RID=1168940423-22522-139895104603.BLASTQ1, Contig260

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940423-22522-139895104603.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig260
Length=474

Distribution of 14 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|1351222|sp|P48513|TF2B_SOYBN  Transcription initiation fact...  36.6    0.042 
gi|15227397|ref|NP_181694.1|  TFIIB (TRANSCRIPTION FACTOR II B...  33.9    0.27  
gi|1841399|emb|CAA84309.1|  AtTFIIB2 [Arabidopsis thaliana]        32.0    1.0   
gi|15228267|ref|NP_187644.1|  RNA polymerase II transcription ...  32.0    1.0   
gi|115480363|ref|NP_001063775.1|  Os09g0534800 [Oryza sativa (...  30.8    2.3   
gi|8778377|gb|AAF79385.1|AC007887_44  F15O4.11 [Arabidopsis thali  30.0    3.9  
gi|92897556|gb|ABE93722.1|  Glycoside transferase, six-hairpin [M  29.3    6.7  
gi|51555866|dbj|BAD38678.1|  disease resistance protein SLH1 [Ara  29.3    6.7  
gi|87241060|gb|ABD32918.1|  Glycoside transferase, six-hairpin...  29.3    6.7  
gi|76803833|sp|Q9FH83|WRK52_ARATH  Probable WRKY transcription...  29.3    6.7  
gi|15242355|ref|NP_199339.1|  transcription factor [Arabidopsi...  29.3    6.7   
gi|26449414|dbj|BAC41834.1|  putative disease resistance protein   29.3    6.7   
gi|6598361|gb|AAF18599.1|AC002354_8  putative disease resistance   28.9    8.7  
gi|42569093|ref|NP_179297.2|  ATP binding / transmembrane recepto  28.9    8.7

Alignments

 

>gi|1351222|sp|P48513|TF2B_SOYBN  Transcription initiation factor IIB (General transcription factor 
TFIIB)
 gi|945087|gb|AAB09756.1|  transcription factor TFIIB [Glycine max]
Length=313

 Score = 36.6 bits (83),  Expect = 0.042
 Identities = 14/15 (93%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = +1

Query  1    SWYAKEEDLKNLCSP  45
            +WYAKEEDLKNLCSP
Sbjct  299  NWYAKEEDLKNLCSP  313


>gi|15227397|ref|NP_181694.1|  TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription 
factor/ transcription factor/ zinc ion binding [Arabidopsis 
thaliana]
 gi|1351221|sp|P48512|TF2B1_ARATH  Transcription initiation factor IIB-1 (General transcription 
factor TFIIB-1) (AtTFIIB1)
 gi|945085|gb|AAB09755.1|  transcription factor TFIIB [Arabidopsis thaliana]
 gi|2618697|gb|AAB84344.1|  transcription factor IIB (TFIIB) [Arabidopsis thaliana]
 gi|20260322|gb|AAM13059.1|  transcription factor IIB [Arabidopsis thaliana]
 gi|21554842|gb|AAM63705.1|  transcription factor IIB (TFIIB) [Arabidopsis thaliana]
 gi|22136182|gb|AAM91169.1|  transcription factor IIB [Arabidopsis thaliana]
 gi|39545878|gb|AAR28002.1|  TFIIB1 [Arabidopsis thaliana]
Length=312

 Score = 33.9 bits (76),  Expect = 0.27
 Identities = 14/15 (93%), Positives = 14/15 (93%), Gaps = 0/15 (0%)
 Frame = +1

Query  1    SWYAKEEDLKNLCSP  45
            SWYAKEEDLKNL SP
Sbjct  298  SWYAKEEDLKNLSSP  312


>gi|1841399|emb|CAA84309.1|  AtTFIIB2 [Arabidopsis thaliana]
Length=301

 Score = 32.0 bits (71),  Expect = 1.0
 Identities = 13/15 (86%), Positives = 14/15 (93%), Gaps = 0/15 (0%)
 Frame = +1

Query  1    SWYAKEEDLKNLCSP  45
            +WYAKEEDLKNL SP
Sbjct  287  AWYAKEEDLKNLQSP  301


>gi|15228267|ref|NP_187644.1|  RNA polymerase II transcription factor/ transcription factor/ 
zinc ion binding [Arabidopsis thaliana]
 gi|21363045|sp|Q9SS44|TF2B2_ARATH  Transcription initiation factor IIB-2 (General transcription 
factor TFIIB-2) (AtTFIIB2)
 gi|6056193|gb|AAF02810.1|AC009400_6  transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
 gi|15215784|gb|AAK91437.1|  AT3g10330/F14P13_7 [Arabidopsis thaliana]
 gi|16974427|gb|AAL31139.1|  AT3g10330/F14P13_7 [Arabidopsis thaliana]
 gi|21593436|gb|AAM65403.1|  transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
 gi|39545880|gb|AAR28003.1|  TFIIB2 [Arabidopsis thaliana]
Length=312

 Score = 32.0 bits (71),  Expect = 1.0
 Identities = 13/15 (86%), Positives = 14/15 (93%), Gaps = 0/15 (0%)
 Frame = +1

Query  1    SWYAKEEDLKNLCSP  45
            +WYAKEEDLKNL SP
Sbjct  298  AWYAKEEDLKNLQSP  312


>gi|115480363|ref|NP_001063775.1|  Os09g0534800 [Oryza sativa (japonica cultivar-group)]
 gi|21362998|sp|Q8W0W3|TF2B_ORYSA  Transcription initiation factor IIB (General transcription factor 
TFIIB)
 gi|18481632|gb|AAL73491.1|AF464908_1  general transcription factor TFIIB [Oryza sativa]
 gi|50725809|dbj|BAD33339.1|  Transcription initiation factor IIB [Oryza sativa (japonica cultivar-group)]
 gi|50726577|dbj|BAD34211.1|  Transcription initiation factor IIB [Oryza sativa (japonica cultivar-group)]
 gi|113632008|dbj|BAF25689.1|  Os09g0534800 [Oryza sativa (japonica cultivar-group)]
Length=312

 Score = 30.8 bits (68),  Expect = 2.3
 Identities = 12/13 (92%), Positives = 13/13 (100%), Gaps = 0/13 (0%)
 Frame = +1

Query  7    YAKEEDLKNLCSP  45
            YAKEEDLKNLC+P
Sbjct  300  YAKEEDLKNLCTP  312


>gi|8778377|gb|AAF79385.1|AC007887_44  F15O4.11 [Arabidopsis thaliana]
Length=1465

 Score = 30.0 bits (66),  Expect = 3.9
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 0/28 (0%)
 Frame = +3

Query  33   SLQSLNNDRNPCTTFLVAAFVCLDRQSH  116
            SL  + NDRN C  FL     CLD   H
Sbjct  533  SLSVVPNDRNKCARFLTQCLNCLDAPDH  560


>gi|92897556|gb|ABE93722.1|  Glycoside transferase, six-hairpin [Medicago truncatula]
Length=352

 Score = 29.3 bits (64),  Expect = 6.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
 Frame = -3

Query  100  KQTKAATKKVVHGFLSLFKDCRDS*G  23
            K  KA +KK+VHG  +LFK  RD  G
Sbjct  288  KDNKAYSKKLVHGATTLFKFSRDQRG  313


>gi|51555866|dbj|BAD38678.1|  disease resistance protein SLH1 [Arabidopsis thaliana]
Length=1378

 Score = 29.3 bits (64),  Expect = 6.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query  48   NNDRNPCTTFLVAAFVCLDRQSHNSHSE*FISPLTCISKLFDPTFLSENNIPYFQQQEIY  227
            N + +P   F   +   L  +    H E +  PL  + + FDP  L E N+PY Q Q+++
Sbjct  535  NPEVHPVINFPTGSLHSLPNELRLLHWENY--PLKSLPQNFDPRHLVEINMPYSQLQKLW  592


>gi|87241060|gb|ABD32918.1|  Glycoside transferase, six-hairpin, subgroup [Medicago truncatula]
Length=622

 Score = 29.3 bits (64),  Expect = 6.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
 Frame = -3

Query  100  KQTKAATKKVVHGFLSLFKDCRDS*G  23
            K  KA +KK+VHG  +LFK  RD  G
Sbjct  288  KDNKAYSKKLVHGATTLFKFSRDQRG  313


>gi|76803833|sp|Q9FH83|WRK52_ARATH  Probable WRKY transcription factor 52 (WRKY DNA-binding protein 
52) (Disease resistance protein RRS1) (Resistance to Ralstonia 
solanacearum 1 protein) (Disease resistance protein SLH1) 
(SENSITIVE TO LOW HUMIDITY 1 protein)
 gi|110741008|dbj|BAE98598.1|  disease resistance like protein [Arabidopsis thaliana]
Length=1288

 Score = 29.3 bits (64),  Expect = 6.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query  48   NNDRNPCTTFLVAAFVCLDRQSHNSHSE*FISPLTCISKLFDPTFLSENNIPYFQQQEIY  227
            N + +P   F   +   L  +    H E +  PL  + + FDP  L E N+PY Q Q+++
Sbjct  535  NPEVHPVINFPTGSLHSLPNELRLLHWENY--PLKSLPQNFDPRHLVEINMPYSQLQKLW  592


>gi|15242355|ref|NP_199339.1|  transcription factor [Arabidopsis thaliana]
 gi|10176997|dbj|BAB10247.1|  disease resistance protein-like [Arabidopsis thaliana]
Length=1187

 Score = 29.3 bits (64),  Expect = 6.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query  48   NNDRNPCTTFLVAAFVCLDRQSHNSHSE*FISPLTCISKLFDPTFLSENNIPYFQQQEIY  227
            N + +P   F   +   L  +    H E +  PL  + + FDP  L E N+PY Q Q+++
Sbjct  535  NPEVHPVINFPTGSLHSLPNELRLLHWENY--PLKSLPQNFDPRHLVEINMPYSQLQKLW  592


>gi|26449414|dbj|BAC41834.1|  putative disease resistance protein [Arabidopsis thaliana]
Length=1187

 Score = 29.3 bits (64),  Expect = 6.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query  48   NNDRNPCTTFLVAAFVCLDRQSHNSHSE*FISPLTCISKLFDPTFLSENNIPYFQQQEIY  227
            N + +P   F   +   L  +    H E +  PL  + + FDP  L E N+PY Q Q+++
Sbjct  535  NPEVHPVINFPTGSLHSLPNELRLLHWENY--PLKSLPQNFDPRHLVEINMPYSQLQKLW  592


>gi|6598361|gb|AAF18599.1|AC002354_8  putative disease resistance protein [Arabidopsis thaliana]
Length=957

 Score = 28.9 bits (63),  Expect = 8.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 0/28 (0%)
 Frame = +3

Query  144  PLTCISKLFDPTFLSENNIPYFQQQEIY  227
            PL  + + FDPT L E N+PY + Q+++
Sbjct  425  PLQSLPQHFDPTHLVELNMPYSKLQKLW  452


>gi|42569093|ref|NP_179297.2|  ATP binding / transmembrane receptor [Arabidopsis thaliana]
Length=1355

 Score = 28.9 bits (63),  Expect = 8.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 0/28 (0%)
 Frame = +3

Query  144  PLTCISKLFDPTFLSENNIPYFQQQEIY  227
            PL  + + FDPT L E N+PY + Q+++
Sbjct  425  PLQSLPQHFDPTHLVELNMPYSKLQKLW  452

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 317
Number of extensions: 11
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 474
Length of database: 101054579
Length adjustment: 104
Effective length of query: 370
Effective length of database: 71586283
Effective search space: 3865659282
Effective search space used: 3865659282
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)