e-39 gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein 158 6e-39 gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protei 158 6e-39 gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-li 158 6e-39 gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein 158 6e-39 gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-b... 158 6e-39 gi|115804|sp|P04782|CB24_PETSP Chlorophyll a-b binding protei... 158 6e-39 gi|115825|sp|P07369|CB2G_LYCES Chlorophyll a-b binding protei... 158 6e-39 gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-b... 158 6e-39 gi|115805|sp|P27495|CB24_TOBAC Chlorophyll a-b binding protei... 158 6e-39 gi|115795|sp|P12469|CB23_NICPL Chlorophyll a-b binding protei... 158 6e-39 gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-b... 158 6e-39 gi|115792|sp|P27493|CB22_TOBAC Chlorophyll a-b binding protei... 158 6e-39 gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-b... 158 6e-39 gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS I... 158 6e-39 gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-b... 158 6e-39 gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-b... 158 6e-39 gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex... 157 8e-39 gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Li... 157 8e-39 gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cice 157 8e-39 gi|115788|sp|P07371|CB22_PEA Chlorophyll a-b binding protein ... 157 8e-39 gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trif 157 1e-38 gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b 157 1e-38 gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b 157 1e-38 gi|115820|sp|P15194|CB2B_PINSY Chlorophyll a-b binding protei... 157 1e-38 gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b bi... 157 1e-38 gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein 157 1e-38 gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida] 157 1e-38 gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida] 157 1e-38 gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-b... 157 1e-38 gi|115822|sp|P10707|CB2D_LYCES Chlorophyll a-b binding protei... 157 1e-38 gi|115781|sp|P27492|CB21_TOBAC Chlorophyll a-b binding protei... 157 1e-38 gi|115798|sp|P04781|CB23_PETSP Chlorophyll a-b binding protei... 157 1e-38 gi|115812|sp|P27491|CB27_TOBAC Chlorophyll a-b binding protei... 157 1e-38 gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesem 156 2e-38 gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-... 156 2e-38 gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding pr... 156 2e-38 gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein 156 2e-38 gi|226263|prf||1503276A chlorophyll a/b binding protein 156 2e-38 gi|224927|prf||1204205B protein 1B,chlorophyll binding 156 2e-38 gi|115816|sp|P14274|CB2A_LYCES Chlorophyll a-b binding protei... 156 2e-38 gi|115817|sp|P15193|CB2A_PINSY Chlorophyll a-b binding protei... 156 2e-38 gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precu... 156 2e-38 gi|115821|sp|P14275|CB2C_LYCES Chlorophyll a-b binding protei... 156 2e-38 gi|115814|sp|P27490|CB28_PEA Chlorophyll a-b binding protein ... 156 2e-38 gi|115819|sp|P07370|CB2B_LYCES Chlorophyll a-b binding protei... 156 2e-38 gi|224928|prf||1204205C protein 1C,chlorophyll binding 156 2e-38 gi|115774|sp|P04779|CB21_PETSP Chlorophyll a-b binding protei... 156 2e-38 gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein; LHCPII 156 2e-38 gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaran 156 2e-38 gi|115800|sp|P09756|CB23_SOYBN Chlorophyll a-b binding protei... 156 2e-38 gi|115771|sp|P12329|CB21_MAIZE Chlorophyll a-b binding protei... 156 2e-38 gi|115807|sp|P12470|CB25_NICPL Chlorophyll a-b binding protei... 156 2e-38 gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll... 156 2e-38 gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-bindin... 155 3e-38 gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b bindi 155 3e-38 gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCA... 155 3e-38 gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-... 155 3e-38 gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach ... 155 3e-38 gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus 155 3e-38 gi|115823|sp|P14276|CB2E_LYCES Chlorophyll a-b binding protei... 155 3e-38 gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precu... 155 3e-38 gi|115779|sp|P12471|CB21_SOYBN Chlorophyll a-b binding protei... 155 3e-38 gi|227139|prf||1615137B chlorophyll a/b binding protein P27 155 3e-38 gi|115780|sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protei... 155 3e-38 gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pin 155 3e-38 gi|115824|sp|P14277|CB2F_LYCES Chlorophyll a-b binding protei... 155 3e-38 gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precu... 155 3e-38 gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagu 155 3e-38 gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-bindin 155 4e-38 gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b bin... 155 4e-38 gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C 155 4e-38 gi|115815|sp|P27497|CB29_MAIZE Chlorophyll a-b binding protei... 155 4e-38 gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-bi... 155 4e-38 gi|115778|sp|P13851|CB21_SINAL Chlorophyll a-b binding protei... 155 4e-38 gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b b... 155 5e-38 gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding pro 155 5e-38 gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesem 155 5e-38 gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesem 155 5e-38 gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding prot 155 5e-38
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 186 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 334 Length of database: 101054579 Length adjustment: 79 Effective length of query: 255 Effective length of database: 78670008 Effective search space: 2517440256 Effective search space used: 2517440256 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)
